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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057398 ID=TCONS_00057398|Name=TCONS_00057398|organism=Clytia hemisphaerica|type=transcript|length=3336bpRun BLAST on NCBI protein sequence of TCONS_00057398-protein >TCONS_00057398-protein ID=TCONS_00057398-protein|Name=TCONS_00057398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp INVKCMIKLTLLVETILQRKVVNSSRVNHLEENCKSKMAALYGDMIFNIDRun BLAST on NCBI transcript from alignment at scaffold_288:694205..711335- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057398 ID=TCONS_00057398|Name=TCONS_00057398|organism=Clytia hemisphaerica|type=transcript|length=17131bp|location=Sequence derived from alignment at scaffold_288:694205..711335- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_288:694205..711335- >TCONS_00057398 ID=TCONS_00057398|Name=TCONS_00057398|organism=Clytia hemisphaerica|type=CDS|length=9384bp|location=Sequence derived from alignment at scaffold_288:694205..711335- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057398 vs. Swiss-Prot (Human)
Match: VA0D1 (V-type proton ATPase subunit d 1 OS=Homo sapiens GN=ATP6V0D1 PE=1 SV=1) HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0 Identity = 259/350 (74.00%), Postives = 316/350 (90.29%), Query Frame = 1
Query: 118 ALYGDMIFNIDNGYLEGLVRGFRSGILTRTDYLNLIQCETLEDLKLHLQSTDYGNFLANEAGPLTVAIIDEKLREKLVIEFEHLRNQAVEPLATFMDFITYSYMIDNIILLITGTLHQRSIAELIPKCHPLGKFPEMASINIASTPAELYNAVLVDTPLASFFHDCISEQDLDEMNIEIIRNSLYKSYLEAFSKFCEGLGGVNAEVMRSILSFEADRRAIMITLNSFGTELNKDDRAKLFPKCGQLFPDGLARLAKAEDYDQVRNIADCYGEYRSLFDGTGTNPGDKTLEDKFFEHEVKLNVNSFMQQFHFGVFYAYVKLKEQECRNIVWISECISQRNKTKVDNYINIF 1167
+ + ++ FN+DNGYLEGLVRG ++G+L++ DYLNL+QCETLEDLKLHLQSTDYGNFLANEA PLTV++ID++L+EK+V+EF H+RN A EPLA+F+DFITYSYMIDN+ILLITGTLHQRSIAEL+PKCHPLG F +M ++NIA TPAELYNA+LVDTPLA+FF DCISEQDLDEMNIEIIRN+LYK+YLE+F KFC LGG A+ M IL FEADRRA +IT+NSFGTEL+K+DRAKLFP CG+L+P+GLA+LA+A+DY+QV+N+AD Y EY+ LF+G G+NPGDKTLED+FFEHEVKLN +F+ QFHFGVFYA+VKLKEQECRNIVWI+ECI+QR++ K+DNYI IF
Sbjct: 2 SFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKIDNYIPIF 351 The following BLAST results are available for this feature:
BLAST of TCONS_00057398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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