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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=transcript|length=3191bp
tgatgcgcgcattttgtacagtctgtaaatttatttttgacttttgcttt
tataagatatctggtctgtaaatctatcaaaacttttccttcagctcttc
ggtcgaagctcaaaaatacaaatatgaacaaaaaagtgaaagaaaacaac
caaaaacactgCAATCTCTtcaaaagaattgaagctaagtacatgaaaaa
gataaacacaaaggccacacacagtatcgaaaagtgaaatgccaaagttA
AAGAacagttttttgtttgtttaaacATTTAACACTCCTTTTTgtagtaa
tgtcagaaatattcaatatagcCCCAAAATGtgctgtatatacataacta
aaataccttgaaataatctgcaacatatctgtagaactgacaaaacaatt
atctggagccaaagtgatcaacgaatccagtttgttaaaaaattatacac
tcatacaagtccaaattcGAGCATTTAAATGTAGTTttgtgaagcaaaaa
tttgttggtgcacacagaagatacatcaggtcacttaaattcaataaatc
taatttctaatcttttacaaaatctccacattaaacaagaaaggaggaag
aaaaagaagcaaacttccttccggctacttttttttcgaaatctaaatat
attttccaatctatgatttggtgtctcacagaaaatgtaaacattacgtt
atgttatatttgtagacactcgccaggtaaaaatgtctttagccgtatat
cggctaaaggcggcaaatctctggacaaaggaaatatcacttgttaagca
tcctctataaggagcacgaatctgtTAGTGGATGACAGCAGCctactgcc
aattatatctggatacattttgatttgaattttgtgTTGCAggctcaaaa
ttaaaaatttggttTAATGGCTAAATAACATTTACTGTAGAAGGAATGAC
ATTGATTGTGAAAGAATGTGTGTCTACACAATTGCAACACCATTTCTGTT
CTTCCATCGTCGAAAGCATCtcataaaattttcattcatgaaaatgtaaa
caatagAGTCACTTATACCATCTAAACAAAACCAAACGAAGTGATACCGA
AAGCCTGCAGTTTCCACGACAGCTCGAAACATATGTGGCATTGTtccgaa
gatgaaaaatgaagcacaTATGATGAAAGGTgtgaaaaatttagttttcc
gATTTCTATACAATGAGTCCCTCGTAATTTGTGTTGCATGGCGATATTTA
ATATAAATGTATATGTATATAGATACAAAGACGACATTTGTTAATAAAAC
ACCTGCGGTAGCGGTCCACTGGGACACGATCTTGACCGTTAAGGTTTCAG
TCAGATTAAGAGCTAAAGAAACTATGAAAAATAGAACAAAAGCAATCCAG
GATGCAGCAACCATGTGAGTTCGTTTGAGGAAAACCCAAGTTGATTCATA
GCGTAAATGCAACCAAATGGCAAAGAATCTTTGTAATGTCAATAATATCA
TTGAACTGTACATTGGGATGAAGAATGCAGCTGTTATTCCGTAAAAGTAT
TTTTCATAATTAGGATACTCGATTTCCATTACAATACGAATTGTTTGGTA
CACACTCAATGATAATAAAGAAATCGATAagctgaaaatttcaatgtttt
ctgCGAGGTTCAGATTTGTTTTGATCAAAACATAAATTCCAAAAGAATGC
AGAGAGATGACAAGAAATGCCAAACAAATGCACGTTATACAAAGCCAGTC
ACAGTGAGCCATTGATTGAGTATTCTTTGATAGCAATATTAGACTTGAAC
CTTATTTGCCGAAACCCTGCGTCAACTGATTCTTGCTTTAACTTAAATTA
TTGCAAAGACTCTCCAAATCGGAAGTTTCATCTCATTTTACGATGAAACT
TGCGCAACTTGGAAAGGGAAGTAAATGAATTAGGTCAAAAATTAGCCTCA
AATTAAGTAAAACTTCATTCTATTGGAGAGAACTCAAGAAAGCTATTAaa
tattctatgaaaaaaagaatgaataaaaCTATATAAATAATCTATAAATC
AAACCTGtccttttggtcaaaatttcccAGAAAAAGTACAACGTTTGAAG
CTGCAATTAACTTGGGTCTGTATATAATAGAAGAACCTCATCCGGATATA
ATAATCCTCCTACGCCTGAATCTTATTGGAAGTAAAGGTTTTGAACAATG
CGGACAATCAAGACACTGCTACTGTGCATGCGCAGACGTTGAACGATAAG
CAGCAACAAAAAGGCATTGTTTTAAAACTTgcaattttaattaaaaaaat
cttgaatatttCTGTACCATTTTCAAGGGTCAAAGGACAGAAGAAATTTC
AAGAACCTTCGTTCCGCTGGAAACGTAAGAACATAAAAACAAAGCGTATA
AGAACACACAGCTTTTCTTTCAATGCTTCGAATTTAAAACCATTATTCAA
AAACACGTAGGGATTTTTCGTACAAATTTCGATGACGTTAATCTCCCGTT
attaatatttatttcaacgttaaaaaaactaatttttagcCATGTTGACA
AAGAGATGCTTAGGTTAGAATAAAAAAAGGATAGACTTTACTAGATCaac
cattgattttaaagccaCAAAGGGGTTAGGGGGGATTCTTTAacttttct
caggcaagaaaagtgAGACCGTATGTAAGATGCGCTCGTAAAATGTTgct
ctttctttgttttcaagcggcatatttttcgaaataaatttattttcaat
ttggcGTTTGTTTGAAAACCACGCGTTTTGGATAGGAATTTCAGATCTAG
CTACTTCGGGGATTTGAAATCAATGAGATCAACTTAAATCTTCCACAAAA
GATGAAGCTTGACTTCTTTCATACTTGGTGCAAGAACACACATTTATTAA
AATACTTCTTCAGAGCCTTGATAGTACACACACAAGTACACTCCAAGTAT
ATTTAACGTCTCCTGGAATAAACATCCGTTGAAAGCGAGGTTATGGTAAA
TTAAACCACCAGCCTTTTCAAGGACCATCATAAAGTATCGTACGAAATAC
GGTGGCCATTCGTAAAGgaataaagaacttttttccTGTAATGGTCGTCA
CCTTGCAACCTGGACACTGTAGGACCCTCTCCCGAACCATAAAATGATCT
CGTACGAGATGTCCATTCGTATAAAAGTAAAGAAGAGCATA Run BLAST on NCBI protein sequence of TCONS_00057414-protein >TCONS_00057414-protein ID=TCONS_00057414-protein|Name=TCONS_00057414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MAHCDWLCITCICLAFLVISLHSFGIYVLIKTNLNLAENIEIFSLSISLL
SLSVYQTIRIVMEIEYPNYEKYFYGITAAFFIPMYSSMILLTLQRFFAIW
LHLRYESTWVFLKRTHMVAASWIAFVLFFIVSLALNLTETLTVKIVSQWT
ATAGVLLTNVVFVSIYIYIYIKYRHATQITRDSLYRNRKTKFFTPFIICA
SFFIFGTMPHMFRAVVETAGFRYHFVWFCLDGISDSIVYIFMNENFMRCF
RRWKNRNGVAIV Run BLAST on NCBI transcript from alignment at scaffold_288:60666..63856 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=transcript|length=3191bp|location=Sequence derived from alignment at scaffold_288:60666..63856 (Clytia hemisphaerica)
TATGCTCTTCTTTACTTTTATACGAATGGACATCTCGTACGAGATCATTT
TATGGTTCGGGAGAGGGTCCTACAGTGTCCAGGTTGCAAGGTGACGACCA
TTACAggaaaaaagttctttattcCTTTACGAATGGCCACCGTATTTCGT
ACGATACTTTATGATGGTCCTTGAAAAGGCTGGTGGTTTAATTTACCATA
ACCTCGCTTTCAACGGATGTTTATTCCAGGAGACGTTAAATATACTTGGA
GTGTACTTGTGTGTGTACTATCAAGGCTCTGAAGAAGTATTTTAATAAAT
GTGTGTTCTTGCACCAAGTATGAAAGAAGTCAAGCTTCATCTTTTGTGGA
AGATTTAAGTTGATCTCATTGATTTCAAATCCCCGAAGTAGCTAGATCTG
AAATTCCTATCCAAAACGCGTGGTTTTCAAACAAACgccaaattgaaaat
aaatttatttcgaaaaatatgccgcttgaaaacaaagaaagagcAACATT
TTACGAGCGCATCTTACATACGGTCTcacttttcttgcctgagaaaagtT
AAAGAATCCCCCCTAACCCCTTTGtggctttaaaatcaatggttGATCTA
GTAAAGTCTATCCTTTTTTTATTCTAACCTAAGCATCTCTTTGTCAACAT
GgctaaaaattagtttttttaacgttgaaataaatattaatAACGGGAGA
TTAACGTCATCGAAATTTGTACGAAAAATCCCTACGTGTTTTTGAATAAT
GGTTTTAAATTCGAAGCATTGAAAGAAAAGCTGTGTGTTCTTATACGCTT
TGTTTTTATGTTCTTACGTTTCCAGCGGAACGAAGGTTCTTGAAATTTCT
TCTGTCCTTTGACCCTTGAAAATGGTACAGaaatattcaagattttttta
attaaaattgcAAGTTTTAAAACAATGCCTTTTTGTTGCTGCTTATCGTT
CAACGTCTGCGCATGCACAGTAGCAGTGTCTTGATTGTCCGCATTGTTCA
AAACCTTTACTTCCAATAAGATTCAGGCGTAGGAGGATTATTATATCCGG
ATGAGGTTCTTCTATTATATACAGACCCAAGTTAATTGCAGCTTCAAACG
TTGTACTTTTTCTgggaaattttgaccaaaaggaCAGGTTTGATTTATAG
ATTATTTATATAGttttattcattctttttttcatagaatattTAATAGC
TTTCTTGAGTTCTCTCCAATAGAATGAAGTTTTACTTAATTTGAGGCTAA
TTTTTGACCTAATTCATTTACTTCCCTTTCCAAGTTGCGCAAGTTTCATC
GTAAAATGAGATGAAACTTCCGATTTGGAGAGTCTTTGCAATAATTTAAG
TTAAAGCAAGAATCAGTTGACGCAGGGTTTCGGCAAATAAGGTTCAAGTC
TAATATTGCTATCAAAGAATACTCAATCAATGGCTCACTGTGACTGGCTT
TGTATAACGTGCATTTGTTTGGCATTTCTTGTCATCTCTCTGCATTCTTT
TGGAATTTATGTTTTGATCAAAACAAATCTGAACCTCGcagaaaacattg
aaattttcagctTATCGATTTCTTTATTATCATTGAGTGTGTACCAAACA
ATTCGTATTGTAATGGAAATCGAGTATCCTAATTATGAAAAATACTTTTA
CGGAATAACAGCTGCATTCTTCATCCCAATGTACAGTTCAATGATATTAT
TGACATTACAAAGATTCTTTGCCATTTGGTTGCATTTACGCTATGAATCA
ACTTGGGTTTTCCTCAAACGAACTCACATGGTTGCTGCATCCTGGATTGC
TTTTGTTCTATTTTTCATAGTTTCTTTAGCTCTTAATCTGACTGAAACCT
TAACGGTCAAGATCGTGTCCCAGTGGACCGCTACCGCAGGTGTTTTATTA
ACAAATGTCGTCTTTGTATCTATATACATATACATTTATATTAAATATCG
CCATGCAACACAAATTACGAGGGACTCATTGTATAGAAATcggaaaacta
aatttttcacACCTTTCATCATAtgtgcttcatttttcatcttcggaACA
ATGCCACATATGTTTCGAGCTGTCGTGGAAACTGCAGGCTTTCGGTATCA
CTTCGTTTGGTTTTGTTTAGATGGTATAAGTGACTctattgtttacattt
tcatgaatgaaaattttatgaGATGCTTTCGACGATGGAAGAACAGAAAT
GGTGTTGCAATTGTGTAGACACACATTCTTTCACAATCAATGTCATTCCT
TCTACAGTAAATGTTATTTAGCCATTAaaccaaatttttaattttgagcc
TGCAAcacaaaattcaaatcaaaatgtatccagatataattggcagtagG
CTGCTGTCATCCACTAacagattcgtgctccttatagaggatgcttaaca
agtgatatttcctttgtccagagatttgccgcctttagccgatatacggc
taaagacatttttacctggcgagtgtctacaaatataacataacgtaatg
tttacattttctgtgagacaccaaatcatagattggaaaatatatttaga
tttcgaaaaaaaagtagccggaaggaagtttgcttctttttcttcctcct
ttcttgtttaatgtggagattttgtaaaagattagaaattagatttattg
aatttaagtgacctgatgtatcttctgtgtgcaccaacaaatttttgctt
cacaaAACTACATTTAAATGCTCgaatttggacttgtatgagtgtataat
tttttaacaaactggattcgttgatcactttggctccagataattgtttt
gtcagttctacagatatgttgcagattatttcaaggtattttagttatgt
atatacagcaCATTTTGGGgctatattgaatatttctgacattactacAA
AAAGGAGTGTTAAATgtttaaacaaacaaaaaactgtTCTTTaactttgg
catttcacttttcgatactgtgtgtggcctttgtgtttatctttttcatg
tacttagcttcaattcttttgaAGAGATTGcagtgtttttggttgttttc
tttcacttttttgttcatatttgtatttttgagcttcgaccgaagagctg
aaggaaaagttttgatagatttacagaccagatatcttataaaagcaaaa
gtcaaaaataaatttacagactgtacaaaatgcgcgcatca Coding sequence (CDS) from alignment at scaffold_288:60666..63856 >TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_288:60666..63856 (Clytia hemisphaerica)
ATGGCTCACTGTGACTGGCTTTGTATAACGTGCATTTGTTTGGCATTTCT
TGTCATCTCTCTGCATTCTTTTGGAATTTATGTTTTGATCAAAACAAATC
TGAACCTCGcagaaaacattgaaattttcagctTATCGATTTCTTTATTA
TCATTGAGTGTGTACCAAACAATTCGTATTGTAATGGAAATCGAGTATCC
TAATTATGAAAAATACTTTTACGGAATAACAGCTGCATTCTTCATCCCAA
TGTACAGTTCAATGATATTATTGACATTACAAAGATTCTTTGCCATTTGG
TTGCATTTACGCTATGAATCAACTTGGGTTTTCCTCAAACGAACTCACAT
GGTTGCTGCATCCTGGATTGCTTTTGTTCTATTTTTCATAGTTTCTTTAG
CTCTTAATCTGACTGAAACCTTAACGGTCAAGATCGTGTCCCAGTGGACC
GCTACCGCAGGTGTTTTATTAACAAATGTCGTCTTTGTATCTATATACAT
ATACATTTATATTAAATATCGCCATGCAACACAAATTACGAGGGACTCAT
TGTATAGAAATcggaaaactaaatttttcacACCTTTCATCATAtgtgct
tcatttttcatcttcggaACAATGCCACATATGTTTCGAGCTGTCGTGGA
AACTGCAGGCTTTCGGTATCACTTCGTTTGGTTTTGTTTAGATGGTATAA
GTGACTctattgtttacattttcatgaatgaaaattttatgaGATGCTTT
CGACGATGGAAGAACAGAAATGGTGTTGCAATTGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057414-exon-scaffold_288-1491911889:60666..63856 | TCONS_00057414-exon-scaffold_288-1491911889:60666..63856 | Clytia hemisphaerica | exon |
| TCONS_00057414-exon-scaffold_288-1510915933:60666..63856 | TCONS_00057414-exon-scaffold_288-1510915933:60666..63856 | Clytia hemisphaerica | exon |
| TCONS_00057414-exon-scaffold_288-1575043694:60666..63856 | TCONS_00057414-exon-scaffold_288-1575043694:60666..63856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:60666..63856 . |
Blast
The following BLAST results are available for this feature:
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