Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=transcript|length=3191bp tgatgcgcgcattttgtacagtctgtaaatttatttttgacttttgcttt tataagatatctggtctgtaaatctatcaaaacttttccttcagctcttc ggtcgaagctcaaaaatacaaatatgaacaaaaaagtgaaagaaaacaac caaaaacactgCAATCTCTtcaaaagaattgaagctaagtacatgaaaaa gataaacacaaaggccacacacagtatcgaaaagtgaaatgccaaagttA AAGAacagttttttgtttgtttaaacATTTAACACTCCTTTTTgtagtaa tgtcagaaatattcaatatagcCCCAAAATGtgctgtatatacataacta aaataccttgaaataatctgcaacatatctgtagaactgacaaaacaatt atctggagccaaagtgatcaacgaatccagtttgttaaaaaattatacac tcatacaagtccaaattcGAGCATTTAAATGTAGTTttgtgaagcaaaaa tttgttggtgcacacagaagatacatcaggtcacttaaattcaataaatc taatttctaatcttttacaaaatctccacattaaacaagaaaggaggaag aaaaagaagcaaacttccttccggctacttttttttcgaaatctaaatat attttccaatctatgatttggtgtctcacagaaaatgtaaacattacgtt atgttatatttgtagacactcgccaggtaaaaatgtctttagccgtatat cggctaaaggcggcaaatctctggacaaaggaaatatcacttgttaagca tcctctataaggagcacgaatctgtTAGTGGATGACAGCAGCctactgcc aattatatctggatacattttgatttgaattttgtgTTGCAggctcaaaa ttaaaaatttggttTAATGGCTAAATAACATTTACTGTAGAAGGAATGAC ATTGATTGTGAAAGAATGTGTGTCTACACAATTGCAACACCATTTCTGTT CTTCCATCGTCGAAAGCATCtcataaaattttcattcatgaaaatgtaaa caatagAGTCACTTATACCATCTAAACAAAACCAAACGAAGTGATACCGA AAGCCTGCAGTTTCCACGACAGCTCGAAACATATGTGGCATTGTtccgaa gatgaaaaatgaagcacaTATGATGAAAGGTgtgaaaaatttagttttcc gATTTCTATACAATGAGTCCCTCGTAATTTGTGTTGCATGGCGATATTTA ATATAAATGTATATGTATATAGATACAAAGACGACATTTGTTAATAAAAC ACCTGCGGTAGCGGTCCACTGGGACACGATCTTGACCGTTAAGGTTTCAG TCAGATTAAGAGCTAAAGAAACTATGAAAAATAGAACAAAAGCAATCCAG GATGCAGCAACCATGTGAGTTCGTTTGAGGAAAACCCAAGTTGATTCATA GCGTAAATGCAACCAAATGGCAAAGAATCTTTGTAATGTCAATAATATCA TTGAACTGTACATTGGGATGAAGAATGCAGCTGTTATTCCGTAAAAGTAT TTTTCATAATTAGGATACTCGATTTCCATTACAATACGAATTGTTTGGTA CACACTCAATGATAATAAAGAAATCGATAagctgaaaatttcaatgtttt ctgCGAGGTTCAGATTTGTTTTGATCAAAACATAAATTCCAAAAGAATGC AGAGAGATGACAAGAAATGCCAAACAAATGCACGTTATACAAAGCCAGTC ACAGTGAGCCATTGATTGAGTATTCTTTGATAGCAATATTAGACTTGAAC CTTATTTGCCGAAACCCTGCGTCAACTGATTCTTGCTTTAACTTAAATTA TTGCAAAGACTCTCCAAATCGGAAGTTTCATCTCATTTTACGATGAAACT TGCGCAACTTGGAAAGGGAAGTAAATGAATTAGGTCAAAAATTAGCCTCA AATTAAGTAAAACTTCATTCTATTGGAGAGAACTCAAGAAAGCTATTAaa tattctatgaaaaaaagaatgaataaaaCTATATAAATAATCTATAAATC AAACCTGtccttttggtcaaaatttcccAGAAAAAGTACAACGTTTGAAG CTGCAATTAACTTGGGTCTGTATATAATAGAAGAACCTCATCCGGATATA ATAATCCTCCTACGCCTGAATCTTATTGGAAGTAAAGGTTTTGAACAATG CGGACAATCAAGACACTGCTACTGTGCATGCGCAGACGTTGAACGATAAG CAGCAACAAAAAGGCATTGTTTTAAAACTTgcaattttaattaaaaaaat cttgaatatttCTGTACCATTTTCAAGGGTCAAAGGACAGAAGAAATTTC AAGAACCTTCGTTCCGCTGGAAACGTAAGAACATAAAAACAAAGCGTATA AGAACACACAGCTTTTCTTTCAATGCTTCGAATTTAAAACCATTATTCAA AAACACGTAGGGATTTTTCGTACAAATTTCGATGACGTTAATCTCCCGTT attaatatttatttcaacgttaaaaaaactaatttttagcCATGTTGACA AAGAGATGCTTAGGTTAGAATAAAAAAAGGATAGACTTTACTAGATCaac cattgattttaaagccaCAAAGGGGTTAGGGGGGATTCTTTAacttttct caggcaagaaaagtgAGACCGTATGTAAGATGCGCTCGTAAAATGTTgct ctttctttgttttcaagcggcatatttttcgaaataaatttattttcaat ttggcGTTTGTTTGAAAACCACGCGTTTTGGATAGGAATTTCAGATCTAG CTACTTCGGGGATTTGAAATCAATGAGATCAACTTAAATCTTCCACAAAA GATGAAGCTTGACTTCTTTCATACTTGGTGCAAGAACACACATTTATTAA AATACTTCTTCAGAGCCTTGATAGTACACACACAAGTACACTCCAAGTAT ATTTAACGTCTCCTGGAATAAACATCCGTTGAAAGCGAGGTTATGGTAAA TTAAACCACCAGCCTTTTCAAGGACCATCATAAAGTATCGTACGAAATAC GGTGGCCATTCGTAAAGgaataaagaacttttttccTGTAATGGTCGTCA CCTTGCAACCTGGACACTGTAGGACCCTCTCCCGAACCATAAAATGATCT CGTACGAGATGTCCATTCGTATAAAAGTAAAGAAGAGCATA Run BLAST on NCBI protein sequence of TCONS_00057414-protein >TCONS_00057414-protein ID=TCONS_00057414-protein|Name=TCONS_00057414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MAHCDWLCITCICLAFLVISLHSFGIYVLIKTNLNLAENIEIFSLSISLL SLSVYQTIRIVMEIEYPNYEKYFYGITAAFFIPMYSSMILLTLQRFFAIW LHLRYESTWVFLKRTHMVAASWIAFVLFFIVSLALNLTETLTVKIVSQWT ATAGVLLTNVVFVSIYIYIYIKYRHATQITRDSLYRNRKTKFFTPFIICA SFFIFGTMPHMFRAVVETAGFRYHFVWFCLDGISDSIVYIFMNENFMRCF RRWKNRNGVAIV Run BLAST on NCBI transcript from alignment at scaffold_288:60666..63856 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=transcript|length=3191bp|location=Sequence derived from alignment at scaffold_288:60666..63856 (Clytia hemisphaerica) TATGCTCTTCTTTACTTTTATACGAATGGACATCTCGTACGAGATCATTT
TATGGTTCGGGAGAGGGTCCTACAGTGTCCAGGTTGCAAGGTGACGACCA
TTACAggaaaaaagttctttattcCTTTACGAATGGCCACCGTATTTCGT
ACGATACTTTATGATGGTCCTTGAAAAGGCTGGTGGTTTAATTTACCATA
ACCTCGCTTTCAACGGATGTTTATTCCAGGAGACGTTAAATATACTTGGA
GTGTACTTGTGTGTGTACTATCAAGGCTCTGAAGAAGTATTTTAATAAAT
GTGTGTTCTTGCACCAAGTATGAAAGAAGTCAAGCTTCATCTTTTGTGGA
AGATTTAAGTTGATCTCATTGATTTCAAATCCCCGAAGTAGCTAGATCTG
AAATTCCTATCCAAAACGCGTGGTTTTCAAACAAACgccaaattgaaaat
aaatttatttcgaaaaatatgccgcttgaaaacaaagaaagagcAACATT
TTACGAGCGCATCTTACATACGGTCTcacttttcttgcctgagaaaagtT
AAAGAATCCCCCCTAACCCCTTTGtggctttaaaatcaatggttGATCTA
GTAAAGTCTATCCTTTTTTTATTCTAACCTAAGCATCTCTTTGTCAACAT
GgctaaaaattagtttttttaacgttgaaataaatattaatAACGGGAGA
TTAACGTCATCGAAATTTGTACGAAAAATCCCTACGTGTTTTTGAATAAT
GGTTTTAAATTCGAAGCATTGAAAGAAAAGCTGTGTGTTCTTATACGCTT
TGTTTTTATGTTCTTACGTTTCCAGCGGAACGAAGGTTCTTGAAATTTCT
TCTGTCCTTTGACCCTTGAAAATGGTACAGaaatattcaagattttttta
attaaaattgcAAGTTTTAAAACAATGCCTTTTTGTTGCTGCTTATCGTT
CAACGTCTGCGCATGCACAGTAGCAGTGTCTTGATTGTCCGCATTGTTCA
AAACCTTTACTTCCAATAAGATTCAGGCGTAGGAGGATTATTATATCCGG
ATGAGGTTCTTCTATTATATACAGACCCAAGTTAATTGCAGCTTCAAACG
TTGTACTTTTTCTgggaaattttgaccaaaaggaCAGGTTTGATTTATAG
ATTATTTATATAGttttattcattctttttttcatagaatattTAATAGC
TTTCTTGAGTTCTCTCCAATAGAATGAAGTTTTACTTAATTTGAGGCTAA
TTTTTGACCTAATTCATTTACTTCCCTTTCCAAGTTGCGCAAGTTTCATC
GTAAAATGAGATGAAACTTCCGATTTGGAGAGTCTTTGCAATAATTTAAG
TTAAAGCAAGAATCAGTTGACGCAGGGTTTCGGCAAATAAGGTTCAAGTC
TAATATTGCTATCAAAGAATACTCAATCAATGGCTCACTGTGACTGGCTT
TGTATAACGTGCATTTGTTTGGCATTTCTTGTCATCTCTCTGCATTCTTT
TGGAATTTATGTTTTGATCAAAACAAATCTGAACCTCGcagaaaacattg
aaattttcagctTATCGATTTCTTTATTATCATTGAGTGTGTACCAAACA
ATTCGTATTGTAATGGAAATCGAGTATCCTAATTATGAAAAATACTTTTA
CGGAATAACAGCTGCATTCTTCATCCCAATGTACAGTTCAATGATATTAT
TGACATTACAAAGATTCTTTGCCATTTGGTTGCATTTACGCTATGAATCA
ACTTGGGTTTTCCTCAAACGAACTCACATGGTTGCTGCATCCTGGATTGC
TTTTGTTCTATTTTTCATAGTTTCTTTAGCTCTTAATCTGACTGAAACCT
TAACGGTCAAGATCGTGTCCCAGTGGACCGCTACCGCAGGTGTTTTATTA
ACAAATGTCGTCTTTGTATCTATATACATATACATTTATATTAAATATCG
CCATGCAACACAAATTACGAGGGACTCATTGTATAGAAATcggaaaacta
aatttttcacACCTTTCATCATAtgtgcttcatttttcatcttcggaACA
ATGCCACATATGTTTCGAGCTGTCGTGGAAACTGCAGGCTTTCGGTATCA
CTTCGTTTGGTTTTGTTTAGATGGTATAAGTGACTctattgtttacattt
tcatgaatgaaaattttatgaGATGCTTTCGACGATGGAAGAACAGAAAT
GGTGTTGCAATTGTGTAGACACACATTCTTTCACAATCAATGTCATTCCT
TCTACAGTAAATGTTATTTAGCCATTAaaccaaatttttaattttgagcc
TGCAAcacaaaattcaaatcaaaatgtatccagatataattggcagtagG
CTGCTGTCATCCACTAacagattcgtgctccttatagaggatgcttaaca
agtgatatttcctttgtccagagatttgccgcctttagccgatatacggc
taaagacatttttacctggcgagtgtctacaaatataacataacgtaatg
tttacattttctgtgagacaccaaatcatagattggaaaatatatttaga
tttcgaaaaaaaagtagccggaaggaagtttgcttctttttcttcctcct
ttcttgtttaatgtggagattttgtaaaagattagaaattagatttattg
aatttaagtgacctgatgtatcttctgtgtgcaccaacaaatttttgctt
cacaaAACTACATTTAAATGCTCgaatttggacttgtatgagtgtataat
tttttaacaaactggattcgttgatcactttggctccagataattgtttt
gtcagttctacagatatgttgcagattatttcaaggtattttagttatgt
atatacagcaCATTTTGGGgctatattgaatatttctgacattactacAA
AAAGGAGTGTTAAATgtttaaacaaacaaaaaactgtTCTTTaactttgg
catttcacttttcgatactgtgtgtggcctttgtgtttatctttttcatg
tacttagcttcaattcttttgaAGAGATTGcagtgtttttggttgttttc
tttcacttttttgttcatatttgtatttttgagcttcgaccgaagagctg
aaggaaaagttttgatagatttacagaccagatatcttataaaagcaaaa
gtcaaaaataaatttacagactgtacaaaatgcgcgcatca Coding sequence (CDS) from alignment at scaffold_288:60666..63856 >TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_288:60666..63856 (Clytia hemisphaerica) ATGGCTCACTGTGACTGGCTTTGTATAACGTGCATTTGTTTGGCATTTCT TGTCATCTCTCTGCATTCTTTTGGAATTTATGTTTTGATCAAAACAAATC TGAACCTCGcagaaaacattgaaattttcagctTATCGATTTCTTTATTA TCATTGAGTGTGTACCAAACAATTCGTATTGTAATGGAAATCGAGTATCC TAATTATGAAAAATACTTTTACGGAATAACAGCTGCATTCTTCATCCCAA TGTACAGTTCAATGATATTATTGACATTACAAAGATTCTTTGCCATTTGG TTGCATTTACGCTATGAATCAACTTGGGTTTTCCTCAAACGAACTCACAT GGTTGCTGCATCCTGGATTGCTTTTGTTCTATTTTTCATAGTTTCTTTAG CTCTTAATCTGACTGAAACCTTAACGGTCAAGATCGTGTCCCAGTGGACC GCTACCGCAGGTGTTTTATTAACAAATGTCGTCTTTGTATCTATATACAT ATACATTTATATTAAATATCGCCATGCAACACAAATTACGAGGGACTCAT TGTATAGAAATcggaaaactaaatttttcacACCTTTCATCATAtgtgct tcatttttcatcttcggaACAATGCCACATATGTTTCGAGCTGTCGTGGA AACTGCAGGCTTTCGGTATCACTTCGTTTGGTTTTGTTTAGATGGTATAA GTGACTctattgtttacattttcatgaatgaaaattttatgaGATGCTTT CGACGATGGAAGAACAGAAATGGTGTTGCAATTGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057414-exon-scaffold_288-1491911889:60666..63856 | TCONS_00057414-exon-scaffold_288-1491911889:60666..63856 | Clytia hemisphaerica | exon |
TCONS_00057414-exon-scaffold_288-1510915933:60666..63856 | TCONS_00057414-exon-scaffold_288-1510915933:60666..63856 | Clytia hemisphaerica | exon |
TCONS_00057414-exon-scaffold_288-1575043694:60666..63856 | TCONS_00057414-exon-scaffold_288-1575043694:60666..63856 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_288 | supercontig | scaffold_288:60666..63856 . |
Blast
The following BLAST results are available for this feature:
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