TCONS_00057414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057414
Unique NameTCONS_00057414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=transcript|length=3191bp
tgatgcgcgcattttgtacagtctgtaaatttatttttgacttttgcttt
tataagatatctggtctgtaaatctatcaaaacttttccttcagctcttc
ggtcgaagctcaaaaatacaaatatgaacaaaaaagtgaaagaaaacaac
caaaaacactgCAATCTCTtcaaaagaattgaagctaagtacatgaaaaa
gataaacacaaaggccacacacagtatcgaaaagtgaaatgccaaagttA
AAGAacagttttttgtttgtttaaacATTTAACACTCCTTTTTgtagtaa
tgtcagaaatattcaatatagcCCCAAAATGtgctgtatatacataacta
aaataccttgaaataatctgcaacatatctgtagaactgacaaaacaatt
atctggagccaaagtgatcaacgaatccagtttgttaaaaaattatacac
tcatacaagtccaaattcGAGCATTTAAATGTAGTTttgtgaagcaaaaa
tttgttggtgcacacagaagatacatcaggtcacttaaattcaataaatc
taatttctaatcttttacaaaatctccacattaaacaagaaaggaggaag
aaaaagaagcaaacttccttccggctacttttttttcgaaatctaaatat
attttccaatctatgatttggtgtctcacagaaaatgtaaacattacgtt
atgttatatttgtagacactcgccaggtaaaaatgtctttagccgtatat
cggctaaaggcggcaaatctctggacaaaggaaatatcacttgttaagca
tcctctataaggagcacgaatctgtTAGTGGATGACAGCAGCctactgcc
aattatatctggatacattttgatttgaattttgtgTTGCAggctcaaaa
ttaaaaatttggttTAATGGCTAAATAACATTTACTGTAGAAGGAATGAC
ATTGATTGTGAAAGAATGTGTGTCTACACAATTGCAACACCATTTCTGTT
CTTCCATCGTCGAAAGCATCtcataaaattttcattcatgaaaatgtaaa
caatagAGTCACTTATACCATCTAAACAAAACCAAACGAAGTGATACCGA
AAGCCTGCAGTTTCCACGACAGCTCGAAACATATGTGGCATTGTtccgaa
gatgaaaaatgaagcacaTATGATGAAAGGTgtgaaaaatttagttttcc
gATTTCTATACAATGAGTCCCTCGTAATTTGTGTTGCATGGCGATATTTA
ATATAAATGTATATGTATATAGATACAAAGACGACATTTGTTAATAAAAC
ACCTGCGGTAGCGGTCCACTGGGACACGATCTTGACCGTTAAGGTTTCAG
TCAGATTAAGAGCTAAAGAAACTATGAAAAATAGAACAAAAGCAATCCAG
GATGCAGCAACCATGTGAGTTCGTTTGAGGAAAACCCAAGTTGATTCATA
GCGTAAATGCAACCAAATGGCAAAGAATCTTTGTAATGTCAATAATATCA
TTGAACTGTACATTGGGATGAAGAATGCAGCTGTTATTCCGTAAAAGTAT
TTTTCATAATTAGGATACTCGATTTCCATTACAATACGAATTGTTTGGTA
CACACTCAATGATAATAAAGAAATCGATAagctgaaaatttcaatgtttt
ctgCGAGGTTCAGATTTGTTTTGATCAAAACATAAATTCCAAAAGAATGC
AGAGAGATGACAAGAAATGCCAAACAAATGCACGTTATACAAAGCCAGTC
ACAGTGAGCCATTGATTGAGTATTCTTTGATAGCAATATTAGACTTGAAC
CTTATTTGCCGAAACCCTGCGTCAACTGATTCTTGCTTTAACTTAAATTA
TTGCAAAGACTCTCCAAATCGGAAGTTTCATCTCATTTTACGATGAAACT
TGCGCAACTTGGAAAGGGAAGTAAATGAATTAGGTCAAAAATTAGCCTCA
AATTAAGTAAAACTTCATTCTATTGGAGAGAACTCAAGAAAGCTATTAaa
tattctatgaaaaaaagaatgaataaaaCTATATAAATAATCTATAAATC
AAACCTGtccttttggtcaaaatttcccAGAAAAAGTACAACGTTTGAAG
CTGCAATTAACTTGGGTCTGTATATAATAGAAGAACCTCATCCGGATATA
ATAATCCTCCTACGCCTGAATCTTATTGGAAGTAAAGGTTTTGAACAATG
CGGACAATCAAGACACTGCTACTGTGCATGCGCAGACGTTGAACGATAAG
CAGCAACAAAAAGGCATTGTTTTAAAACTTgcaattttaattaaaaaaat
cttgaatatttCTGTACCATTTTCAAGGGTCAAAGGACAGAAGAAATTTC
AAGAACCTTCGTTCCGCTGGAAACGTAAGAACATAAAAACAAAGCGTATA
AGAACACACAGCTTTTCTTTCAATGCTTCGAATTTAAAACCATTATTCAA
AAACACGTAGGGATTTTTCGTACAAATTTCGATGACGTTAATCTCCCGTT
attaatatttatttcaacgttaaaaaaactaatttttagcCATGTTGACA
AAGAGATGCTTAGGTTAGAATAAAAAAAGGATAGACTTTACTAGATCaac
cattgattttaaagccaCAAAGGGGTTAGGGGGGATTCTTTAacttttct
caggcaagaaaagtgAGACCGTATGTAAGATGCGCTCGTAAAATGTTgct
ctttctttgttttcaagcggcatatttttcgaaataaatttattttcaat
ttggcGTTTGTTTGAAAACCACGCGTTTTGGATAGGAATTTCAGATCTAG
CTACTTCGGGGATTTGAAATCAATGAGATCAACTTAAATCTTCCACAAAA
GATGAAGCTTGACTTCTTTCATACTTGGTGCAAGAACACACATTTATTAA
AATACTTCTTCAGAGCCTTGATAGTACACACACAAGTACACTCCAAGTAT
ATTTAACGTCTCCTGGAATAAACATCCGTTGAAAGCGAGGTTATGGTAAA
TTAAACCACCAGCCTTTTCAAGGACCATCATAAAGTATCGTACGAAATAC
GGTGGCCATTCGTAAAGgaataaagaacttttttccTGTAATGGTCGTCA
CCTTGCAACCTGGACACTGTAGGACCCTCTCCCGAACCATAAAATGATCT
CGTACGAGATGTCCATTCGTATAAAAGTAAAGAAGAGCATA
Run BLAST on NCBI

protein sequence of TCONS_00057414-protein

>TCONS_00057414-protein ID=TCONS_00057414-protein|Name=TCONS_00057414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MAHCDWLCITCICLAFLVISLHSFGIYVLIKTNLNLAENIEIFSLSISLL
SLSVYQTIRIVMEIEYPNYEKYFYGITAAFFIPMYSSMILLTLQRFFAIW
LHLRYESTWVFLKRTHMVAASWIAFVLFFIVSLALNLTETLTVKIVSQWT
ATAGVLLTNVVFVSIYIYIYIKYRHATQITRDSLYRNRKTKFFTPFIICA
SFFIFGTMPHMFRAVVETAGFRYHFVWFCLDGISDSIVYIFMNENFMRCF
RRWKNRNGVAIV
Run BLAST on NCBI

transcript from alignment at scaffold_288:60666..63856

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=transcript|length=3191bp|location=Sequence derived from alignment at scaffold_288:60666..63856 (Clytia hemisphaerica)
TATGCTCTTCTTTACTTTTATACGAATGGACATCTCGTACGAGATCATTT TATGGTTCGGGAGAGGGTCCTACAGTGTCCAGGTTGCAAGGTGACGACCA TTACAggaaaaaagttctttattcCTTTACGAATGGCCACCGTATTTCGT ACGATACTTTATGATGGTCCTTGAAAAGGCTGGTGGTTTAATTTACCATA ACCTCGCTTTCAACGGATGTTTATTCCAGGAGACGTTAAATATACTTGGA GTGTACTTGTGTGTGTACTATCAAGGCTCTGAAGAAGTATTTTAATAAAT GTGTGTTCTTGCACCAAGTATGAAAGAAGTCAAGCTTCATCTTTTGTGGA AGATTTAAGTTGATCTCATTGATTTCAAATCCCCGAAGTAGCTAGATCTG AAATTCCTATCCAAAACGCGTGGTTTTCAAACAAACgccaaattgaaaat aaatttatttcgaaaaatatgccgcttgaaaacaaagaaagagcAACATT TTACGAGCGCATCTTACATACGGTCTcacttttcttgcctgagaaaagtT AAAGAATCCCCCCTAACCCCTTTGtggctttaaaatcaatggttGATCTA GTAAAGTCTATCCTTTTTTTATTCTAACCTAAGCATCTCTTTGTCAACAT GgctaaaaattagtttttttaacgttgaaataaatattaatAACGGGAGA TTAACGTCATCGAAATTTGTACGAAAAATCCCTACGTGTTTTTGAATAAT GGTTTTAAATTCGAAGCATTGAAAGAAAAGCTGTGTGTTCTTATACGCTT TGTTTTTATGTTCTTACGTTTCCAGCGGAACGAAGGTTCTTGAAATTTCT TCTGTCCTTTGACCCTTGAAAATGGTACAGaaatattcaagattttttta attaaaattgcAAGTTTTAAAACAATGCCTTTTTGTTGCTGCTTATCGTT CAACGTCTGCGCATGCACAGTAGCAGTGTCTTGATTGTCCGCATTGTTCA AAACCTTTACTTCCAATAAGATTCAGGCGTAGGAGGATTATTATATCCGG ATGAGGTTCTTCTATTATATACAGACCCAAGTTAATTGCAGCTTCAAACG TTGTACTTTTTCTgggaaattttgaccaaaaggaCAGGTTTGATTTATAG ATTATTTATATAGttttattcattctttttttcatagaatattTAATAGC TTTCTTGAGTTCTCTCCAATAGAATGAAGTTTTACTTAATTTGAGGCTAA TTTTTGACCTAATTCATTTACTTCCCTTTCCAAGTTGCGCAAGTTTCATC GTAAAATGAGATGAAACTTCCGATTTGGAGAGTCTTTGCAATAATTTAAG TTAAAGCAAGAATCAGTTGACGCAGGGTTTCGGCAAATAAGGTTCAAGTC TAATATTGCTATCAAAGAATACTCAATCAATGGCTCACTGTGACTGGCTT TGTATAACGTGCATTTGTTTGGCATTTCTTGTCATCTCTCTGCATTCTTT TGGAATTTATGTTTTGATCAAAACAAATCTGAACCTCGcagaaaacattg aaattttcagctTATCGATTTCTTTATTATCATTGAGTGTGTACCAAACA ATTCGTATTGTAATGGAAATCGAGTATCCTAATTATGAAAAATACTTTTA CGGAATAACAGCTGCATTCTTCATCCCAATGTACAGTTCAATGATATTAT TGACATTACAAAGATTCTTTGCCATTTGGTTGCATTTACGCTATGAATCA ACTTGGGTTTTCCTCAAACGAACTCACATGGTTGCTGCATCCTGGATTGC TTTTGTTCTATTTTTCATAGTTTCTTTAGCTCTTAATCTGACTGAAACCT TAACGGTCAAGATCGTGTCCCAGTGGACCGCTACCGCAGGTGTTTTATTA ACAAATGTCGTCTTTGTATCTATATACATATACATTTATATTAAATATCG CCATGCAACACAAATTACGAGGGACTCATTGTATAGAAATcggaaaacta aatttttcacACCTTTCATCATAtgtgcttcatttttcatcttcggaACA ATGCCACATATGTTTCGAGCTGTCGTGGAAACTGCAGGCTTTCGGTATCA CTTCGTTTGGTTTTGTTTAGATGGTATAAGTGACTctattgtttacattt tcatgaatgaaaattttatgaGATGCTTTCGACGATGGAAGAACAGAAAT GGTGTTGCAATTGTGTAGACACACATTCTTTCACAATCAATGTCATTCCT TCTACAGTAAATGTTATTTAGCCATTAaaccaaatttttaattttgagcc TGCAAcacaaaattcaaatcaaaatgtatccagatataattggcagtagG CTGCTGTCATCCACTAacagattcgtgctccttatagaggatgcttaaca agtgatatttcctttgtccagagatttgccgcctttagccgatatacggc taaagacatttttacctggcgagtgtctacaaatataacataacgtaatg tttacattttctgtgagacaccaaatcatagattggaaaatatatttaga tttcgaaaaaaaagtagccggaaggaagtttgcttctttttcttcctcct ttcttgtttaatgtggagattttgtaaaagattagaaattagatttattg aatttaagtgacctgatgtatcttctgtgtgcaccaacaaatttttgctt cacaaAACTACATTTAAATGCTCgaatttggacttgtatgagtgtataat tttttaacaaactggattcgttgatcactttggctccagataattgtttt gtcagttctacagatatgttgcagattatttcaaggtattttagttatgt atatacagcaCATTTTGGGgctatattgaatatttctgacattactacAA AAAGGAGTGTTAAATgtttaaacaaacaaaaaactgtTCTTTaactttgg catttcacttttcgatactgtgtgtggcctttgtgtttatctttttcatg tacttagcttcaattcttttgaAGAGATTGcagtgtttttggttgttttc tttcacttttttgttcatatttgtatttttgagcttcgaccgaagagctg aaggaaaagttttgatagatttacagaccagatatcttataaaagcaaaa gtcaaaaataaatttacagactgtacaaaatgcgcgcatca

Coding sequence (CDS) from alignment at scaffold_288:60666..63856

>TCONS_00057414 ID=TCONS_00057414|Name=TCONS_00057414|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_288:60666..63856 (Clytia hemisphaerica)
ATGGCTCACTGTGACTGGCTTTGTATAACGTGCATTTGTTTGGCATTTCT
TGTCATCTCTCTGCATTCTTTTGGAATTTATGTTTTGATCAAAACAAATC
TGAACCTCGcagaaaacattgaaattttcagctTATCGATTTCTTTATTA
TCATTGAGTGTGTACCAAACAATTCGTATTGTAATGGAAATCGAGTATCC
TAATTATGAAAAATACTTTTACGGAATAACAGCTGCATTCTTCATCCCAA
TGTACAGTTCAATGATATTATTGACATTACAAAGATTCTTTGCCATTTGG
TTGCATTTACGCTATGAATCAACTTGGGTTTTCCTCAAACGAACTCACAT
GGTTGCTGCATCCTGGATTGCTTTTGTTCTATTTTTCATAGTTTCTTTAG
CTCTTAATCTGACTGAAACCTTAACGGTCAAGATCGTGTCCCAGTGGACC
GCTACCGCAGGTGTTTTATTAACAAATGTCGTCTTTGTATCTATATACAT
ATACATTTATATTAAATATCGCCATGCAACACAAATTACGAGGGACTCAT
TGTATAGAAATcggaaaactaaatttttcacACCTTTCATCATAtgtgct
tcatttttcatcttcggaACAATGCCACATATGTTTCGAGCTGTCGTGGA
AACTGCAGGCTTTCGGTATCACTTCGTTTGGTTTTGTTTAGATGGTATAA
GTGACTctattgtttacattttcatgaatgaaaattttatgaGATGCTTT
CGACGATGGAAGAACAGAAATGGTGTTGCAATTGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036173XLOC_036173Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057414-proteinTCONS_00057414-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057414-exon-scaffold_288-1491911889:60666..63856TCONS_00057414-exon-scaffold_288-1491911889:60666..63856Clytia hemisphaericaexon
TCONS_00057414-exon-scaffold_288-1510915933:60666..63856TCONS_00057414-exon-scaffold_288-1510915933:60666..63856Clytia hemisphaericaexon
TCONS_00057414-exon-scaffold_288-1575043694:60666..63856TCONS_00057414-exon-scaffold_288-1575043694:60666..63856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:60666..63856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.372965 tpm) - - (2.50535 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.623474 0.517611 1.30123 1.53204 0.571958 0.372965 0.821798 1.00402 0.601448 0.89317 0.611449 0.687125 0.652588 0.574447 0.583686 0.625515 0.670407 0.448921 0.43189 0.59202 1.08332 0.908007 0.504603 0.542132 1.69228 2.50535 0.976486 1.36896 0.755135 0.765741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50010001500200025003000Sequence
Match NameE-valueIdentityDescription
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