TCONS_00057445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057445
Unique NameTCONS_00057445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057445 ID=TCONS_00057445|Name=TCONS_00057445|organism=Clytia hemisphaerica|type=transcript|length=690bp
ACAGAAATGAAGAACGaagtcttcaaaaatgttgaagaCCAATGCAGTTG
TGCCATTTGTTTGGAGTTAGCAGATGAAGCCGTGGAGTGTAGCCATTGTC
ATCAAGTGTTTTGCCAGAAATGTATCGTTGGGTTGGAAGGTTGCCCGAGT
TGCCGTCAAACTCCGTTTACAACACAGCCCAATGTGATTCTAAGAAGAAT
ATTCGGTAGTATGATAACAAATTGCACGAATGAGGGGTGTAAAGAACGAC
CAACTCGCTCAAATCTAACATCGCATTTGGAAAAATGTGAATGGTCTACA
ATTGAATGTCCAAACGATGGATGCGATCAAAAGTATCAGAAATTTGCTTC
AGAGCAACACAAAAGGCAATGCGTGTATCGTTTGGAGGCTTGCATCGGAT
GTGGTCATCAATACAAGATGCTGGATCTGGCAAATCACCAGGATCAATGC
TTATTTGTCGACGTTCCTTGCATGAATTCCAATTGTAATGAGCGTTTCTT
ACGGAAAGATGAGAGCTCTCATATCAGTGTTTGCAAACAGCAGATGATAC
GATGTTCGTTCTGTTTCTTTTCCGATACCAGGATCCAAGTATTGCATCAT
ACAATCGACATCCATTACCAAGAAGCTGTTGGCCCGATGTCCTCTTTGGC
TCCCAGGTCGTTTGGTGCAAGTAGTCATCAACCGTGATAC
Run BLAST on NCBI

protein sequence of TCONS_00057445-protein

>TCONS_00057445-protein ID=TCONS_00057445-protein|Name=TCONS_00057445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
TEMKNEVFKNVEDQCSCAICLELADEAVECSHCHQVFCQKCIVGLEGCPS
CRQTPFTTQPNVILRRIFGSMITNCTNEGCKERPTRSNLTSHLEKCEWST
IECPNDGCDQKYQKFASEQHKRQCVYRLEACIGCGHQYKMLDLANHQDQC
LFVDVPCMNSNCNERFLRKDESSHISVCKQQMIRCSFCFFSDTRIQVLHH
TIDIHYQEAVGPMSSLAPRSFGASSHQP
Run BLAST on NCBI

transcript from alignment at scaffold_288:767193..767882

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057445 ID=TCONS_00057445|Name=TCONS_00057445|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at scaffold_288:767193..767882 (Clytia hemisphaerica)
GTATCACGGTTGATGACTACTTGCACCAAACGACCTGGGAGCCAAAGAGG
ACATCGGGCCAACAGCTTCTTGGTAATGGATGTCGATTGTATGATGCAAT
ACTTGGATCCTGGTATCGGAAAAGAAACAGAACGAACATCGTATCATCTG
CTGTTTGCAAACACTGATATGAGAGCTCTCATCTTTCCGTAAGAAACGCT
CATTACAATTGGAATTCATGCAAGGAACGTCGACAAATAAGCATTGATCC
TGGTGATTTGCCAGATCCAGCATCTTGTATTGATGACCACATCCGATGCA
AGCCTCCAAACGATACACGCATTGCCTTTTGTGTTGCTCTGAAGCAAATT
TCTGATACTTTTGATCGCATCCATCGTTTGGACATTCAATTGTAGACCAT
TCACATTTTTCCAAATGCGATGTTAGATTTGAGCGAGTTGGTCGTTCTTT
ACACCCCTCATTCGTGCAATTTGTTATCATACTACCGAATATTCTTCTTA
GAATCACATTGGGCTGTGTTGTAAACGGAGTTTGACGGCAACTCGGGCAA
CCTTCCAACCCAACGATACATTTCTGGCAAAACACTTGATGACAATGGCT
ACACTCCACGGCTTCATCTGCTAACTCCAAACAAATGGCACAACTGCATT
GGtcttcaacatttttgaagacttCGTTCTTCATTTCTGT

Coding sequence (CDS) from alignment at scaffold_288:767193..767882

>TCONS_00057445 ID=TCONS_00057445|Name=TCONS_00057445|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_288:767193..767882 (Clytia hemisphaerica)
TCACGGTTGATGACTACTTGCACCAAACGACCTGGGAGCCAAAGAGGACA
TCGGGCCAACAGCTTCTTGGTAATGGATGTCGATTGTATGATGCAATACT
TGGATCCTGGTATCGGAAAAGAAACAGAACGAACATCGTATCATCTGCTG
TTTGCAAACACTGATATGAGAGCTCTCATCTTTCCGTAAGAAACGCTCAT
TACAATTGGAATTCATGCAAGGAACGTCGACAAATAAGCATTGATCCTGG
TGATTTGCCAGATCCAGCATCTTGTATTGATGACCACATCCGATGCAAGC
CTCCAAACGATACACGCATTGCCTTTTGTGTTGCTCTGAAGCAAATTTCT
GATACTTTTGATCGCATCCATCGTTTGGACATTCAATTGTAGACCATTCA
CATTTTTCCAAATGCGATGTTAGATTTGAGCGAGTTGGTCGTTCTTTACA
CCCCTCATTCGTGCAATTTGTTATCATACTACCGAATATTCTTCTTAGAA
TCACATTGGGCTGTGTTGTAAACGGAGTTTGACGGCAACTCGGGCAACCT
TCCAACCCAACGATACATTTCTGGCAAAACACTTGATGACAATGGCTACA
CTCCACGGCTTCATCTGCTAACTCCAAACAAATGGCACAACTGCATTGGt
cttcaacatttttgaagacttCGTTCTTCATTTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036203XLOC_036203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057445-exon-scaffold_288-1491911889:767193..767882TCONS_00057445-exon-scaffold_288-1491911889:767193..767882Clytia hemisphaericaexon
TCONS_00057445-exon-scaffold_288-1510915933:767193..767882TCONS_00057445-exon-scaffold_288-1510915933:767193..767882Clytia hemisphaericaexon
TCONS_00057445-exon-scaffold_288-1575043694:767193..767882TCONS_00057445-exon-scaffold_288-1575043694:767193..767882Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057445-proteinTCONS_00057445-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:767193..767882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48195	2.69376	1.80755	2.377	0.397869	0.235801	1.3052	1.31999	0.655253	2.26796	1.32718	1.35828	2.9098	2.44528	5.18767	7.48909	2.89233	4.20768	5.00372	5.20997	1.07179	1.1847	2.52113	2.09646	3.23617	2.32273	2.25398	4.75752	2.40432	1.7263
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR001841Znf_RING
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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