|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057486 ID=TCONS_00057486|Name=TCONS_00057486|organism=Clytia hemisphaerica|type=transcript|length=1355bp
CGTTCAGAGACGTCGAGGGAATGGAGAGCGAATAGAGAACATACTGCAAA
GCTAAAGAAATATTTGAACCGGAAGACAAAAAGTTTAGAGTAAAACTTTG
AAGGTTATTTGCACACTAAAAACAGCATGGAGATTTTCTTAGGAATGAGT
GGTGGGCCTAGCGAATCTTCAAGGAATAAATCAAAACGCATCAATTCAAT
GAAGCAACGAACGTCTTCGATTAAGAAGCATGAACATAAACCCTTAAATT
TATTCAGAAAACAAGACCCTCGTTTCTTTATGCCGTTATACCACCTTCAG
GGAAAATATTCACCAAGGTATCAAGAACTCGAAGACTTGGATAACCATGA
TGTGATGAACCTTTTCGAAATCTCATTAGAGATATTAAACAGACGAGGCG
TCCGCCCTCTATTAAAGCCATTGGAGGGCGTTCATAATTTAGCGGAATAT
TTTTTCGAGAAGATCGGTAAAGCAAACCCAGGTGCTCATTTATGCGTACA
ATGCCGTGACTATGATAAAGATGAAAACCGAACTGACGATTTTTACTACA
TGAATTTAATGGAGATTTCAAAGAAGCGGACAATCTTGTGTTCTGATTGC
ATGAAAACAGTGGTCTCAACACACGTCACTGGAGAGGTTGACGAGCTTTT
AGAGGaattagaaaatttgagaaaggaACAACCTGGTGGAGTCAACGTTG
ATCCGTTTCTTGTTTCATGTGGATTTTAAGACAAACCGCTGATGGAAACA
CTGGCGACTTTATGTTATAAGCACTTATAAAAATGGCAGGAtgactgaaa
cgatttggaaCGACCCTCAGTTCTGACCTGTaaaattgaggacggtaaaa
atgctcatttgatgtcgtcctcagtcaatcaggatctagAAAAATCGAAA
GCTAACcatctccgtcgcagaaaaaaacaaataaataaactcgATACTAC
TATAAAACAGCAATTTCGAACAGCTGAATTGGATGGACGGAAgtgaaaat
agaaaagggggGTCGAACCTCcttgattttagaaaaacaattaAGAATTA
CTTGTTTAAATACTCAAAACTTATACTCCAGGTATTCTGTACATACAACG
TAGAAGACTGTAAAtataactttcaaaaatatttttcattggcAAGCATT
AAAAATGTATCCATACACTAAAATATTATGAAATTGCATCTAATTATAAA
ATTTCTCGAATCCTTGAAGCATCtcctcaaatattttttcactgTATATG
TATTTTATTAGCTTTTGATAATGTATGGAAGCTACCAagagaatacacgt
ttttatataagaacaaacaatataAGAGCCTAAGGCTTCGATAGCAAAAA
TATGT Run BLAST on NCBI protein sequence of TCONS_00057486-protein >TCONS_00057486-protein ID=TCONS_00057486-protein|Name=TCONS_00057486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MEIFLGMSGGPSESSRNKSKRINSMKQRTSSIKKHEHKPLNLFRKQDPRF
FMPLYHLQGKYSPRYQELEDLDNHDVMNLFEISLEILNRRGVRPLLKPLE
GVHNLAEYFFEKIGKANPGAHLCVQCRDYDKDENRTDDFYYMNLMEISKK
RTILCSDCMKTVVSTHVTGEVDELLEELENLRKEQPGGVNVDPFLVSCGF Run BLAST on NCBI transcript from alignment at scaffold_289:53964..55318 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057486 ID=TCONS_00057486|Name=TCONS_00057486|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at scaffold_289:53964..55318 (Clytia hemisphaerica)
ACATATTTTTGCTATCGAAGCCTTAGGCTCTtatattgtttgttcttata
taaaaacgtgtattctctTGGTAGCTTCCATACATTATCAAAAGCTAATA
AAATACATATAcagtgaaaaaatatttgaggaGATGCTTCAAGGATTCGA
GAAATTTTATAATTAGATGCAATTTCATAATATTTTAGTGTATGGATACA
TTTTTAATGCTTgccaatgaaaaatatttttgaaagttataTTTACAGTC
TTCTACGTTGTATGTACAGAATACCTGGAGTATAAGTTTTGAGTATTTAA
ACAAGTAATTCTtaattgtttttctaaaatcaagGAGGTTCGACccccct
tttctattttcacTTCCGTCCATCCAATTCAGCTGTTCGAAATTGCTGTT
TTATAGTAGTATcgagtttatttatttgtttttttctgcgacggagatgG
TTAGCTTTCGATTTTTctagatcctgattgactgaggacgacatcaaatg
agcatttttaccgtcctcaattttACAGGTCAGAACTGAGGGTCGttcca
aatcgtttcagtcaTCCTGCCATTTTTATAAGTGCTTATAACATAAAGTC
GCCAGTGTTTCCATCAGCGGTTTGTCTTAAAATCCACATGAAACAAGAAA
CGGATCAACGTTGACTCCACCAGGTTGTtcctttctcaaattttctaatt
CCTCTAAAAGCTCGTCAACCTCTCCAGTGACGTGTGTTGAGACCACTGTT
TTCATGCAATCAGAACACAAGATTGTCCGCTTCTTTGAAATCTCCATTAA
ATTCATGTAGTAAAAATCGTCAGTTCGGTTTTCATCTTTATCATAGTCAC
GGCATTGTACGCATAAATGAGCACCTGGGTTTGCTTTACCGATCTTCTCG
AAAAAATATTCCGCTAAATTATGAACGCCCTCCAATGGCTTTAATAGAGG
GCGGACGCCTCGTCTGTTTAATATCTCTAATGAGATTTCGAAAAGGTTCA
TCACATCATGGTTATCCAAGTCTTCGAGTTCTTGATACCTTGGTGAATAT
TTTCCCTGAAGGTGGTATAACGGCATAAAGAAACGAGGGTCTTGTTTTCT
GAATAAATTTAAGGGTTTATGTTCATGCTTCTTAATCGAAGACGTTCGTT
GCTTCATTGAATTGATGCGTTTTGATTTATTCCTTGAAGATTCGCTAGGC
CCACCACTCATTCCTAAGAAAATCTCCATGCTGTTTTTAGTGTGCAAATA
ACCTTCAAAGTTTTACTCTAAACTTTTTGTCTTCCGGTTCAAATATTTCT
TTAGCTTTGCAGTATGTTCTCTATTCGCTCTCCATTCCCTCGACGTCTCT
GAACG Coding sequence (CDS) from alignment at scaffold_289:53964..55318 >TCONS_00057486 ID=TCONS_00057486|Name=TCONS_00057486|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_289:53964..55318 (Clytia hemisphaerica)
TTAAAATCCACATGAAACAAGAAACGGATCAACGTTGACTCCACCAGGTT
GTtcctttctcaaattttctaattCCTCTAAAAGCTCGTCAACCTCTCCA
GTGACGTGTGTTGAGACCACTGTTTTCATGCAATCAGAACACAAGATTGT
CCGCTTCTTTGAAATCTCCATTAAATTCATGTAGTAAAAATCGTCAGTTC
GGTTTTCATCTTTATCATAGTCACGGCATTGTACGCATAAATGAGCACCT
GGGTTTGCTTTACCGATCTTCTCGAAAAAATATTCCGCTAAATTATGAAC
GCCCTCCAATGGCTTTAATAGAGGGCGGACGCCTCGTCTGTTTAATATCT
CTAATGAGATTTCGAAAAGGTTCATCACATCATGGTTATCCAAGTCTTCG
AGTTCTTGATACCTTGGTGAATATTTTCCCTGAAGGTGGTATAACGGCAT
AAAGAAACGAGGGTCTTGTTTTCTGAATAAATTTAAGGGTTTATGTTCAT
GCTTCTTAATCGAAGACGTTCGTTGCTTCATTGAATTGATGCGTTTTGAT
TTATTCCTTGAAGATTCGCTAGGCCCACCACTCATTCCTAAGAAAATCTC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057486-exon-scaffold_289-1491911889:53964..55318 | TCONS_00057486-exon-scaffold_289-1491911889:53964..55318 | Clytia hemisphaerica | exon |
| TCONS_00057486-exon-scaffold_289-1510915933:53964..55318 | TCONS_00057486-exon-scaffold_289-1510915933:53964..55318 | Clytia hemisphaerica | exon |
| TCONS_00057486-exon-scaffold_289-1575043694:53964..55318 | TCONS_00057486-exon-scaffold_289-1575043694:53964..55318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:53964..55318 . |
Blast
The following BLAST results are available for this feature:
|
