TCONS_00057486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057486
Unique NameTCONS_00057486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057486 ID=TCONS_00057486|Name=TCONS_00057486|organism=Clytia hemisphaerica|type=transcript|length=1355bp
CGTTCAGAGACGTCGAGGGAATGGAGAGCGAATAGAGAACATACTGCAAA
GCTAAAGAAATATTTGAACCGGAAGACAAAAAGTTTAGAGTAAAACTTTG
AAGGTTATTTGCACACTAAAAACAGCATGGAGATTTTCTTAGGAATGAGT
GGTGGGCCTAGCGAATCTTCAAGGAATAAATCAAAACGCATCAATTCAAT
GAAGCAACGAACGTCTTCGATTAAGAAGCATGAACATAAACCCTTAAATT
TATTCAGAAAACAAGACCCTCGTTTCTTTATGCCGTTATACCACCTTCAG
GGAAAATATTCACCAAGGTATCAAGAACTCGAAGACTTGGATAACCATGA
TGTGATGAACCTTTTCGAAATCTCATTAGAGATATTAAACAGACGAGGCG
TCCGCCCTCTATTAAAGCCATTGGAGGGCGTTCATAATTTAGCGGAATAT
TTTTTCGAGAAGATCGGTAAAGCAAACCCAGGTGCTCATTTATGCGTACA
ATGCCGTGACTATGATAAAGATGAAAACCGAACTGACGATTTTTACTACA
TGAATTTAATGGAGATTTCAAAGAAGCGGACAATCTTGTGTTCTGATTGC
ATGAAAACAGTGGTCTCAACACACGTCACTGGAGAGGTTGACGAGCTTTT
AGAGGaattagaaaatttgagaaaggaACAACCTGGTGGAGTCAACGTTG
ATCCGTTTCTTGTTTCATGTGGATTTTAAGACAAACCGCTGATGGAAACA
CTGGCGACTTTATGTTATAAGCACTTATAAAAATGGCAGGAtgactgaaa
cgatttggaaCGACCCTCAGTTCTGACCTGTaaaattgaggacggtaaaa
atgctcatttgatgtcgtcctcagtcaatcaggatctagAAAAATCGAAA
GCTAACcatctccgtcgcagaaaaaaacaaataaataaactcgATACTAC
TATAAAACAGCAATTTCGAACAGCTGAATTGGATGGACGGAAgtgaaaat
agaaaagggggGTCGAACCTCcttgattttagaaaaacaattaAGAATTA
CTTGTTTAAATACTCAAAACTTATACTCCAGGTATTCTGTACATACAACG
TAGAAGACTGTAAAtataactttcaaaaatatttttcattggcAAGCATT
AAAAATGTATCCATACACTAAAATATTATGAAATTGCATCTAATTATAAA
ATTTCTCGAATCCTTGAAGCATCtcctcaaatattttttcactgTATATG
TATTTTATTAGCTTTTGATAATGTATGGAAGCTACCAagagaatacacgt
ttttatataagaacaaacaatataAGAGCCTAAGGCTTCGATAGCAAAAA
TATGT
Run BLAST on NCBI

protein sequence of TCONS_00057486-protein

>TCONS_00057486-protein ID=TCONS_00057486-protein|Name=TCONS_00057486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MEIFLGMSGGPSESSRNKSKRINSMKQRTSSIKKHEHKPLNLFRKQDPRF
FMPLYHLQGKYSPRYQELEDLDNHDVMNLFEISLEILNRRGVRPLLKPLE
GVHNLAEYFFEKIGKANPGAHLCVQCRDYDKDENRTDDFYYMNLMEISKK
RTILCSDCMKTVVSTHVTGEVDELLEELENLRKEQPGGVNVDPFLVSCGF
Run BLAST on NCBI

transcript from alignment at scaffold_289:53964..55318

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057486 ID=TCONS_00057486|Name=TCONS_00057486|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at scaffold_289:53964..55318 (Clytia hemisphaerica)
ACATATTTTTGCTATCGAAGCCTTAGGCTCTtatattgtttgttcttata taaaaacgtgtattctctTGGTAGCTTCCATACATTATCAAAAGCTAATA AAATACATATAcagtgaaaaaatatttgaggaGATGCTTCAAGGATTCGA GAAATTTTATAATTAGATGCAATTTCATAATATTTTAGTGTATGGATACA TTTTTAATGCTTgccaatgaaaaatatttttgaaagttataTTTACAGTC TTCTACGTTGTATGTACAGAATACCTGGAGTATAAGTTTTGAGTATTTAA ACAAGTAATTCTtaattgtttttctaaaatcaagGAGGTTCGACccccct tttctattttcacTTCCGTCCATCCAATTCAGCTGTTCGAAATTGCTGTT TTATAGTAGTATcgagtttatttatttgtttttttctgcgacggagatgG TTAGCTTTCGATTTTTctagatcctgattgactgaggacgacatcaaatg agcatttttaccgtcctcaattttACAGGTCAGAACTGAGGGTCGttcca aatcgtttcagtcaTCCTGCCATTTTTATAAGTGCTTATAACATAAAGTC GCCAGTGTTTCCATCAGCGGTTTGTCTTAAAATCCACATGAAACAAGAAA CGGATCAACGTTGACTCCACCAGGTTGTtcctttctcaaattttctaatt CCTCTAAAAGCTCGTCAACCTCTCCAGTGACGTGTGTTGAGACCACTGTT TTCATGCAATCAGAACACAAGATTGTCCGCTTCTTTGAAATCTCCATTAA ATTCATGTAGTAAAAATCGTCAGTTCGGTTTTCATCTTTATCATAGTCAC GGCATTGTACGCATAAATGAGCACCTGGGTTTGCTTTACCGATCTTCTCG AAAAAATATTCCGCTAAATTATGAACGCCCTCCAATGGCTTTAATAGAGG GCGGACGCCTCGTCTGTTTAATATCTCTAATGAGATTTCGAAAAGGTTCA TCACATCATGGTTATCCAAGTCTTCGAGTTCTTGATACCTTGGTGAATAT TTTCCCTGAAGGTGGTATAACGGCATAAAGAAACGAGGGTCTTGTTTTCT GAATAAATTTAAGGGTTTATGTTCATGCTTCTTAATCGAAGACGTTCGTT GCTTCATTGAATTGATGCGTTTTGATTTATTCCTTGAAGATTCGCTAGGC CCACCACTCATTCCTAAGAAAATCTCCATGCTGTTTTTAGTGTGCAAATA ACCTTCAAAGTTTTACTCTAAACTTTTTGTCTTCCGGTTCAAATATTTCT TTAGCTTTGCAGTATGTTCTCTATTCGCTCTCCATTCCCTCGACGTCTCT GAACG

Coding sequence (CDS) from alignment at scaffold_289:53964..55318

>TCONS_00057486 ID=TCONS_00057486|Name=TCONS_00057486|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_289:53964..55318 (Clytia hemisphaerica)
TTAAAATCCACATGAAACAAGAAACGGATCAACGTTGACTCCACCAGGTT
GTtcctttctcaaattttctaattCCTCTAAAAGCTCGTCAACCTCTCCA
GTGACGTGTGTTGAGACCACTGTTTTCATGCAATCAGAACACAAGATTGT
CCGCTTCTTTGAAATCTCCATTAAATTCATGTAGTAAAAATCGTCAGTTC
GGTTTTCATCTTTATCATAGTCACGGCATTGTACGCATAAATGAGCACCT
GGGTTTGCTTTACCGATCTTCTCGAAAAAATATTCCGCTAAATTATGAAC
GCCCTCCAATGGCTTTAATAGAGGGCGGACGCCTCGTCTGTTTAATATCT
CTAATGAGATTTCGAAAAGGTTCATCACATCATGGTTATCCAAGTCTTCG
AGTTCTTGATACCTTGGTGAATATTTTCCCTGAAGGTGGTATAACGGCAT
AAAGAAACGAGGGTCTTGTTTTCTGAATAAATTTAAGGGTTTATGTTCAT
GCTTCTTAATCGAAGACGTTCGTTGCTTCATTGAATTGATGCGTTTTGAT
TTATTCCTTGAAGATTCGCTAGGCCCACCACTCATTCCTAAGAAAATCTC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036227XLOC_036227Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057486-proteinTCONS_00057486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057486-exon-scaffold_289-1491911889:53964..55318TCONS_00057486-exon-scaffold_289-1491911889:53964..55318Clytia hemisphaericaexon
TCONS_00057486-exon-scaffold_289-1510915933:53964..55318TCONS_00057486-exon-scaffold_289-1510915933:53964..55318Clytia hemisphaericaexon
TCONS_00057486-exon-scaffold_289-1575043694:53964..55318TCONS_00057486-exon-scaffold_289-1575043694:53964..55318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:53964..55318 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.16186 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247663 0.0905665 0.140208 0.137172 0 0.0329902 0.159205 0.558922 0.130438 0.129255 0.125458 0.0824711 2.16186 1.43259 1.28326 1.396 0.2324 0.166742 0.131636 0.0344368 0.389114 0.262795 0.567931 0.258166 0 0.118657 0.339595 0.181213 0.584134 0.665157
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
20040060080010001200Sequence
Match NameE-valueIdentityDescription
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