Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057503 ID=TCONS_00057503|Name=TCONS_00057503|organism=Clytia hemisphaerica|type=transcript|length=841bp ATGGAAATGGTGTCTCAACGAAGTCAGTCAAATCAATTGTAAGAAGTTTT CCAGGTGCTGATTCAACTGATATGATCGACTACTTGAAACCGTTGTTAAA TAAAAAGAAGCCAAAGTATCTCATATTACATGTAGGTACAAACGATATCA CATCTGGGTGCGACAcagttaaaaaccttgaaaaaatccGAGAAATGATC AATCAAATCACTCCTGAAACAGAGCTAATCATATCAAATGTGATTACTCG CGATGATAAACAAGGAATTCAATCTGAAGTAAATGGTATTAATAGTGTTC TTCTTAGTGTTGTCCAAAAAGAAATTGCACCTAAATGGCACTGGAATTTC ACgttttgctcaaaatttgaaagaatttatATTGGATAGTTATTGTTGAG ATGAAATTGATGACCAGAATGATGATGTTCTTGAACCTGACTTGGACGAG CTTAGTAATGGTTATTTGAATGGTTGGAAAtctttgcaaaatttgaaatt taaaaactcATCTAATTTTATTATCTCCTATCTTAATATTAACTCAATTC GAAATAAGTTCTCTGATCTTCAGGTTCTTgtggaaaaaacttttgatgta aTTACCATAGCAGAATCAAAACTCGATGAGTCTTTTCCTAGTTCTGACTA CTAATCTACAGGGCTACCAATTTCCTCCTTTTCGTATAGACTGTACATCA AACAGTGGAGGCCTCTTAACATTTGTGAAAAGTGGCATTCCTACACGTCA CTTGACCAATTTTAAGCTAGACCCTGCTCTACACATTCTTCCTTTAGAAA TAAGACTTAGGAAAGACAAATTATTGGTATTTAATATTTAT Run BLAST on NCBI protein sequence of TCONS_00057503-protein >TCONS_00057503-protein ID=TCONS_00057503-protein|Name=TCONS_00057503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
GNGVSTKSVKSIVRSFPGADSTDMIDYLKPLLNKKKPKYLILHVGTNDIT SGCDTVKNLEKIREMINQITPETELIISNVITRDDKQGIQSEVNGINSVL LSVVQKEIAPKWHWNFTFCSKFERIYIG Run BLAST on NCBI transcript from alignment at scaffold_289:419259..420099 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057503 ID=TCONS_00057503|Name=TCONS_00057503|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at scaffold_289:419259..420099 (Clytia hemisphaerica) ATAAATATTAAATACCAATAATTTGTCTTTCCTAAGTCTTATTTCTAAAG
GAAGAATGTGTAGAGCAGGGTCTAGCTTAAAATTGGTCAAGTGACGTGTA
GGAATGCCACTTTTCACAAATGTTAAGAGGCCTCCACTGTTTGATGTACA
GTCTATACGAAAAGGAGGAAATTGGTAGCCCTGTAGATTAGTAGTCAGAA
CTAGGAAAAGACTCATCGAGTTTTGATTCTGCTATGGTAAttacatcaaa
agttttttccacAAGAACCTGAAGATCAGAGAACTTATTTCGAATTGAGT
TAATATTAAGATAGGAGATAATAAAATTAGATgagtttttaaatttcaaa
ttttgcaaagaTTTCCAACCATTCAAATAACCATTACTAAGCTCGTCCAA
GTCAGGTTCAAGAACATCATCATTCTGGTCATCAATTTCATCTCAACAAT
AACTATCCAATataaattctttcaaattttgagcaaaacGTGAAATTCCA
GTGCCATTTAGGTGCAATTTCTTTTTGGACAACACTAAGAAGAACACTAT
TAATACCATTTACTTCAGATTGAATTCCTTGTTTATCATCGCGAGTAATC
ACATTTGATATGATTAGCTCTGTTTCAGGAGTGATTTGATTGATCATTTC
TCggattttttcaaggtttttaactgTGTCGCACCCAGATGTGATATCGT
TTGTACCTACATGTAATATGAGATACTTTGGCTTCTTTTTATTTAACAAC
GGTTTCAAGTAGTCGATCATATCAGTTGAATCAGCACCTGGAAAACTTCT
TACAATTGATTTGACTGACTTCGTTGAGACACCATTTCCAT Coding sequence (CDS) from alignment at scaffold_289:419259..420099 >TCONS_00057503 ID=TCONS_00057503|Name=TCONS_00057503|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_289:419259..420099 (Clytia hemisphaerica) CTATCCAATataaattctttcaaattttgagcaaaacGTGAAATTCCAGT GCCATTTAGGTGCAATTTCTTTTTGGACAACACTAAGAAGAACACTATTA ATACCATTTACTTCAGATTGAATTCCTTGTTTATCATCGCGAGTAATCAC ATTTGATATGATTAGCTCTGTTTCAGGAGTGATTTGATTGATCATTTCTC ggattttttcaaggtttttaactgTGTCGCACCCAGATGTGATATCGTTT GTACCTACATGTAATATGAGATACTTTGGCTTCTTTTTATTTAACAACGG TTTCAAGTAGTCGATCATATCAGTTGAATCAGCACCTGGAAAACTTCTTA CAATTGATTTGACTGACTTCGTTGAGACACCATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057503-exon-scaffold_289-1491911889:419259..420099 | TCONS_00057503-exon-scaffold_289-1491911889:419259..420099 | Clytia hemisphaerica | exon |
TCONS_00057503-exon-scaffold_289-1510915933:419259..420099 | TCONS_00057503-exon-scaffold_289-1510915933:419259..420099 | Clytia hemisphaerica | exon |
TCONS_00057503-exon-scaffold_289-1575043694:419259..420099 | TCONS_00057503-exon-scaffold_289-1575043694:419259..420099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_289 | supercontig | scaffold_289:419259..420099 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
|