TCONS_00057525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057525
Unique NameTCONS_00057525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057525 ID=TCONS_00057525|Name=TCONS_00057525|organism=Clytia hemisphaerica|type=transcript|length=631bp
NTATTGCAGATTACAAAGACCAGCATCGTAAACGCTGTGGCTTCAGAAAC
GTCAGATGTCGTCTGTGTAATCAAAAAGTCGATCATCAAGAAAAGGAGGG
GCACAAGTTGACGTGTACACATCGTTTGGTTAATTGTATAACATGTGGTG
CCCAGTACAGCTTCATCAACAAAAAGAAACATGAAGACGAAGAATGCAAG
TTACCTTGTGATTATTATCAATATGGTTGCCATGAAAAGGTATGCAAACC
AAATATGGAGCGACACCTTGCCAATTCAGCAAGACGTCATATTGAACTTG
TTAAAGCTCACTATGAAAAACTTATTTCTGTGAAGGATAAGAAGATCACA
GAACTTAACACGACAGTCAACTTACAGAGTGAACACATTGCAGAACTAAC
AACGCAGCTCGAAGTAAATAAAATACCCATGGCAACCAATTCAAGTATTA
GCTCACCAACAGTGAAACCGGCAGTTAAAacgaaatcttttctgaaaacc
cCAATTGGacttttcaaaaagaaagatgACAAGCAACAACAACAAGCAAC
AAATTCCCTTCAAACAACTTCAGCCAAATGGGATGGAAAGAAAATTCATG
AGATAGTGTTCAAGGGTAAAACGCTGACATT
Run BLAST on NCBI

transcript from alignment at scaffold_291:76666..82253-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057525 ID=TCONS_00057525|Name=TCONS_00057525|organism=Clytia hemisphaerica|type=transcript|length=5588bp|location=Sequence derived from alignment at scaffold_291:76666..82253- (Clytia hemisphaerica)
NTATTGCAGATTACAAAGACCAGGTAGGTATTTCATATTTCCTTATTGCT TGCGATTTAGAAAAAACTTTTCTTGGGTTATCAGTAAAATAACGAATGAA AAAATGAGTTAGACATATGTATTTTGTGCATAGCATCGTAAACGCTGTGG CTTCAGAAACGTCAGATGTCGTCTGTGTAATCAAAAAGTCGATCATCAAG AAAAGGAGGGGCACAAGTTGACGTGTACACATCGTTTGGTTAATTGTATA ACATGTGGTGCCCAGTACAGCTTCATCAACAAAAAGGTACTTCTTTTATT TTTCAGTTTTGTTTTTTTTATAAAAACACCCCTGTCTCAGTGACTTAGTG AAAGCCACATGGTCAAGCAGTCGAATTGCCAAAACATTTTTGTTTTTCTC GATAATTACTTAATTAAAAGATATTTCTTCATCTGGATTTGTAACTTTTC AGAAACATGAAGACGAAGAATGCAAGTTACCTTGTGATTATTATCAATAT GGTTGCCATGAAAAGGTGAATCTTCTAATACTCCCAAGTATCTAATAAAA GGGGGGGGGGTCGGGGTTGAAATAAACTGGAGATTTGTAAAAAATATTTA AAATTGATAAGCAGGGCGTAATTACCGGAAGATCGGAAATTGCACTTTAA AAAGTTCCAAAGTAAAGTAATTGTATACTGAAACAGGATACTTAGAGCAG AATTTCTTCTTTTGACAGCTGAAAATATTTCCAAAATCAATAAACAGGGG ACGTTTATTAAGCACCTAAGATTCTTAAGTTGGTTGTGGTATTTAATATT TGCTGATCACTTCGCTGTTGGACTTGCCCGGAGGTCCCATAAATTAATTG CTCTTCGTTCGTTTATTTGTTAGTTTGTTTTTACACATTATCACTGAAAA GGGGAATAATTCAGGAAGCAGGATAAATTTGAAAACGAGTTTAGTTCGGG GCGGAGTAAACAGTGGCGGGGGGGGGTNTTATCACTGAAAAGGGGAATAA ATCAGGAAGCAGGATAAATTTGAAAACGAGTTTAGTTCGGGGCGGAGTAA ACAGTGGCGGATGTGTTTACAGTGTATTGTTGTTCCAAAGCTCTACCGCC ATTATTTTTCCCCTAAACCACACTGACGCCCCGACTCTGCAGATATATTT TCTTGCGTTTACTGAACCTCAAAACGGACAATAGCATCGTCTAGTTTTTA CCCAGAATTTGACGGAGACCGGCTGTTGAAAAAAAATCTTTTCCGGTCTT CCGTTCCTGAAATGTCTCTCAAAGTCTTTAAGGGATTTTCTCAGGATTAT CTTTTTAGCTTTTCCGGATGTTTTGTACATTATTGCGATAGTAATGCCAT AAATGTGTCGAAAACAGTTTTCAGAAAAAAATCTGTTCATAGGAAAAGGT ATTTAATGATAATGCCAAAAGTTTTTAATCGTTTGATTTCCAACGAAATT TTTTTTCAACCCAGAACACCTTAGACTACTGGCATCCACATAGGACTTTT GTTTTTGGTACATGATGTTTTTCTTTTGGTTCAACACAATATTGCGAATT GAGATTATAAGTTTTAGAAAAGCCAACTCATTGAAAAGATTTCTTGAATT CCAAAGTCAATCGAATGATGACAGAAAATCATTTTTTCAGCGTCTTTCTT GAAGGGAAATCTGCACAGATTTGTACATTCTTGGATAAAAAATACTAAGT AAAGCTTTGAATCATAACTTTCTAGTTTAGCATGAATTGACGCTGAGAAA ATGTTCAAAAACTAAAGGGTCCGCATATCTTTGAGAGAGACTTTCACTCC CTTTCTCAAGTTATTAACATTTTTCATGATTTTTTGTACAATGAAGCAAA TTTGTAATTCCCAAAACAATGAAGCCAAATTTCCGTGAAAAATTATTTTT ATCGAGATTTTCCCATTATTCTTTCATGATTTTCTTTGAATTTTAAATTT AATATTTTCTGCTCATTAGCCGGAGAGGTCCATCAAACTACTATGATTAA ACTATCACTTGGTTTGTTTTATTTCCAGGTATGCAAACCAAATATGGAGC GACACCTTGCCAATTCAGCAAGACGTCATATTGAACTTGTTAAAGCTCAC TATGAAAAACTTATTTCTGTGAAGGATAAGAAGATCACAGAACTTAACAC GACAGTCAACTTACAGAGTGAACACATTGCAGAACTAACAACGCAGCTCG AAGTAAATAAAATACCCATGGCAACCAATTCAAGGTAAACAAAGCACTAT ATGTGTTAGCTTTTGTAATTCAGTTTTTCATTTTTTCTGAAACTATTTCT AACTGCCTCGAAAAAAGTTTACTTCTTCATTATTTCAGCTAAAAAATCTC ATATAGGTGACCTTGAGCTTGAGTTATTTGAAATTGCGCTAGCGTATTAA AGTCCTAGTAAATCCATAAATTACTTAGAGCTCTCTTAATTCTAAGATTT CAAACAATTTTATTATGATTACACATGGAACACACCAACTCTTAGACTCT TTCAACTATCTTAGTTCCCCCAGGTCTAGACGAGAGTGATCTAGTATGCC GTAGCAAGATTTACACTCCTATTATATCTCTAAAAGGACCACAAACCGTT AATGGATATCAGCAAACAAGATAATTTCCTAAATTCTCAAATATTCTTGA AAATAGGTGTAAATTTCCTCATTTTTCCCTTAAAACAAGAACAACTTAAG GGCTCTGACCATAGTCAGAAAATTGATTTTAGTATCTGAACATGAAAGTT ATGTTTTAGATTCTTAAACACTTTTAACAAAGAATTGCCTTTATAAATTG CTTTTTAATCAAATCCCTTAAGAGTAATTAAGAACTTAATTGCAAAAATG ACGTTATGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNTTGTTGGTTACATCAGTCAGAAAA CACATTTTAAACACGGCAATTATGAAAAATTCACTATGGTCAGAGCCCTT AAGAATAATCTAAAGCTCGAAGTGCCAAAAAAAAAACACTTACTGAGGCT TCACAAAAATTCACTCAATTTTATAAAAAGAAGACAAATCAATTGATTTT ATGACACCCTCTTCTTCTAGACCTGGTGGAAACTCTTCCCAATGAAAAAA GGCAAAAATATGGTGATTTCCCTGTGGATAATTATAATCCAATGTTTGTC CCTACTGAAAATAATCGATTGAATAAATCCTCACCGCAAAATATTGTCCT ATTTTTCCATCCCTACTGAAATTTTCTTACTTTAAAATAATAGAATTAAC TCCCCAGTCGCAAAGAACATGGGATTAACAAGCCCCAATTTTTTTACCCC ACTGGCTGAAAAAATTCCACCGGTTCTGTGATGGTCGAATGAGTGATATA CAATATTATCAATCCAACTAATTTAGCTGGTGTCAACGACATTCATTTCA AATTATCTCCCATTATCTTAACCTAACTTTTTCATCTATTAGTATTAGCT CACCAACAGTGAAACCGGCAGTTAAAACGAAATCTTTTCTGAAAACCCCA ATTGGACTTTTCAAAAAGAAAGATGACAAGCAACAACAACAAGCAACAAA TTCCCTTCAAACAACTTCGTGAGTATTTAGTTCTTTTAAAGCTTTGGAGA TCATTATTGTTTACTTAAGACCTCGTTCCTTTAGGTAGGAAGAAGCCCCT TAAGTGCTTTTGGTGAAATTTAATGGAAATAATTTTTCATCGAAATAGAA ATACTTTGGCGGAATGAACATAATAGAATTAATTGTTGAAACCCTAAATA TTCTAGAGTGAAGAAATTCGCTGGCAAAACGAAATTCGTCACTTACAGTG TACGGCCCCTAATATGTAGGTTGAATCTAAAATTTTTCTAGAGATCCTAG TAAAAAATATTGGAAAGGCAAGATAGAAAACTTCAAAAATGCAGAAATAG CAATTTTTAGTGGCTGACGTCATTAAACATTTTTTAACAAAAATGTTACT TTGAAATCAGTTCTTGTTAGTGTATTTTCTTGGTGGTGTATTTTGTCAAA ATTCTATGATTATCAACGCTTTACACAATAAGAAGATATCGGACTTTGAA AGAATTTTTTTACCCATTCTCTACACAAAAATGCTAAATTTTGCTGTTTT TGCTCTGATTCAGCAATAGCTTTTGAAAATTATATGAATTTTCTTTACAA AAGTATTAGGTTTCAATTTTCACATTCAGATTTTTCAGACCTTGAAATTC TGATTAAGGGGCCCCGAACATGATGGTTAGCTTCAAGAAGCTGTTTTTTT CATTGGCTGCATTCAAAGATAACTTTGTTTGGGTTTCCTTAGCTATTGGA CATAGCTCTCCTATAATTTCTATGCCCTCTCCCTATTAAATACGGTAATC AGAAGGGTGTTTTACTAAAAATACTGATTTTCAAAAATGTAATGTAGAAA ATTGAAAATTAAATGGTGATAACTTTCAGTATATTTCGGATCCCGAAATC GTTCAAAATATTTTTTTTTTCTTTTTCCGTAAAATTCTCAGACTGGAAGA GTTTTGGATATTTTTGACAGTGGAATTTTCTTCTTTGCCTGTCTTATTTC TTTCTGCAAACTTTATTGTTTAATTTAGAGCCAAATGGGATGGAAAGAAA ATTCATGAGATAGTGTTCAAGGGTAAAACGCTGACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036263XLOC_036263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057525-exon-scaffold_291-1575043694:82231..82253TCONS_00057525-exon-scaffold_291-1575043694:82231..82253Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:81968..82120TCONS_00057525-exon-scaffold_291-1575043694:81968..82120Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:81739..81801TCONS_00057525-exon-scaffold_291-1575043694:81739..81801Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:80020..80225TCONS_00057525-exon-scaffold_291-1575043694:80020..80225Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:77736..77861TCONS_00057525-exon-scaffold_291-1575043694:77736..77861Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1575043694:76666..76725TCONS_00057525-exon-scaffold_291-1575043694:76666..76725Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:82231..82253TCONS_00057525-exon-scaffold_291-1510915933:82231..82253Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:81968..82120TCONS_00057525-exon-scaffold_291-1510915933:81968..82120Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:81739..81801TCONS_00057525-exon-scaffold_291-1510915933:81739..81801Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:80020..80225TCONS_00057525-exon-scaffold_291-1510915933:80020..80225Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:77736..77861TCONS_00057525-exon-scaffold_291-1510915933:77736..77861Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1510915933:76666..76725TCONS_00057525-exon-scaffold_291-1510915933:76666..76725Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:82231..82253TCONS_00057525-exon-scaffold_291-1491911889:82231..82253Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:81968..82120TCONS_00057525-exon-scaffold_291-1491911889:81968..82120Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:81739..81801TCONS_00057525-exon-scaffold_291-1491911889:81739..81801Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:80020..80225TCONS_00057525-exon-scaffold_291-1491911889:80020..80225Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:77736..77861TCONS_00057525-exon-scaffold_291-1491911889:77736..77861Clytia hemisphaericaexon
TCONS_00057525-exon-scaffold_291-1491911889:76666..76725TCONS_00057525-exon-scaffold_291-1491911889:76666..76725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_291supercontigscaffold_291:76666..82253 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (4.55411 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430463 0.245946 0 0.0931275 1.81398 0.896836 0.638453 1.41664 1.34605 0.833369 1.12483 0.824528 2.07906 2.415 0.174382 0.0803517 0 0 4.55411 2.86786 1.41615 0.787687 0 1.19798 0.820014 3.9323 1.80694 1.00689 0.653182 0.475248
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Sequence
Match NameE-valueIdentityDescription
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