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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057541 ID=TCONS_00057541|Name=TCONS_00057541|organism=Clytia hemisphaerica|type=transcript|length=2304bp
AATCCTTGCTTTTTGAAAGCAGACGAAAGCCTTTTGATCAACTGAACTTT
GTTAGATGGTTAGATAAGAACAATTCTCTGTTGGTAGTCACTTTACCATC
TAGTGAGATGGAAACGAAAGCTGATGTTTTCCCCGATCTTCGATCGTGTT
CTTGTCCTTTTGTTGACATTTCATCCTcatttccatcgaaaacaatgaCA
ACAGTAGAAAAAACACTTGAAGTTATTCTTGAGGAAGTTGACATACTCGT
CGATCACCGCTGAATATGTTGTTTTCGGCCACGAGACTTTGNggaatttc
agtcccattcagggtcactttttttgcaaatttcgagtcccacgtagggt
ccatttttcgaacctcagcggagcacccccgtctgtcgacaagggtagta
cccccccccgggattctAGCTGGCAAGCGTTTGCTTGCATGCGTTTGCTT
TGTGATGAAGTGGTTACGAAGGTTTGACTTTTGAGGTTTTCGCATCATTC
CAAGCTTGAATAATGATATAGGTTCGGGGGTNCTTTTGAGGTTTTCGCAT
CATTCCAAGCTTGAATAATGATATAGGTTCGGGGGTTAGGTCAGGACAGA
AATTTTCACCAACATCCTCAGTGAAGTTGCCAAGAGCAATGAGTCGACTA
AACACTATTGTCTCCAATCTTGATTGCTGAAAGCATGTCTTCGAAGGTTT
TTGCTTTCTCCTTCTGTGAATCCTGACCTCCTCGAACACAACGTCGTCTT
GCTTCAACGTCTTCGGCGACATCACAGTTAATCTCTGGCTCAGCGATCAG
TTAACTCGAGAGACTCTTCAATTCAGGCTCTGTCTTGTCGAACGGTTTGT
GGTTGCCAAACCAATCCTTCACGGTAGCGAAATCTGTATCGCCACGCTTC
ATTCTGCTCAGCGAAAGATTGACATGTTGCTCGCTCGTTTTGACATAGCG
TTGTGGATGTCGGCAGATCAATGAATGCTTCCAATCCAAAGTTGACGTGT
TGATGCGGCGATTCCCCTACTACAAGTGAGGCCTCCAGTGCTTTTGATGA
ATTGCATCATTACCTGCTTGATGATCAAATCCGACCATAAACCAGNTTGC
TTTTGATTAATTGCATCATAACCTGCTTGATGATCAAATCCGACCATAAA
CCAGCCCAAAATCTATCGCTTCGTCTCACAGTGTGGTTCGTCTCACAGTG
TGGTAACCATTTGAAAACTGCTTGTAAACCCAAGGGTGAGTTATCTTGAG
CTCGAGTATATTTTGGAGATGTAGCCTGGCGTTCTTAGCGTAGTGGATGT
GAGTGGTTGCTGCAAACAGGTCGATCATCCGAGAAAAGGTAAAGCTTCCA
ATCTCCTTTCTTTCCTGATCTAATGAAATCCTTGACAACTTCCTTGTAAT
CAAGATATTGAAACCATAATTTCGCGGTACGTGAGCATGTTTTCAGATCA
TCTTTGTAATCTTCTAGAAGTTCCAGAAGTTTGGATATCTGCTCATGTCC
AAATCAATGGTGGGATCAACAGAATTGGCAATCACGTTCAGATCGGTTGT
CAGATCTTCGATTTCTACAGCCTCATCATCAGAACCAACAAGTGGTGACA
CCAATTTGCAAACAGGAGCAGATTCAACTAGAAAATGTGCCCTCAGTGCT
CACTAGTGATGTGTGGAACAGTGTTCTTTGCATAAATCTGCTCCATCGAT
TCCTCCAAGCCACTTGCTTTCATTAACGATCATACGCTTTAATCCACAAG
GGTTGATCAAACGTAATCACAGGGGTGTTGATGCCTGAGAATTCCGATTG
agattttacaaacatgagcGTTGAGTAGGCACATGTCATATCATTCGGGT
TTAAGTCGATGATCGGGAGCAGCGATACTGAAGATTGACCATGGTAGGTG
CCAGCGCAGACTTTGCTCATATACCCGGGCAAGCTTGGTTGGAGCATCAG
ATGAAAGTGAAGGACGTGAAATATACTATCATATATGATTCCTTCGGGGA
GAACGTTGAACTTTAATCGTGTAGCATTGTTTTATGGTGTAgatgaaaaa
acgagtcccacctCATGAAGTGTTCTCTTTCCGTCAATTGTGCAAAAGTC
GTGATCGACGTTATCATCGGACCATCGCCCGAACTTACCGACTAGATTCG
CGAAGCTTTTTTAATCCCTGGCCTTCAAAGAACAAAGTTCACAAACTCAA
AACATTGAGAAATCTCATGAAATTTTAAAGCATAATTTAACGATATCTTA
CATTTCTCAATTTCCCGATTATGTGAGCCCGTATTCCCCGAAAACCTATT
TCAT Run BLAST on NCBI protein sequence of TCONS_00057541-protein >TCONS_00057541-protein ID=TCONS_00057541-protein|Name=TCONS_00057541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MSPKTLKQDDVVFEEVRIHRRRKQKPSKTCFQQSRLETIVFSRLIALGNF
TEDVGENFCPDLTPEPISLFKLGMMRKPQKXPRTYIIIQAWNDAKTSKVK
PS Run BLAST on NCBI transcript from alignment at scaffold_291:233430..235733 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057541 ID=TCONS_00057541|Name=TCONS_00057541|organism=Clytia hemisphaerica|type=transcript|length=2304bp|location=Sequence derived from alignment at scaffold_291:233430..235733 (Clytia hemisphaerica)
ATGAAATAGGTTTTCGGGGAATACGGGCTCACATAATCGGGAAATTGAGA
AATGTAAGATATCGTTAAATTATGCTTTAAAATTTCATGAGATTTCTCAA
TGTTTTGAGTTTGTGAACTTTGTTCTTTGAAGGCCAGGGATTAAAAAAGC
TTCGCGAATCTAGTCGGTAAGTTCGGGCGATGGTCCGATGATAACGTCGA
TCACGACTTTTGCACAATTGACGGAAAGAGAACACTTCATGaggtgggac
tcgttttttcatcTACACCATAAAACAATGCTACACGATTAAAGTTCAAC
GTTCTCCCCGAAGGAATCATATATGATAGTATATTTCACGTCCTTCACTT
TCATCTGATGCTCCAACCAAGCTTGCCCGGGTATATGAGCAAAGTCTGCG
CTGGCACCTACCATGGTCAATCTTCAGTATCGCTGCTCCCGATCATCGAC
TTAAACCCGAATGATATGACATGTGCCTACTCAACgctcatgtttgtaaa
atctCAATCGGAATTCTCAGGCATCAACACCCCTGTGATTACGTTTGATC
AACCCTTGTGGATTAAAGCGTATGATCGTTAATGAAAGCAAGTGGCTTGG
AGGAATCGATGGAGCAGATTTATGCAAAGAACACTGTTCCACACATCACT
AGTGAGCACTGAGGGCACATTTTCTAGTTGAATCTGCTCCTGTTTGCAAA
TTGGTGTCACCACTTGTTGGTTCTGATGATGAGGCTGTAGAAATCGAAGA
TCTGACAACCGATCTGAACGTGATTGCCAATTCTGTTGATCCCACCATTG
ATTTGGACATGAGCAGATATCCAAACTTCTGGAACTTCTAGAAGATTACA
AAGATGATCTGAAAACATGCTCACGTACCGCGAAATTATGGTTTCAATAT
CTTGATTACAAGGAAGTTGTCAAGGATTTCATTAGATCAGGAAAGAAAGG
AGATTGGAAGCTTTACCTTTTCTCGGATGATCGACCTGTTTGCAGCAACC
ACTCACATCCACTACGCTAAGAACGCCAGGCTACATCTCCAAAATATACT
CGAGCTCAAGATAACTCACCCTTGGGTTTACAAGCAGTTTTCAAATGGTT
ACCACACTGTGAGACGAACCACACTGTGAGACGAAGCGATAGATTTTGGG
CTGGTTTATGGTCGGATTTGATCATCAAGCAGGTTATGATGCAATTAATC
AAAAGCAANCTGGTTTATGGTCGGATTTGATCATCAAGCAGGTAATGATG
CAATTCATCAAAAGCACTGGAGGCCTCACTTGTAGTAGGGGAATCGCCGC
ATCAACACGTCAACTTTGGATTGGAAGCATTCATTGATCTGCCGACATCC
ACAACGCTATGTCAAAACGAGCGAGCAACATGTCAATCTTTCGCTGAGCA
GAATGAAGCGTGGCGATACAGATTTCGCTACCGTGAAGGATTGGTTTGGC
AACCACAAACCGTTCGACAAGACAGAGCCTGAATTGAAGAGTCTCTCGAG
TTAACTGATCGCTGAGCCAGAGATTAACTGTGATGTCGCCGAAGACGTTG
AAGCAAGACGACGTTGTGTTCGAGGAGGTCAGGATTCACAGAAGGAGAAA
GCAAAAACCTTCGAAGACATGCTTTCAGCAATCAAGATTGGAGACAATAG
TGTTTAGTCGACTCATTGCTCTTGGCAACTTCACTGAGGATGTTGGTGAA
AATTTCTGTCCTGACCTAACCCCCGAACCTATATCATTATTCAAGCTTGG
AATGATGCGAAAACCTCAAAAGNACCCCCGAACCTATATCATTATTCAAG
CTTGGAATGATGCGAAAACCTCAAAAGTCAAACCTTCGTAACCACTTCAT
CACAAAGCAAACGCATGCAAGCAAACGCTTGCCAGCTagaatcccggggg
ggggtactacccttgtcgacagacgggggtgctccgctgaggttcgaaaa
atggaccctacgtgggactcgaaatttgcaaaaaaagtgaccctgaatgg
gactgaaattccNCAAAGTCTCGTGGCCGAAAACAACATATTCAGCGGTG
ATCGACGAGTATGTCAACTTCCTCAAGAATAACTTCAAGTGTTTTTTCTA
CTGTTGtcattgttttcgatggaaatgAGGATGAAATGTCAACAAAAGGA
CAAGAACACGATCGAAGATCGGGGAAAACATCAGCTTTCGTTTCCATCTC
ACTAGATGGTAAAGTGACTACCAACAGAGAATTGTTCTTATCTAACCATC
TAACAAAGTTCAGTTGATCAAAAGGCTTTCGTCTGCTTTCAAAAAGCAAG
GATT Coding sequence (CDS) from alignment at scaffold_291:233430..235733 >TCONS_00057541 ID=TCONS_00057541|Name=TCONS_00057541|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_291:233430..235733 (Clytia hemisphaerica)
ATGTCGCCGAAGACGTTGAAGCAAGACGACGTTGTGTTCGAGGAGGTCAG
GATTCACAGAAGGAGAAAGCAAAAACCTTCGAAGACATGCTTTCAGCAAT
CAAGATTGGAGACAATAGTGTTTAGTCGACTCATTGCTCTTGGCAACTTC
ACTGAGGATGTTGGTGAAAATTTCTGTCCTGACCTAACCCCCGAACCTAT
ATCATTATTCAAGCTTGGAATGATGCGAAAACCTCAAAAGNACCCCCGAA
CCTATATCATTATTCAAGCTTGGAATGATGCGAAAACCTCAAAAGTCAAA
CCTTCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057541-exon-scaffold_291-1491911889:233430..235733 | TCONS_00057541-exon-scaffold_291-1491911889:233430..235733 | Clytia hemisphaerica | exon |
| TCONS_00057541-exon-scaffold_291-1510915933:233430..235733 | TCONS_00057541-exon-scaffold_291-1510915933:233430..235733 | Clytia hemisphaerica | exon |
| TCONS_00057541-exon-scaffold_291-1575043694:233430..235733 | TCONS_00057541-exon-scaffold_291-1575043694:233430..235733 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:233430..235733 . |
Blast
The following BLAST results are available for this feature:
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