TCONS_00057572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057572
Unique NameTCONS_00057572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057572 ID=TCONS_00057572|Name=TCONS_00057572|organism=Clytia hemisphaerica|type=transcript|length=2134bp
CCAACCTCGCAAAACAAGATAGCGAACCAAAGCAAGCCGATAGCTCCACG
CCACGAAAGAAACAAGCACCTCATCAGTGGAATGACGATCACCACCCAAC
AGGAAGAGGACCTTTATACTCAGAATCATCGAATAGTATTTCATCGAGGA
ACGGCTCCTTAAAATCCATCACTTCAATCGGCTCAAGAAGTCTTCCACCT
TCCTACCAAGAATTTCGATCTGAATCACCTCTTAATTATGACGATGATGA
TCACCATGGACAAGTATCGATGGTATAGCGACCTAGCAACCAATCACAAT
CACGTGGTTATCACGTGGTCTGGTAATTTTATAATTCGTGACGtcacgat
gacgtcattttgtagCGCATGATGTAATGATAAGACTTATTGTAAGTGGA
CAAATTTTTATtagtatttttattattattaaaaaccAGAACTCTAGAGA
AACAGTTTTAGAGAGAATTTTACCGTTGATTAGCCTGCCTGTCCAGAATT
GATAATGCCTTTGACGATGCATCGTCAAAGATGAATGCTTTCCACTCTTT
TTATCTACTGAATAAAGTCGAACCAATAAGGGTGTCTTTCAGAATCTgcg
taaaggccggtctccactttcgcacgaaatgggcgacagttttttttaac
cttttttgcctgaagaaaagattacgtcataaaaaagttttcgctcatgt
cacgcgaaagtggagaccggcctttaaaagCGTTGGATGAACTTTAGGCT
GTCCAAATCGTcaaaaaaactttccaaaagaACTAGGTACAAGGCTGGAC
CTAAATTCATTCTAACATTGTGACAAACTATAGAAATTTGACCCTTGAAG
AATTTTTGGTCCTTGATAGTTATCGCCATAAGTTAATTCAAAGCCGGTCA
TCCATAGTCACCTCTATTGAAGATatagttgactctcgctaattcgaact
cgtaCGGTGAATCCagttttttcgaattacagagagattcgagtTGAAGA
AAGACTTTCTAACGGGGACTATAAACGAGTCCAAATTATAGAAAGGTTCG
AATAAGGGAGAGTTTACTGCAGAATTTAGTAGAttgattaatattttttt
agtgGGACCTGTTATTATctttagatattttttctttaatttgtaCATAA
ATAACTCAATTGCTTATAAACACTGTTTTATTGCCCCAATTTCGTCGAAT
TGTAAGATTTTGTTggaatcactgacctttatatatccctggaccatgTT
ACTCAATCCCGGctaaccaaaaatttttgatcggagtttttttgaaattg
gtaccctaatagcggcactactcaatagtggtgaaaatgcatcgagagcg
ctaggtctacttttcctcaaatacttttgatgatgtagcgccgttagacg
ttaatttttaacattgcaatggcttcttctcgggtaccaattccaaaaaa
actccgatcgaAAAgagcggatatagcttggtccagggatatataaaggt
cagtggttggaATGAGCTAATCAGTCTCCTTCATTTGATACATGCTCGTG
GTTCCTTTTTTGTTCGCTTATTTTCGGTTCTTTACGGAAcagataaaatt
aattttctttcgGTCATTGAACaaatgacagttttttatcaaattcttag
tgaattttatctcattttgagccttcactGGGGACACTTTAACGGTCGTT
TCGCCGGGCCTGAAGTTGGAATTATTCAAAAATAGAGATGCTACTTTTTT
CACGCACGATTGAGGAATTTTCATGCCAAAGGTTCCTTGGgattattttt
ttagaatttataaTTTTCACAACTAAAATTTCGTCACATTCTTGTCTATT
ctttagaataatttttaatGTAAGAGTTTTTCCTCATTTGTTTTTCCCTC
ATCTTACGGACCTTTTATTTTCAACATACGTTTGATATTATTGCTGACTC
AGCAAGAAGATTTTATTGCTGATTGCAGTGGCAAGTCCTactttaattat
atttttgtacagAACCAAAAACGAATATAATacatacttttttgaaaaaa
ataaatacatttatgtgtcttttcaattttttaatccCTCCACCGGGGGG
AGAGTGGGTCAACCAACTGACGGTAAGTgcggag
Run BLAST on NCBI

transcript from alignment at scaffold_293:103203..107719-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057572 ID=TCONS_00057572|Name=TCONS_00057572|organism=Clytia hemisphaerica|type=transcript|length=4517bp|location=Sequence derived from alignment at scaffold_293:103203..107719- (Clytia hemisphaerica)
CCAACCTCGCAAAACAAGGTATTTAATTTCTTTCATTCTATTGAATATGG
AGTAGTTTGCTTTCAGATATACTTTATGACTCAAAACAATAAGCAGATAT
TCAATGGGTAAAAGTTGGTTATTGAGATTTATTAACCCGAGGTGATGTAA
TATTCAACGAGGCGAAACCGAGTTGAATATATATCACCGAGGGTTAATAA
ATCCAATAACCAACGAAAACCTATTGAATATATGTTTTATTATATACCTA
GAGGCAAAAACGAAACATTATATANNNNNNNNNNNNTATACATCACCGAG
GGTTAATAAATCCAATAACCAACGAAAACCTATTGAATATATGTTTTATT
ATATACCTAGAGGCAAAAACGAAACATTATATATGTCAATTGTTAAACGT
TTCACTTTAAAACACTCCCATATAATCGAACGTTCGAATGTTTTTATTTT
TTAATAATTTTCTTAATTACTTTGAGTCATAAAATGTGTTCATGAAATTG
ACAATAGATTTATTTTAATGCAGGGTTGCCTAAAAAATCCTATTTTCTCC
TAAATTTTGAAAAGTCTCCTAAAATCTCCTAAAATCTCCTTAGGAAATTG
AAATTTTGAATACTTTCTCCTAAAATCTCCTAAAAAATATTTTACCAAGT
TTTCAAAAATTCAATTTAGTACTCTGATTATCAAATTTTTATTGCTAAAT
GATCCTATTCATGGCATACATGATTATTAACAAAAGCATTTCACTCTGTA
TGCTTAAAGGTCTTTAAAAACATTGGAAGTTATGAAAATTTTGTAGAATT
TTCTCCTCAAAAATTCAAAAATTCTTTTAAAAAGTGTGAAAATCTTCTCA
AAACTCCTAAATTTTTTCCCCGTAATTTTCAGATTCACCTAAAAAAATAG
ATGAAAATCACCTAAAATCTACTAAATTCTCTTAAATTTTGATCAAAACA
AAATAGTGGCAACCCTGTAATGAATTTCTTTGATATAACAACAAAAACGA
CAAAGAAATCAAACTTTGAGAGCAAAATTTGAAAAAAAAGTTCTACCGTG
GTATAATAGCCATGGTATATCAGGAATTATTCAGTGGCTGTTTTTGCCTA
CAGGTATATAATAATAACTAATACATGAGAGTCTCTTTAACTCGAACCTC
TATAACTCGAATGTCTCCTTAACTCAAACAAGTTTTCTAGTCCCTTCAAT
TAGCAATGCCTCATACCTTACTTCATAACACTAAATATCCTCAACTCAAA
CAAATTTGTGTTCCCTGTGCATGTTCGAGTTTATAGAGACTTTACTGTAA
TCCAGTTGCTTATTTTCTCTCTTCAACAACAGTTATACGTTAAAACCGTT
TTACTTTTTCAATTTGCAGATAGCGAACCAAAGCAAGCCGATAGCTCCAC
GCCACGAAAGAAACAAGCACCTCATCAGTGGAATGGTAAAGTATTATTAT
CAATTTGATATAGTGTTTTTAAATGCCAGCGCTTTTATTTTTACTGGTTG
TTTCTAAGACTTGAGCGGTTTCACTAATCAGCTGACCATAGCTATTGGTA
AATGAGTCGAGTAATAAATTTAGATGGAACGATACTAGATGTTTCCCATT
ATTGTCAGGATTGACGAGTTGACCCACATCTCAATATATTATCTATAGTA
TCTACCTAGGACAATTAGATACTACGATTCTGGAACTGGTATAGCCCACC
ACTAAGTTTTTTCTTACACGTCATCCTAATAACAAATCCTTTCCCTCTTC
AGACGATCACCACCCAACAGGAAGAGGACCTTTATACTCAGGTAAGGATC
GAGTTTCCTTTCCTTGAAAGAAAATTTTTCTATACCTGAAGGCTTAAACA
GCCATTGAATAATCCCGTGATATACCGCTATGGTCAAAACTTTTTTCAGA
TTTTATTTCGAAGTCAATTTTATTTTATAGATATTATTTTTCTGATCAAA
GAATACTGTACTTTCTTTGCGCTCTCTGATATACATGAGACTGGTACAGA
GCACTCTAGCCCATGTTCTTTACTCGTGATAAGCATCACTGCAGTGTCTT
CGATGTAATGTTAGAAGACATTGCAATGGTGTATATCATAAATTCATAAT
TTTAATCGTTCCATAACCCACCTTCGATCTTTCTTCAATGTTTTTTTTTT
CTCTCATAGAATCATCGAATAGTATTTCATCGAGGAACGGCTCCTTAAAA
TCCATCACTTCAATCGGCTCAAGAAGTCTTCCACCTTCCTACCAAGAATT
TCGATCTGAATCACCTCTTAATTATGACGATGGTAAGTGAATATACTTGG
TGCTCAACTCCGCGTGAATGCGAAGATCTGATTTGGTTGTTCAGCCCATA
CAATCAAAACAGTGTTGCTTTGTTGAAATCGACTGGGTTCTAATGTTTAT
GTTAATCTTTATGATTGGCTTTTGTTTTGGCACGATTGTTTGCTTTAGCC
AATTAAATATTCATCCCAAATTTGAATGAAAAAGATAAAAGCGATGCGCC
ATTTAGGTACAGATTCTCTTACGGAGCCACGGCTTTTAGAGCGAATAAAT
GCCATGCGCGGAGTATGGAAATCTGCTTTGAAATTGTATACTATACTATA
GATTATATAAACTTGTGTTTCGCTTCTAGATGATCACCATGGACAAGTAT
CGATGGTATAGCGACCTAGCAACCAATCACAATCACGTGGTTATCACGTG
GTCTGGTAATTTTATAATTCGTGACGTCACGATGACGTCATTTTGTAGCG
CATGATGTAATGATAAGACTTATTGTAAGTGGACAAATTTTTATTAGTAT
TTTTATTATTATTAAAAACCAGAACTCTAGAGAAACAGTTTTAGAGAGAA
TTTTACCGTTGATTAGCCTGCCTGTCCAGAATTGATAATGCCTTTGACGA
TGCATCGTCAAAGATGAATGCTTTCCACTCTTTTTATCTACTGAATAAAG
TCGAACCAATAAGGGTGTCTTTCAGAATCTGCGTAAAGGCCGGTCTCCAC
TTTCGCACGAAATGGGCGACAGTTTTTTTTAACCTTTTTTGCCTGAAGAA
AAGATTACGTCATAAAAAAGTTTTCGCTCATGTCACGCGAAAGTGGAGAC
CGGCCTTTAAAAGCGTTGGATGAACTTTAGGCTGTCCAAATCGTCAAAAA
AACTTTCCAAAAGAACTAGGTACAAGGCTGGACCTAAATTCATTCTAACA
TTGTGACAAACTATAGAAATTTGACCCTTGAAGAATTTTTGGTCCTTGAT
AGTTATCGCCATAAGTTAATTCAAAGCCGGTCATCCATAGTCACCTCTAT
TGAAGATATAGTTGACTCTCGCTAATTCGAACTCGTACGGTGAATCCAGT
TTTTTCGAATTACAGAGAGATTCGAGTTGAAGAAAGACTTTCTAACGGGG
ACTATAAACGAGTCCAAATTATAGAAAGGTTCGAATAAGGGAGAGTTTAC
TGCAGAATTTAGTAGATTGATTAATATTTTTTTAGTGGGACCTGTTATTA
TCTTTAGATATTTTTTCTTTAATTTGTACATAAATAACTCAATTGCTTAT
AAACACTGTTTTATTGCCCCAATTTCGTCGAATTGTAAGATTTTGTTGGA
ATCACTGACCTTTATATATCCCTGGACCATGTTACTCAATCCCGGCTAAC
CAAAAATTTTTGATCGGAGTTTTTTTGAAATTGGTACCCTAATAGCGGCA
CTACTCAATAGTGGTGAAAATGCATCGAGAGCGCTAGGTCTACTTTTCCT
CAAATACTTTTGATGATGTAGCGCCGTTAGACGTTAATTTTTAACATTGC
AATGGCTTCTTCTCGGGTACCAATTCCAAAAAAACTCCGATCGAAAAGAG
CGGATATAGCTTGGTCCAGGGATATATAAAGGTCAGTGGTTGGAATGAGC
TAATCAGTCTCCTTCATTTGATACATGCTCGTGGTTCCTTTTTTGTTCGC
TTATTTTCGGTTCTTTACGGAACAGATAAAATTAATTTTCTTTCGGTCAT
TGAACAAATGACAGTTTTTTATCAAATTCTTAGTGAATTTTATCTCATTT
TGAGCCTTCACTGGGGACACTTTAACGGTCGTTTCGCCGGGCCTGAAGTT
GGAATTATTCAAAAATAGAGATGCTACTTTTTTCACGCACGATTGAGGAA
TTTTCATGCCAAAGGTTCCTTGGGATTATTTTTTTAGAATTTATAATTTT
CACAACTAAAATTTCGTCACATTCTTGTCTATTCTTTAGAATAATTTTTA
ATGTAAGAGTTTTTCCTCATTTGTTTTTCCCTCATCTTACGGACCTTTTA
TTTTCAACATACGTTTGATATTATTGCTGACTCAGCAAGAAGATTTTATT
GCTGATTGCAGTGGCAAGTCCTACTTTAATTATATTTTTGTACAGAACCA
AAAACGAATATAATACATACTTTTTTGAAAAAAATAAATACATTTATGTG
TCTTTTCAATTTTTTAATCCCTCCACCGGGGGGAGAGTGGGTCAACCAAC
TGACGGTAAGTGCGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036304XLOC_036304Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057572-exon-scaffold_293-1575043694:107702..107719TCONS_00057572-exon-scaffold_293-1575043694:107702..107719Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1575043694:106285..106350TCONS_00057572-exon-scaffold_293-1575043694:106285..106350Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1575043694:105929..105967TCONS_00057572-exon-scaffold_293-1575043694:105929..105967Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1575043694:105438..105560TCONS_00057572-exon-scaffold_293-1575043694:105438..105560Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1575043694:103203..105090TCONS_00057572-exon-scaffold_293-1575043694:103203..105090Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1510915933:107702..107719TCONS_00057572-exon-scaffold_293-1510915933:107702..107719Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1510915933:106285..106350TCONS_00057572-exon-scaffold_293-1510915933:106285..106350Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1510915933:105929..105967TCONS_00057572-exon-scaffold_293-1510915933:105929..105967Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1510915933:105438..105560TCONS_00057572-exon-scaffold_293-1510915933:105438..105560Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1510915933:103203..105090TCONS_00057572-exon-scaffold_293-1510915933:103203..105090Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1491911889:107702..107719TCONS_00057572-exon-scaffold_293-1491911889:107702..107719Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1491911889:106285..106350TCONS_00057572-exon-scaffold_293-1491911889:106285..106350Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1491911889:105929..105967TCONS_00057572-exon-scaffold_293-1491911889:105929..105967Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1491911889:105438..105560TCONS_00057572-exon-scaffold_293-1491911889:105438..105560Clytia hemisphaericaexon
TCONS_00057572-exon-scaffold_293-1491911889:103203..105090TCONS_00057572-exon-scaffold_293-1491911889:103203..105090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:103203..107719 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191302	0.0612143	0.0486322	0	0.0499542	0.108585	0	0	0.893032	1.02503	0.321019	0.674881	0.754119	0.355039	0.338986	0.378295	0.349875	0.628165	0.392783	0.611399	0.619821	0.436843	0.193089	0.36767	0.100283	0.0638435	0.155274	0.602057	0.535439	0.424691
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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