TCONS_00057582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057582
Unique NameTCONS_00057582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057582 ID=TCONS_00057582|Name=TCONS_00057582|organism=Clytia hemisphaerica|type=transcript|length=482bp
TTTGGATttacatgaaaatttcaatgttcTCAATACTGAACTGACCCAAG
ACAGGATAAAGACAAACTAAGTTGATCAAAATGCTTGTGACTGATGGGAG
TCTCTAGATGCAAGTTATAGATGATGGAGGAAATTAAGCCTCCAAAGAGG
ATGTTGTTTTCTGCAAATAAGCCTCACGCCAAACGTCTCAAACACGTGAA
TACCACTTCTGAGAATGAACAGAAAAAAAGGCAAATTGAAAGGCGACAAA
GTTTTGATCCAGCCCCAAATATTTTCACAAGGCTTGGAAGTCTAAGGTCA
TCCAGGAGACCTGTTGTCGTTGCATCTGCCTTCCCTAGAATGAATATGAC
GCGGCTACCCTGGAAAACAAGGATCATTCGAACCATCTATCCAGTGTTTT
TCcacttcaaaatgaaatttctcaaaacatTCCGTTTACGTTCAGTTCGG
ACCAATGTGTTTGTACCTTATCAACCACCTGC
Run BLAST on NCBI

protein sequence of TCONS_00057582-protein

>TCONS_00057582-protein ID=TCONS_00057582-protein|Name=TCONS_00057582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MMEEIKPPKRMLFSANKPHAKRLKHVNTTSENEQKKRQIERRQSFDPAPN
IFTRLGSLRSSRRPVVVASAFPRMNMTRLPWKTRIIRTIYPVFFHFKMKF
LKTFRLRSVRTNVFVPYQPP
Run BLAST on NCBI

transcript from alignment at scaffold_293:124599..125080

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057582 ID=TCONS_00057582|Name=TCONS_00057582|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at scaffold_293:124599..125080 (Clytia hemisphaerica)
GCAGGTGGTTGATAAGGTACAAACACATTGGTCCGAACTGAACGTAAACG
GAatgttttgagaaatttcattttgaagtgGAAAAACACTGGATAGATGG
TTCGAATGATCCTTGTTTTCCAGGGTAGCCGCGTCATATTCATTCTAGGG
AAGGCAGATGCAACGACAACAGGTCTCCTGGATGACCTTAGACTTCCAAG
CCTTGTGAAAATATTTGGGGCTGGATCAAAACTTTGTCGCCTTTCAATTT
GCCTTTTTTTCTGTTCATTCTCAGAAGTGGTATTCACGTGTTTGAGACGT
TTGGCGTGAGGCTTATTTGCAGAAAACAACATCCTCTTTGGAGGCTTAAT
TTCCTCCATCATCTATAACTTGCATCTAGAGACTCCCATCAGTCACAAGC
ATTTTGATCAACTTAGTTTGTCTTTATCCTGTCTTGGGTCAGTTCAGTAT
TGAgaacattgaaattttcatgtaaATCCAAA

Coding sequence (CDS) from alignment at scaffold_293:124599..125080

>TCONS_00057582 ID=TCONS_00057582|Name=TCONS_00057582|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_293:124599..125080 (Clytia hemisphaerica)
AGGTGGTTGATAAGGTACAAACACATTGGTCCGAACTGAACGTAAACGGA
atgttttgagaaatttcattttgaagtgGAAAAACACTGGATAGATGGTT
CGAATGATCCTTGTTTTCCAGGGTAGCCGCGTCATATTCATTCTAGGGAA
GGCAGATGCAACGACAACAGGTCTCCTGGATGACCTTAGACTTCCAAGCC
TTGTGAAAATATTTGGGGCTGGATCAAAACTTTGTCGCCTTTCAATTTGC
CTTTTTTTCTGTTCATTCTCAGAAGTGGTATTCACGTGTTTGAGACGTTT
GGCGTGAGGCTTATTTGCAGAAAACAACATCCTCTTTGGAGGCTTAATTT
CCTCCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036308XLOC_036308Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057582-proteinTCONS_00057582-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057582-exon-scaffold_293-1491911889:124599..125080TCONS_00057582-exon-scaffold_293-1491911889:124599..125080Clytia hemisphaericaexon
TCONS_00057582-exon-scaffold_293-1510915933:124599..125080TCONS_00057582-exon-scaffold_293-1510915933:124599..125080Clytia hemisphaericaexon
TCONS_00057582-exon-scaffold_293-1575043694:124599..125080TCONS_00057582-exon-scaffold_293-1575043694:124599..125080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:124599..125080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25991	0.126727	1.7657	1.87142	0.175252	0.138486	0.167078	0.469249	0.109511	0.271293	0	0	0.259287	0.0897574	0.0737928	0.237573	1.65847	2.49981	0.138145	0.722795	2.51296	2.94176	0.298008	0.948264	4.88345	2.24144	0	0.190174	0	0.440873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top