TCONS_00057604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057604
Unique NameTCONS_00057604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057604 ID=TCONS_00057604|Name=TCONS_00057604|organism=Clytia hemisphaerica|type=transcript|length=265bp
TCGGATTTGGTACTAATGGGAATAATCCAAGAGTATGTTCGAAAAGAAGT
CGAGAGATACATATCAAGTATGCCAGGAACGAGCCAGAATGCTACGGaaa
ggaagaaaaagaaaaaacaatcaaagCAAATTCCAAAAGATCAGCCACCA
GAGCTTCCACCTCGAAGTCTGAAATCCAGAAGAGGCAACAGGCGAAAACA
GGAAGAAAATTCAGCAAACCATGTTTCGGCAGTAAAGCACATCATCAATG
GAAGCACAAATGACG
Run BLAST on NCBI

transcript from alignment at scaffold_293:260341..260605

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057604 ID=TCONS_00057604|Name=TCONS_00057604|organism=Clytia hemisphaerica|type=transcript|length=265bp|location=Sequence derived from alignment at scaffold_293:260341..260605 (Clytia hemisphaerica)
CGTCATTTGTGCTTCCATTGATGATGTGCTTTACTGCCGAAACATGGTTT
GCTGAATTTTCTTCCTGTTTTCGCCTGTTGCCTCTTCTGGATTTCAGACT
TCGAGGTGGAAGCTCTGGTGGCTGATCTTTTGGAATTTGctttgattgtt
ttttctttttcttcctttCCGTAGCATTCTGGCTCGTTCCTGGCATACTT
GATATGTATCTCTCGACTTCTTTTCGAACATACTCTTGGATTATTCCCAT
TAGTACCAAATCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036330XLOC_036330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057604-exon-scaffold_293-1491911889:260341..260605TCONS_00057604-exon-scaffold_293-1491911889:260341..260605Clytia hemisphaericaexon
TCONS_00057604-exon-scaffold_293-1510915933:260341..260605TCONS_00057604-exon-scaffold_293-1510915933:260341..260605Clytia hemisphaericaexon
TCONS_00057604-exon-scaffold_293-1575043694:260341..260605TCONS_00057604-exon-scaffold_293-1575043694:260341..260605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_293supercontigscaffold_293:260341..260605 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.609232	0	2.06941	4.72406	0	2.59691	5.48285	6.59954	1.54017	0	3.08617	1.21724	9.31917	6.31177	6.5729	14.1075	4.11614	8.90658	0	2.71078	2.9452	6.89552	6.2868	0.635069	4.57874	6.42151	0	0.891539	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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