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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057627 ID=TCONS_00057627|Name=TCONS_00057627|organism=Clytia hemisphaerica|type=transcript|length=1542bp
CAAAAGATAAACCCAATATAAAGTTGATGTGTTTAAGAATGAGGAGGAAG
CCAAAAGTCTGAAATGTGTGTATTTGacaaaatattaacagaaaATTTGA
ATACAAACAGATACAAATATTATATAAATACAATTAATACAAtacagaaa
atatttaaaaataagcaataagaaaaactaaactctcaaaaaggtgtgca
gtgttcttacttttgaaaataacaaaTTGAATTTCGCGTAGAATAAGGCT
ATAATTACCATTTAAACATTTAACAAGAGTGAAACTTAAAATCTTGCTTT
TTAGGGTTCAGACCTTGTTCTTCTAAGTGGTGAGTTTTTATGTGATAGTT
CCTTCCATTACTATAGGCAAAAGTTTTGTCACAAAATCTGCATTTGTATG
GTTTTACTTTCTGATGGGTGTACGCATGGTTTTTTAAAGTAGATTGTGAA
CGAAGAATTTTTCCACACTCTTTACACTGAAATGTCTTACCATGCCTTTG
AAAATGTATCTTGAATACGTTCTTGTCTTTGTATTTCTTTCCACAAATTT
TACATTCATACAAAACACTTTCATGTGCTTCAATAATGTGTTGTTCGAGT
TCCTTTTTTAGTAAGAAAGATTCCGCACAAAGAAGGCATGGAAAGGCTTT
TGATACTTCGTTAGAATTAGATGATACTCTGCTTGTTGTTTCAGTATTTT
GGTACATGGGGATAGAAGGAGTATTGAACAGATTATGCTTGAATTTCTGG
TAATTCCTGTCAATCACAAGTTTTGTTGGAGGAGCTGTGTCCATCTTTAA
AGGATTTCCAGTTTGATTGACAATTGCATCATTTGAAGGTTGGTGATCAG
AAACGTTGTCTTTGTATCTTTGGTCATCTTGGGGGATGATCAAATTTCTT
GTTTCACTTGAAGAAGATTCTTGAATTAGGTTTGCACTTCTCTGAATTAA
TTCTGTAGTGTTTGGAGCACATTGGTTGTTGTCTTGTGTATTAAAAAAAT
CTTCTACCTTGATTTTAATTAATTCTAATTCCTCTGAATTTGAAGTTTCT
TCCCTTGGAGTAACTGCAACTGTTATTTCATTATCTGTTAGGCCATTACC
TGTATGTTCTACAGAATCAAATATTTCTTCGACTTTTATTTCCAAACAAA
AATTGTTGGTATTGGAAGCTTGCATGGTATCCATAGTAATGTTTCCTGCA
CTAGTTATTATATTTAACAAAAATAGATTTGTTCTTGACATTGATTTTTG
GGATAACTAACTCTTAGAAAGAGGTTAACTAGATGGGATTCAACAAGCTA
CCTTAAGGGTAATTTTCGTGGTGACTAATTTTCGCAAGACAGCTTCCCTT
GCAAAATgatttaatttttgcgggacTTATTTTTGCGACAAAATTTGACT
GTAAACTTTTGCGAGGATCATATTTCGCGAATTGgtgaattttttcagat
tttcacatttttcgttAGTTTGATTACAAGATTTTGAGTccacagtagag
tctccataactcgaactcgTTTCTTACgaggaatgaaaattt Run BLAST on NCBI protein sequence of TCONS_00057627-protein >TCONS_00057627-protein ID=TCONS_00057627-protein|Name=TCONS_00057627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MSRTNLFLLNIITSAGNITMDTMQASNTNNFCLEIKVEEIFDSVEHTGNG
LTDNEITVAVTPREETSNSEELELIKIKVEDFFNTQDNNQCAPNTTELIQ
RSANLIQESSSSETRNLIIPQDDQRYKDNVSDHQPSNDAIVNQTGNPLKM
DTAPPTKLVIDRNYQKFKHNLFNTPSIPMYQNTETTSRVSSNSNEVSKAF
PCLLCAESFLLKKELEQHIIEAHESVLYECKICGKKYKDKNVFKIHFQRH
GKTFQCKECGKILRSQSTLKNHAYTHQKVKPYKCRFCDKTFAYSNGRNYH
IKTHHLEEQGLNPKKQDFKFHSC Run BLAST on NCBI transcript from alignment at scaffold_294:132164..133705 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057627 ID=TCONS_00057627|Name=TCONS_00057627|organism=Clytia hemisphaerica|type=transcript|length=1542bp|location=Sequence derived from alignment at scaffold_294:132164..133705 (Clytia hemisphaerica)
aaattttcattcctcGTAAGAAAcgagttcgagttatggagactctactg
tggACTCAAAATCTTGTAATCAAACTaacgaaaaatgtgaaaatctgaaa
aaattcacCAATTCGCGAAATATGATCCTCGCAAAAGTTTACAGTCAAAT
TTTGTCGCAAAAATAAgtcccgcaaaaattaaatcATTTTGCAAGGGAAG
CTGTCTTGCGAAAATTAGTCACCACGAAAATTACCCTTAAGGTAGCTTGT
TGAATCCCATCTAGTTAACCTCTTTCTAAGAGTTAGTTATCCCAAAAATC
AATGTCAAGAACAAATCTATTTTTGTTAAATATAATAACTAGTGCAGGAA
ACATTACTATGGATACCATGCAAGCTTCCAATACCAACAATTTTTGTTTG
GAAATAAAAGTCGAAGAAATATTTGATTCTGTAGAACATACAGGTAATGG
CCTAACAGATAATGAAATAACAGTTGCAGTTACTCCAAGGGAAGAAACTT
CAAATTCAGAGGAATTAGAATTAATTAAAATCAAGGTAGAAGATTTTTTT
AATACACAAGACAACAACCAATGTGCTCCAAACACTACAGAATTAATTCA
GAGAAGTGCAAACCTAATTCAAGAATCTTCTTCAAGTGAAACAAGAAATT
TGATCATCCCCCAAGATGACCAAAGATACAAAGACAACGTTTCTGATCAC
CAACCTTCAAATGATGCAATTGTCAATCAAACTGGAAATCCTTTAAAGAT
GGACACAGCTCCTCCAACAAAACTTGTGATTGACAGGAATTACCAGAAAT
TCAAGCATAATCTGTTCAATACTCCTTCTATCCCCATGTACCAAAATACT
GAAACAACAAGCAGAGTATCATCTAATTCTAACGAAGTATCAAAAGCCTT
TCCATGCCTTCTTTGTGCGGAATCTTTCTTACTAAAAAAGGAACTCGAAC
AACACATTATTGAAGCACATGAAAGTGTTTTGTATGAATGTAAAATTTGT
GGAAAGAAATACAAAGACAAGAACGTATTCAAGATACATTTTCAAAGGCA
TGGTAAGACATTTCAGTGTAAAGAGTGTGGAAAAATTCTTCGTTCACAAT
CTACTTTAAAAAACCATGCGTACACCCATCAGAAAGTAAAACCATACAAA
TGCAGATTTTGTGACAAAACTTTTGCCTATAGTAATGGAAGGAACTATCA
CATAAAAACTCACCACTTAGAAGAACAAGGTCTGAACCCTAAAAAGCAAG
ATTTTAAGTTTCACTCTTGTTAAATGTTTAAATGGTAATTATAGCCTTAT
TCTACGCGAAATTCAAtttgttattttcaaaagtaagaacactgcacacc
tttttgagagtttagtttttcttattgcttatttttaaatattttctgta
TTGTATTAATTGTATTTATATAATATTTGTATCTGTTTGTATTCAAATtt
tctgttaatattttgtCAAATACACACATTTCAGACTTTTGGCTTCCTCC
TCATTCTTAAACACATCAACTTTATATTGGGTTTATCTTTTG Coding sequence (CDS) from alignment at scaffold_294:132164..133705 >TCONS_00057627 ID=TCONS_00057627|Name=TCONS_00057627|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_294:132164..133705 (Clytia hemisphaerica)
ATGTCAAGAACAAATCTATTTTTGTTAAATATAATAACTAGTGCAGGAAA
CATTACTATGGATACCATGCAAGCTTCCAATACCAACAATTTTTGTTTGG
AAATAAAAGTCGAAGAAATATTTGATTCTGTAGAACATACAGGTAATGGC
CTAACAGATAATGAAATAACAGTTGCAGTTACTCCAAGGGAAGAAACTTC
AAATTCAGAGGAATTAGAATTAATTAAAATCAAGGTAGAAGATTTTTTTA
ATACACAAGACAACAACCAATGTGCTCCAAACACTACAGAATTAATTCAG
AGAAGTGCAAACCTAATTCAAGAATCTTCTTCAAGTGAAACAAGAAATTT
GATCATCCCCCAAGATGACCAAAGATACAAAGACAACGTTTCTGATCACC
AACCTTCAAATGATGCAATTGTCAATCAAACTGGAAATCCTTTAAAGATG
GACACAGCTCCTCCAACAAAACTTGTGATTGACAGGAATTACCAGAAATT
CAAGCATAATCTGTTCAATACTCCTTCTATCCCCATGTACCAAAATACTG
AAACAACAAGCAGAGTATCATCTAATTCTAACGAAGTATCAAAAGCCTTT
CCATGCCTTCTTTGTGCGGAATCTTTCTTACTAAAAAAGGAACTCGAACA
ACACATTATTGAAGCACATGAAAGTGTTTTGTATGAATGTAAAATTTGTG
GAAAGAAATACAAAGACAAGAACGTATTCAAGATACATTTTCAAAGGCAT
GGTAAGACATTTCAGTGTAAAGAGTGTGGAAAAATTCTTCGTTCACAATC
TACTTTAAAAAACCATGCGTACACCCATCAGAAAGTAAAACCATACAAAT
GCAGATTTTGTGACAAAACTTTTGCCTATAGTAATGGAAGGAACTATCAC
ATAAAAACTCACCACTTAGAAGAACAAGGTCTGAACCCTAAAAAGCAAGA
TTTTAAGTTTCACTCTTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057627-exon-scaffold_294-1491911889:132164..133705 | TCONS_00057627-exon-scaffold_294-1491911889:132164..133705 | Clytia hemisphaerica | exon |
| TCONS_00057627-exon-scaffold_294-1510915933:132164..133705 | TCONS_00057627-exon-scaffold_294-1510915933:132164..133705 | Clytia hemisphaerica | exon |
| TCONS_00057627-exon-scaffold_294-1575043694:132164..133705 | TCONS_00057627-exon-scaffold_294-1575043694:132164..133705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_294 | supercontig | scaffold_294:132164..133705 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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