TCONS_00057631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057631
Unique NameTCONS_00057631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length184

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057631 ID=TCONS_00057631|Name=TCONS_00057631|organism=Clytia hemisphaerica|type=transcript|length=184bp
CCAGGTGACATGTTTAAGATTGGACGGGCAACATTTGAGTAAAATATCCA
ACTTAGAAAAATTGGAGAACTTGAAATGGGCATCTTTCAATGATAACGAT
ATCACGAAAATTGAGGGTCTCGACAATTGTAAAGATCTGATTGAACTTTC
ATTGGCAAATAATTGTTTATCTAAAGTTGATGGT
Run BLAST on NCBI

transcript from alignment at scaffold_295:65..786+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057631 ID=TCONS_00057631|Name=TCONS_00057631|organism=Clytia hemisphaerica|type=transcript|length=722bp|location=Sequence derived from alignment at scaffold_295:65..786+ (Clytia hemisphaerica)
CCAGGTGACATGTTTAAGATTGGACGGGCAACATTTGAGTAAAATATCCA
ACTTAGAAAAATTGGAGAACTTGAAATGGGCATCTTTCAATGATAACGAT
ATCACGAAAATTGAGgtacttttttaataaaaaaaagaccctctgataaa
atattcttaacttttcgtgTAAAGTCTAGGTTGCCCAGGTAGgccaatta
gttttttttatcaagatATTGCTGTTCTTTTTCTCTTCTGCTCACACTTA
TCATAGattaaattgaattgaatactTTTTCGGAGCTGCTCGTTGGCACT
ttgatttgtcaaattgaattAGTCTAAGTGGGGGCCCTGGCTGGCCGTTT
GGATTTAAGGGggcgaatttttttttgaaaaatagtcgCCCTCCATGGTA
TTGGGACCAAGAAAGTTTGACACCTCTGAAACGTCATTTAAAAGCTATTT
AGCTCGACAAAAATAGAATTTGGCTTTAGTCTACGAAAAAAGTGATGGGC
CATGTCCCCTTTCCGGAGAGGGAGGGGGCGTGTGCTGACTAGGCACATGG
CACATGgcacttttttaccacaaagTCACACTTGTGGTCCGAACTAAATA
TTGAACACGAGAAAAAATTTACTTACGagattctatttttttttacgCTT
TAGGGTCTCGACAATTGTAAAGATCTGATTGAACTTTCATTGGCAAATAA
TTGTTTATCTAAAGTTGATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036349XLOC_036349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057631-exon-scaffold_295-1491911889:65..179TCONS_00057631-exon-scaffold_295-1491911889:65..179Clytia hemisphaericaexon
TCONS_00057631-exon-scaffold_295-1510915933:65..179TCONS_00057631-exon-scaffold_295-1510915933:65..179Clytia hemisphaericaexon
TCONS_00057631-exon-scaffold_295-1575043694:65..179TCONS_00057631-exon-scaffold_295-1575043694:65..179Clytia hemisphaericaexon
TCONS_00057631-exon-scaffold_295-1491911889:718..786TCONS_00057631-exon-scaffold_295-1491911889:718..786Clytia hemisphaericaexon
TCONS_00057631-exon-scaffold_295-1510915933:718..786TCONS_00057631-exon-scaffold_295-1510915933:718..786Clytia hemisphaericaexon
TCONS_00057631-exon-scaffold_295-1575043694:718..786TCONS_00057631-exon-scaffold_295-1575043694:718..786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:65..786 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00057631 vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.453e-20
Identity = 38/61 (62.30%), Postives = 54/61 (88.52%), Query Frame = 2 
Query:    2 QVTCLRLDGQHLSKISNLEKLENLKWASFNDNDITKIEGLDNCKDLIELSLANNCLSKVDG 184
            ++T L LDGQHL +I+NLEKLENLKWASF++N++TK+EGL++C +L EL+L  NC+SK++G
Sbjct:  888 KITALNLDGQHLFEITNLEKLENLKWASFSNNNLTKMEGLESCINLEELTLDGNCISKIEG 948
The following BLAST results are available for this feature:
BLAST of TCONS_00057631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRC94.453e-2062.30Leucine-rich repeat-containing protein 9 OS=Homo s... [more]
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