TCONS_00057639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057639
Unique NameTCONS_00057639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1025

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057639 ID=TCONS_00057639|Name=TCONS_00057639|organism=Clytia hemisphaerica|type=transcript|length=1025bp
ttttcgatcgcTAAAAAAGATAGGTAAAAAAGAGAAtatgtaaataaaaa
ataaacaaaatataatCATGGATGTTGATGAGAAAACGCCCTTGGGTGAA
AAAGACGCCAAACCTCAGACCGCCCAAACGCCACAGACCGCCCTTCAGAA
CCGCCCACAAGGACCAATTAACAAGCAAGATGCTAACTTCTTATGTGTCG
TATGTAGTGACCGCGCCTCTGGCTACCATTATGGTGTTCCAGCCTGCGAA
GGCTGTAAGGCATTTTTCAAACGTAGTTTACAGTCTAAAGATTTGAATTA
TAAATGCCCGGCCAAAGGGAATTGTGTGATTGATAAGATGAGTCGTAAAT
GTTGTCAAGCTTGTCGATTAAAGAAATGCCAAGATGTTGGAATGTCCAGA
GAATttctTGGCAGTAAAACCAAGAAGGTGAAAGGAGAACGTGGCAAAGA
TTATAGCAAGCcttccaaacaaaagaaaacagaacAGAGTGAGCAAACTG
AGAACTTAGTGGAAAGTACAATAAGTGCGAAAGAAGTCGAGCTGGAAAAC
ATGGTTGATAAATTAAATGTTCTCCATTCTGAATACTTCCTGAAAATCAA
AGATAAATCAGAACCCGGACAGGATGTTAAAGAACAATTGTGTACAACTG
TCGGACAACAATTAATACGGATAATTGACTGGGCTAAGAAACTGCCAGGG
TATTGCCAACTAGCTATTAGTGATCAAGCCATTTTGTTACAAGCTGCTTG
GGTAGATTTGCTTGTTTTGAACTGGCTTTATTTCTCAGTGATCTCCGAAG
GTGGACTTAACATTTCGAGATCATGCCATATTACTAAGGATGACGCTAAA
GAATTGGGATTCGATAATATTCATTCACACATTGTTTTATTGATTGATCG
AGCCAAGAAATATCGAATAGACGAAGAAGAAGTTGCATGCTTGAAAGCCA
TCAGCTTAACGAATGCTGAGTCGAGCAGCCTTGAGGGTCCAGACAAAGTG
AACGACCTTATCACGCAATTCAGCN
Run BLAST on NCBI

transcript from alignment at scaffold_295:18914..23128-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057639 ID=TCONS_00057639|Name=TCONS_00057639|organism=Clytia hemisphaerica|type=transcript|length=4215bp|location=Sequence derived from alignment at scaffold_295:18914..23128- (Clytia hemisphaerica)
TTTTCGATCGCTAAAAAAGATAGGTAAAAAAGGTAGGTAACTTTTTTTTA
ATGGCCCCAAAATGTAGTTTGCAATTTTAGCGATTTCTCGAGATCTCTTT
AAAATATGAACACAATTTTTTTACCACAATTTGGATATTTGATTGAGTGA
GAGGGTTTTGGGCATAAATTTGTTTGATAAATTTTTTACAATTCACCCCT
GGTTGTTAAAACGCAGGTTTGGGGCCCCCAAATGTTAGGTGTAGTGAAAA
TTTAATTATGAAGCCCAGTGGTAATAGGGGGAGAAACTATGAACATATAA
GAGTTGTGTGTTGTGATGAGAGAAAGAACATGAGTGAAAAAAGGAAGAAA
AGTGGTGCAGAAAATTAAAAAAAAAAAAACAGAAAAGAAGACTAGAAGAA
GAGTCAGCTCTAAGAATTATAGTTTGAATAGCAGACCTCTATAGATATAC
TTCCTATAACAAACTATTTTCGCTAGAGGATGAGCAGAAGCCTATAAGAA
TTTAGTATTAATTTTTGATTTTCACCTTCATGATGGTAAGGCTTTTCGGC
AGTCAGTGCATAATTTCAGAAAAAAATCTATTAGAATAAACATCAGATAT
ATCATCTTTTAACAAGAGAACTGCTTTATTCTTCTCATTCTCATTCTTCT
CATTCAAGTTTCGCCTCAAAATTTTCCGCTTTCGATTAGTAGTGGTAAAG
ATAAATAAGAGGGTAAAACGTACTGGGTTTGTTTTGTTATCTCTTGTTTA
TATGCGCAAATCTTCTATGGCTGTTATTTTTTGGTCTATGGTATTTCTTA
TATAGTTCTTACATTACGTCATTGTTTTTGAAATACGTGCCATTGAACAC
GCATACATGATTCTCTTTTTAATATGATAGGGGCAGTTGACATGTATAAG
TATAAGTTTAGTTTTGCCTTTTGATCTATGGTTGGCGAATCACAAAATGT
TATGTTGGGTATACACCTATTTTGCTATCTTATATCTAAATCATGTTTTG
GGCAGGAGTATATGGAATGTACGTAGGGTAAACACCTATTTTACTACACA
AACATCCGATTTCTTAGTAAAATGGGTAAAAATGGTCGAAAAATGGCGAA
AATAAGAACATATTAAGAACATTTTTAGGCTTAAAACCCAAAAAAATTTT
CTAGCGAAGAGGTGTACATTGCACGCTTGCACTTTTTTATAAGAAGCATT
TTACATGAACAATAATGAGGCTCAGAATGTCTAAAAAGTAACAGCAGCTA
AAAACAATGCTTAGATTGAAATGACTAATTTTTAAGGCACATGTTAAAAA
ACAGGATAAAAAAAGAATTTGAAGTTCATAGTTTAAAAAGATTAGAACAG
ACTAGTCTCCCCGGAACTTACAAGTCCTGATTAAAAATGCGTGTAATTTA
GAAGCCTGTACTGAAATCCTGTTTCATGGTCTTTGCTTGCTGCTTGTCCA
GTCAGTACAAATCTTAATTACCCATCAATGTAGTTTCTCAATCTACTAAT
GACTGTTTAGGTCGTTTGGGAGTGATTTCAAGCTAAATAATATAGTTGTC
CTTAGAGATTAATGGCATTAACGTCGTTTTGATGTGACGCTGACCTAACC
TGACCCGCTCAAGGTCAAATGCACATAAATTAGTGGTTTGCATTAAAATA
ATGTCTTTTTAAGGGAAGCGTTTTATGCTTAGTACTAACAACTTTAAGAC
CGATCATGTTCAAAATTGAATTCTGTACAATTTTTTTCATCCTATACTTT
CAGAGAATATGTAAATAAAAAATAAACAAAATATAATCATGGATGTTGAT
GAGAAAACGCCCTTGGGTGAAAAAGACGCCAAACCTCAGACCGCCCAAAC
GCCACAGACCGCCCTTCAGAACCGCCCACAAGGACCAATTAACAAGCAAG
ATGCTAACTTCTTATGTGTCGTATGTAGTGACCGCGCCTCTGGCTACCAT
TATGGTGTTCCAGCCTGCGAAGGCTGTAAGGCATTTTTCAAACGTAGTTT
ACAGTCTAAAGATTTGAATTATAAATGCCCGGCCAAAGGGAATTGTGTGA
TTGATAAGATGAGTCGTAAATGTTGTCAAGCTTGTCGATTAAAGAAATGC
CAAGATGTTGGAATGTCCAGAGAATGTAAGCTTGTTTTCCTTCCTTTCTT
TTAAAGTAAAATCTCTTTATGGCGTGCACCGCAAAACTGATATACGATTT
TTTGGAATTTTTTTTCGACCGTGAAAATAAGTTTTCACTAAATTAGTTGC
CTCCCCGTTTTCTCAAAGCAAAGGTAACGAAACCTTTTTATAAAAGACTT
ACAGAGATGATTGAAGATTATCATTATCTCCATCATTTCTGAATTTTATT
GATTATCTCCCTAATATTCATTGTTCAACGATTCAATCATTTTTCATTCA
GTTCTTGGCAGTAAAACCAAGAAGGTGAAAGGAGAACGTGGCAAAGATTA
TAGCAAGCCTTCCAAACAAAAGAAAACAGAACAGAGTGAGCAAACTGAGA
ACTTAGTGGAAAGTACAATAAGTGCGAAAGAAGTCGAGCTGGAAAACATG
GTTGATAAATTAAATGTTCTCCATTCTGAATACTTCCTGAAAATCAAAGA
TAAATCAGAACCCGGACAGGATGTTAAAGAACAATTGTGTACAACTGTCG
GACAACAATTAATACGGATAATTGACTGGGCTAAGAAACTGCCAGGGTAT
TGCCAACTAGCTATTAGTGATCAAGCCATTTTGTTACAAGCTGCTTGGGT
AGATTTGCTTGTTTTGAACTGGCTTTATTTCTCAGTGATCTCCGAAGGTG
GACTTAACATTTCGAGATCATGCCATATTACTAAGGATGACGCTAAAGAA
TTGGGATTCGATAATATTCATTCACACATTGTTTTATTGATTGATCGAGC
CAAGAAATATCGAATAGACGAAGAAGAAGTTGCATGCTTGAAAGCCATCA
GCTTAACGAATGCTGGTAAGTCAATTTCCAAGGCTGATTTTTCTGATTCT
TTCAGTTTGATTTTGGGATTGCCGTTTAATTTCTTGCAGGGGTAAATCCA
CTAAGAATTATACTTTCCCTAATTTTATTTTTAAACAGCCAAAAATATTA
TCTGCTGTCATCCTCAGAATTTAGTGAAAATCGTTGTGTCAAAGTGACCT
AATTAAGAAGGAGATGCTAAAGTCCAGAACGATTGTAATTGAAGTAATCC
TTGTGATAACACTTAAATTCTCTTGACACAGATTTCAATCCAAATATTAG
CGTAATAACAGAGTGATTCTACCATATCGTGCTTAAAAAACGAATATATT
TTCTCCACCTGGGTCAAACCAAGGTCATGAGTTCAATTTTTAATATTGTG
AAAGTTGAAGGGCTGCCATCGAAAATATTAAAATAAATAAAAAACTTCCT
GAGAGCCAGACGTTTTGTCCTGACTCAGCTCGATGTGAAAGTTTTGTGGT
TCTTTCATCCTGTTTTTGATACACTCACTTATCTTAAGTGCTTTTTTCGC
GTTTTTCGAATTCTAGAGTCACGAAATGACATTGTTAACCGGAAAGTTTC
ACTTTTTTGTCAAAGGAATAATGATGCAAGTTCTCATCACAAATGCTTTG
CAAGGAATATTGTCAAGCCTTGTTTTTGATAAGGAGTATGACGCAAAGAG
AAACTAAAAAAAAGTCCATTCAAGAGCGCTAAAATCTATGATTCCTAAAG
TTTTTTTTTGAGAGAGAGACAGTCCTTCCGATGAACGGAGCAGACCCTAT
CCAGGACAGCATTCACTATCCTAGAATAGGGAGATCACTGTGTTTACCTG
ACTCTGCCAACTCGTGCTTATGACACATCGAGTAGCTGGTGTATAGTTAC
TATACTCGAACGACTCGTGGTCAAACCTGACAAGTATTAGCAACCACACC
ACAGGGTCAGGCAAAGTTTTTTGAAAATGGAGAAAAAGAAAAAGAACTCT
TTTTGTTCATAGGCGCAACGATGGCCTTTGGACTGGAGATGGCTCGTTGA
AATATTTTGAAACAGTTTCTGCTCCCTATCAACTGAACATTCTTAAGACT
TGAAATCTAGTTAAAACCTTTCTTAATTCTTGTCTGAACCCTAAACAGAG
AAAGAACATGGTCAGGAATGGAATCTAAAATTTCTTTTTTTTTCATCTTT
GATTTTAGAGTCGAGCAGCCTTGAGGGTCCAGACAAAGTGAACGACCTTA
TCACGCAATTCAGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036354XLOC_036354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057639-exon-scaffold_295-1575043694:23097..23128TCONS_00057639-exon-scaffold_295-1575043694:23097..23128Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1575043694:21004..21375TCONS_00057639-exon-scaffold_295-1575043694:21004..21375Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1575043694:20164..20727TCONS_00057639-exon-scaffold_295-1575043694:20164..20727Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1575043694:18914..18970TCONS_00057639-exon-scaffold_295-1575043694:18914..18970Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1510915933:23097..23128TCONS_00057639-exon-scaffold_295-1510915933:23097..23128Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1510915933:21004..21375TCONS_00057639-exon-scaffold_295-1510915933:21004..21375Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1510915933:20164..20727TCONS_00057639-exon-scaffold_295-1510915933:20164..20727Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1510915933:18914..18970TCONS_00057639-exon-scaffold_295-1510915933:18914..18970Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1491911889:23097..23128TCONS_00057639-exon-scaffold_295-1491911889:23097..23128Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1491911889:21004..21375TCONS_00057639-exon-scaffold_295-1491911889:21004..21375Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1491911889:20164..20727TCONS_00057639-exon-scaffold_295-1491911889:20164..20727Clytia hemisphaericaexon
TCONS_00057639-exon-scaffold_295-1491911889:18914..18970TCONS_00057639-exon-scaffold_295-1491911889:18914..18970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_295supercontigscaffold_295:18914..23128 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.71441	7.02592	4.40756	3.32754	32.4156	31.0792	19.396	21.6529	15.6039	17.4679	12.2863	8.97995	29.4753	23.3951	29.7236	33.6935	19.5053	19.9238	35.4802	41.4717	12.3876	12.9724	16.2582	15.7249	14.7176	15.5553	9.32442	9.36406	11.5925	14.3827
Blast
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BLAST of TCONS_00057639 vs. Swiss-Prot (Human)
Match: ERR3 (Estrogen-related receptor gamma OS=Homo sapiens GN=ESRRG PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.207e-52
Identity = 101/275 (36.73%), Postives = 155/275 (56.36%), Query Frame = 2 
Query:  191 LCVVCSDRASGYHYGVPACEGCKAFFKRSLQSKDLNYKCPAKGNCVIDKMSRKCCQACRLKKCQDVGMSREFLGSKTKKVKGERGKDYSKPSKQKKTEQSEQTENLVESTISAKEVELENMVDKLNVLHSEYFLKIKDKSEPGQDVK--EQLCTTVGQQLIRIIDWAKKLPGYCQLAISDQAILLQAAWVDLLVLNWLYFSVISEGGLNISRSCHITKDDAKELGFDNIHSHIVLLIDRAKKYRIDEEEVACLKAISLTNAESSSLEGPDKVNDL 1009
            LC+VC D ASGYHYGV +CE CKAFFKR++Q  ++ Y CPA   C I K  RK CQACR  KC  VGM +E  G +  +V+G R        K K+   +E +  L    +   +     +V  L V   E    + D + P  D+K    LC    ++L+ II WAK +PG+  L+++DQ  LLQ+AW+++L+L  +Y S+  E  L  +    + +D +K  G  ++++ I+ L+ + K  ++++EE   LKAI+L N++S  +E  + V  L
Sbjct:  127 LCLVCGDIASGYHYGVASCEACKAFFKRTIQG-NIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKE--GVRLDRVRGGR-------QKYKRRIDAENSPYLNPQLVQPAKKPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKL 391
The following BLAST results are available for this feature:
BLAST of TCONS_00057639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERR34.207e-5236.73Estrogen-related receptor gamma OS=Homo sapiens GN... [more]
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