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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057681 ID=TCONS_00057681|Name=TCONS_00057681|organism=Clytia hemisphaerica|type=transcript|length=928bp
TCTGGACAGTTGTCAACTCCAGTTTGACACACCGAACGTTTTCTTTAGGT
TCATCAAAAGTAATATCAACTATTGCTTCTTTGTAAAATTTCACCAGCTC
AAACTTCCCACATTTCGAATTCGCATTACCTCTCATTTGAGAGATGTATA
ATTCAGTTTCATAGAAGCTGTCTTTTTTATAATCTTCTAACCCACTGACG
AAAACAattcttttgactttttgagtCGAATTAAACATAATTGTAATAGT
ATCTCCATTGTGAGGTGTTTTACTCCACATCGCCCCTTTTTTGGAATATG
GGTTTTCTAAGAAATTCTTCATATAAAAGTCTTTCAAGTCAGACTTGATG
ATAGCTGGTGGATTTCCGTTTCTCAATTGAAATCGACGTCTCCCGACCAG
TGGCAGATCTATAAGATTTGACCTCGTTTGGCCATCTAAGGAAGAGAACT
TTCCGATATGTAAGAACAAAGGTTCGCTTGTACGAAAGCTCTTAggattt
tgatataaaaagaTATTGTTATAAACTCGAAAAAGCCAGTCGACTGGCAT
GGTCCAAAAGAAATATCTGGTAAACTTTGCCAACGATTCTAGATGTTCTC
CCCGATAAGTCATTCCGATAAATCCTCGGGCACCGAACTCAAGGACCGAC
CAACGAAGTTTCTCGTTTTTCGTTATAAATTCCCGCATTTTCCCCATATA
ATCATCAACAGCAATTATATCATCTTCAAGCTGAACAAAATATTGCGCCA
TATCTTTACAGTAATAATACAAATATGAATAATCGAGGCACTGCTTCGAT
CTCCAGCGGACTCGATCTTGTTCATCACCAAAAAGTCTTGGCAAATTATC
CAGATTCTTAGGATAGTAGGCTTTATCAGGAGCAACCACTTGAATGATAC
CGTCTTTAACTTCGCCTGTAAAGTCCTG Run BLAST on NCBI transcript from alignment at scaffold_297:95198..99585- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057681 ID=TCONS_00057681|Name=TCONS_00057681|organism=Clytia hemisphaerica|type=transcript|length=4388bp|location=Sequence derived from alignment at scaffold_297:95198..99585- (Clytia hemisphaerica)
TCTGGACAGTTGTCAACTCCAGTTTGACACACCGAACATTTTTTTTAGGT
TCGTCAAAAGTAATATCAACTATTGCTTCTTTTTAAAATTTCACCAGCTC
AAACTTCCCACATTTCGAATTCGCATTAACTTTCGTTTGAGAGATGTATA
ATTTAGTTTCATAGAAGCTGTCTTTTTCATGTCCATCCATTCCGCTAGAG
ATAAAGATCCTCTTGATTTTCTGTGGAAAATTAAACATTATCATCAGTGT
GTCACCATCCTTAGGTTTTGTTGCCCACAATACACCTTTGCTCGAGTATG
GGTTCTCTAACACATTGCTTTTATAGAATCCCGATAAATCCGATTCTATT
TCGGCAACGGGATTTCCTTTTACCGATTGGAATTGTCGTCGACCAACTAT
CGGGATATCCTATAAATCCTCGAGTTTTCTCACTTGACCATCCAAGGATG
AGAATTTACCGACATGCAAGAAAACAGGTTTCTTTATGCGAAAATTCTTT
GGATTTTTATACAAGTAGATATCATTATAAACTCGAAAAAGTAAATCAAC
TGGCATGGTCCAAAAGAAATATCTGACAAATTTTGCTAACGATTCTAAAT
GTTCACCCCGATAAGTCATTCCGATAAATCCTCGGGCACCGAACTCAAGG
ACCGACCAACTGCGTTTCTCGTTTTTCGTTATAAATTCCCGCATTTTCCC
CATATAATGATCAACAGCAATTATATCATCTTCAAGTTGAACAAAATTTT
GCGCCATATCCTTACAGTAATAATACAAATATGAATAATCGAGGCACTGC
TTCGATCTCCAGCGGACTCGATTTTTTTCATCGCCAAAAAGTCTTGGCAA
ATTATTCAGATTATTAGGATAGTAGGCTTTATCAGGAGCGACCACTTGAA
TGATACCGTCTTTAACTTCGCCTGTAAAGTTCTGTCGAACATCTTTTACG
ACTTTCCTAAGAAAACTATCGTCAAGATCTGCCACAAAAATGACGATGAC
AGCATTTTTCTTTTCTGAAATGTTCATGTGTTTGAGCAAAGAGGATACCG
TTTGGATGACGTAATAGGCTTTACTTCTCTTGACGGTTGGAATCCCAAAA
ACAACGAAAGCTGAAAGATGGAAACTCATAGGATACATAAGGAAGTAAAA
TTCGTCTGGTGCATTTCCCTGATAGACTACCTACATTGAAATTTGGCTTT
TGGGAAAGATTAAAGTGGCTGGAAAAATATTTGTATGGAGATAATTTTAC
CTTTCCCTACTCGTTTCTGACCAAGTTTCAAATTGTTTGACTTGAAATAC
TTCTCAATGTCGTGTATTCCAGCAAAACCTTTTGAAAAGAAAAGAAAATC
ATATTAGAAGGTTACAATATCAAATAGTTTAAGGTATTGAATATTTATCA
AGTTAGGATTCCTTCTATATGGTCCTGAGTAGAATGTTTTGTCTTATATG
TCTACAATCTACATTTGGAGGTGTACCTAGAAGGATTTTACTTTTAAGTC
CCGAACCTCAGATTTAGATGAATATGATCATTTGTTGANTTATATGGTCC
TGAGTAAAATCTTTTGTCTTATATGTCTACAATCTACATTTGGAGGTGTA
CCTAGAAGGATTTTACTTGGTAAGTCCCGAACCTCAGATTTAGATGAATA
TGATCATTTGTTGACTCTTTTATTCCGAGAAATCAACAACAATATTGATG
ATAGATTTATGTAATAGCCAGAAAGCAACCACTGTAAAGTTACTTTTTGA
AAAGTTGACTTCGTTACTTGAACGGTTCCACGCTAAATTATTTCAAAGAT
CTCTGTCTAACATTGCATTCCACATCTTATACATTTTCTTTACTTCATCC
ACAAATTTTTCTGCTTTGATTTATAGAGTAGATAAAAAACTATAATTCCC
AATGAAGTTATGAAAATTTCACGAATTTCACTTTTTTATCTGGACACATC
GCAACTATATAGCCTGGTTGTTTTACCACATTAAAGAGAAAGATTTATGA
CATCCAGTTATCTTAGATTCAGCTTTAACATTTGACGATGAGAGATTTCT
TCAAAAATACAAGCCGATCAGTGACTCATCTAATTCATTTGATGTTTCTA
ATACTACACTTACATAAAACAAAAACTCTTCAAAGCATTTTCTAGGCCTA
ATTAATCTGTTCCATTAAAGACACAGTAAAATGATGATTGATGCAATTCA
ATTAATATATTTGGTCATATGAAAGCTCTTAATGAAAATTCCTCGAAACA
AAGAACAATGAAATCACATTTAAGGGCTCTGACCATGGTCAAGAGATCGG
TTATGAGCTGGTTATGAGTTTTGAGGACAAAACTTTTGTTTTGAGCTCCT
TGACACTTTTAACAAAAAATTGTCTATATAATTTGTTTCTGAATTTGTTC
TATCAGGAGTCATTAACAATTTACAAAAATGACGTTATAACCTTAAAAAA
TTTTGTACCCTCTTTTACTATAAGTGCTTAGTTTTATTGGGTAATTAACC
TTTTTGTTCCAAATTTTTTCTAAAGACCATCTAAAATATTTTGGAACAAT
TTTCTTAATTGATGTATCAAAAGGTATGATTCTTTTTACGAAAATACTCG
AATGAAAAATTGGTCAATAACCATTATTTTCAAGATTTTGAAACGAAAAA
ATTTCCCAAAAATATATTTTTCGTTCGGCAAAAGATACGGCGATCTATTT
CATATTTTCATTCAAGTTGGTGACCCCTCATTTGATCGAAAATTTTATGG
AGAATATGATGAGAGGTTTTATAAGGCTTGAGTGTGACTTTATAATTTGA
CTAAATTTTCAGGCGTTTTCAGTTGAAGACGTCATCAAAACAGGAAAATT
GTGATATCGCGCGATTGAATAGCGGTTGGGAGGTCGTTGAACCCTCATTG
GATCTAGAATTTAATAGAGAATAAATTGGAGGGGTCAGAGTGGGTATATA
GAAACTTTCGAAAAATGATATATCCAAATTGAGACATTTTGGGTCCAATG
ACGTTATCAAAACCTGAAAAATACAATATTTCGAGTTTGAGAAGGATTTA
AGCAATGGATGACCCCGCATTGGATCGGAAGTCATTGAGAGAATCTTTTG
GGTAAATGACAAATTGATTTCAGTGAAGTAAAGAATTTATTACCCTTTCA
ATGACGTAATGTAGGGCCCAAATGACGTCACAAAACATGAAATATGCGAT
TTTTCGAGTTTTGATCGGTCTTAAAGGGCAATTTTTCGTTCTTTGGGATT
AAACCAGTCTATAGTTTCCCCTTTACTACCCAAAGGGCTTATGATGTGCA
CAATAAAGCCCTTTGGATGGTGGGGGAGGGTAATAAGATTGAATTCTAAG
CCCAAAGGACGAAACATAGTAGTTATACACTTAGTATATAAATATTGTAA
ATCAACTAATAAGAATAGCAATTTCTTCAATAATCAACCAGTTTGGAATT
CCTTTCGTTTTCTTGACAGTTGTCAACTCCAGTTTGACACACCAAACGTT
TTCTTTAGGTTCATCAAAAGTAATATCAACTATTGCTTCTTTGTAAAATT
TCACCAGCTCAAACTTCCCACATTTCGAATTCGCATTACCTCTCATTTGA
GAGATGTATAATTCAGTTTCATAGAAGCTGTCTTTTTTATAATCTTCTAA
CCCACTGACGAAAACAATTCTTTTGACTTTTTGAGTCGAATTAAACATAA
TTGTAATAGTATCTCCATTGTGAGGTGTTTTACTCCACATCGCCCCTTTT
TTGGAATATGGGTTTTCTAAGAAATTCTTCATATAAAAGTCTTTCAAGTC
AGACTTGATGATAGCTGGTGGATTTCCGTTTCTCAATTGAAATCGACGTC
TCCCGACCAGTGGCAGATCTATAAGATTTGACCTCGTTTGGCCATCTAAG
GAAGAGAACTTTCCGATATGTAAGAACAAAGGTTCGCTTGTACGAAAGCT
CTTAGGATTTTGATATAAAAAGATATTGTTATAAACTCGAAAAAGCCAGT
CGACTGGCATGGTCCAAAAGAAATATCTGGTAAACTTTGCCAACGATTCT
AGATGTTCTCCCCGATAAGTCATTCCGATAAATCCTCGGGCACCGAACTC
AAGGACCGACCAACGAAGTTTCTCGTTTTTCGTTATAAATTCCCGCATTT
TCCCCATATAATCATCAACAGCAATTATATCATCTTCAAGCTGAACAAAA
TATTGCGCCATATCTTTACAGTAATAATACAAATATGAATAATCGAGGCA
CTGCTTCGATCTCCAGCGGACTCGATCTTGTTCATCACCAAAAAGTCTTG
GCAAATTATCCAGATTCTTAGGATAGTAGGCTTTATCAGGAGCAACCACT
TGAATGATACCGTCTTTAACTTCGCCTGTAAAGTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057681-exon-scaffold_297-1575043694:99549..99585 | TCONS_00057681-exon-scaffold_297-1575043694:99549..99585 | Clytia hemisphaerica | exon |
| TCONS_00057681-exon-scaffold_297-1575043694:95198..96088 | TCONS_00057681-exon-scaffold_297-1575043694:95198..96088 | Clytia hemisphaerica | exon |
| TCONS_00057681-exon-scaffold_297-1510915933:99549..99585 | TCONS_00057681-exon-scaffold_297-1510915933:99549..99585 | Clytia hemisphaerica | exon |
| TCONS_00057681-exon-scaffold_297-1510915933:95198..96088 | TCONS_00057681-exon-scaffold_297-1510915933:95198..96088 | Clytia hemisphaerica | exon |
| TCONS_00057681-exon-scaffold_297-1491911889:99549..99585 | TCONS_00057681-exon-scaffold_297-1491911889:99549..99585 | Clytia hemisphaerica | exon |
| TCONS_00057681-exon-scaffold_297-1491911889:95198..96088 | TCONS_00057681-exon-scaffold_297-1491911889:95198..96088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_297 | supercontig | scaffold_297:95198..99585 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006759 | Glyco_transf_54 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016758 | transferase activity, transferring hexosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
Blast
BLAST of TCONS_00057681 vs. Swiss-Prot (Human)
Match: MGT4A (Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT4A PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 4.982e-39 Identity = 88/277 (31.77%), Postives = 143/277 (51.62%), Query Frame = -1
Query: 143 QDFTGEVKDGIIQVVAPDKAYYPKNLDNLPRLFGDEQDRVRWRSKQCLDYSYLYYYCKDMAQYFVQLEDDIIAVDDYMGKMREFITKNEKLRWSVLEFGARGFIGMTYRGEHLESLAKFTRYFFWTMPVDWLFRVYNNIFLYQ--NPKS-------------FRTSEPLFLHIGKFSSLDGQTRSNLIDLPLVGRRRFQLRNGNPPAIIKSDLKDFYMKNFLENPYSKKGAMWSKTPHNGDTITIMFNSTQKVKRIVFVSGLEDYKKDSFYETELYI 928
++F+ E+ G+++V++P ++YYP +L NL FGD ++RVRWR+KQ LDY +L Y ++ Y++QLEDDII +Y ++ F + W +LEF GFIG ++ L + +F F+ P+DWL ++I + NP+ R LF H+G SSL G+ + L D + ++ + NPPA + + LK Y + LE Y + W+ TP GD I F+ V+ +F SG +++ D T + +
Sbjct: 194 KEFSKEISSGLVEVISPPESYYP-DLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDLTLIVEFIFMFYKEKPIDWLL---DHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLHSSLSGKIQ-KLTDKDYMKPLLLKI-HVNPPAEVSTSLK-VYQGHTLEKTYMGEDFFWAITPIAGDYILFKFDKPVNVESYLFHSGNQEHPGDILLNTTVEV 463
The following BLAST results are available for this feature:
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