TCONS_00057695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057695
Unique NameTCONS_00057695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057695 ID=TCONS_00057695|Name=TCONS_00057695|organism=Clytia hemisphaerica|type=transcript|length=2245bp
GGTAGATACACACATATACACATTCGGTGAAATGTAATATAAAAAGTAAA
GAACAAATTAGAAATCTTATGAAAATCTGCTGAAATTATGCGGAAAAGAT
TAAGAAACAGTAGAAACCATCAAACAGAAAACACGTGACTAGCATAACCG
TTCAAAACACTTTTACATAGCTTCTGCACCAAAATATCACATTATGAACA
GGCTTACTGGTTTGGAATTTAGCGTAGTGCTATCGCTTATATCAACTCTA
GTCACGTGTCAAAATATACCGAATTTGATTGGCCCTCCGCCGCCAAGTTT
TGAACAAATCAACCAAACTAATCTGGATACGCTTTGGGataaatattttc
agaattgGCTTCATGATGCGAATGAAGATATCAATCTTTTGGCCGCCGTT
GGATCGCCCTTCCCGCCTGACGTACGCGCGGTCACCGGACCCTTTGGTCG
TTTTGGCCGCCCAGCTGTCGAATTCACACCAAACAGTTACGTCGGAAGAT
GGGCCAGGGACCTACTCCCGATCCCTTTTTTCTGGAATTTCGGAATCAAA
ATCTCTCTTTTCTTACAATCAATCTACGGTGGAGTACTTTTCAGTGTCTT
AGAGTACGATCATTCGAAAAGTATCCTTGCTCTGAACGTTCTACAAGCGT
CAAACAATAAACATAAGATCGAATTTATTTACCGGAGTAAGAGTGGAACA
GAAGAAGAACGGAACTTGGTAGCAAGCTTCTTAGTACCACGAATGGATCG
ACGTTGGAATGTTTTCAGTATAACTGTGGTAGACCAAGAAGTCACCCTTT
ACTTCTCCGGATGTGATCGCGTTTTGAGGAAAGTTTTCAAACATGAAAGA
AAAGCTTTAGATGTACGTTCCAATTCACCCATCTTTCTTGGCAATGCTGG
ATGGTATATAAAGAAACCTGCTCTCTATGGTGCAATTTATGATCTGACCA
TGTTCAAAGATTACCGTGATGCTATTCCCAAATGTCACGTGGATTCCCGA
AAAACTGAGGTTGCTAAAGAGGAAAGGGGACAATTTAACACAACGACCAC
TTCTCTTCCGACTACCACAACTACAACAACGACCACCCCTACTACGACAA
CGACCACTCCCACTACGACAATGACCACCCCTACCACGACAACGACCATT
CCTACTACTACAACAACGACCACCCCTACTACGACAACGACCACTCCCAC
TACGACAACGACCACCCCTACCACGACCACCCCTACCACGACAACGACCA
CTCCTACTACTGCAACAACGACCACCTCTACTACAACAACGACCACTCCT
ACTACAACAACGACCACTCCTACAACGACGACGACCACCCCTACTACAAC
AACAACTACCAACCCTACCACGACAACGACCACCCCTACTACAACAACGA
CCACCCCTACCACAACAACGACTACCCCTACTAGAACAACAACTACCAAC
CCTACCACGACAACGACCACCCCTAGTACAACAACGACTACCCCTACCAC
GACTACCCCTACTACAACAACAACGACCACCCCTACCACAACAACAACCA
CACAAACTACAACAACAACCACCCCCACAACAACGACCATTATGCTTACT
ACATCAACGACCCAGCCTACAACAGAGACTTTGGCAACAACAGAATACAC
TACACGAGACACAATCGAAAGTACAAAACGAAGAACTTCAACTTTTGAAA
TGCCAACACCCACCCCATACACAGCTGACCCTGATTTCTCCAAAGTTCTT
ACTTTATATCCTAAATCTACTGACGAGCCTTTTATTTCCAGTACACCTGC
GACTGTTAAAGACTTACGCAACGAAATCAAGAAAGAGCTAGAGAGGATTA
AGTCGGCTTTAAATGAACTAGGAGATAAAACAAATGATCTCCCTTCACCA
AAACCATCTGCCCCAACTTCCGTTGAAGAGCAAATGGCAGCCAAAGAAAT
TTTTAAATTAGAGCAAGCACGCTTAGAACTATTAGACGAAATTAAGGAAA
TTGATAATACACTGATTATGCTGAAAGTGAAAAATAATTTGACGACGACA
AGGAGTAGTGTAAATACAACTGATGTGAATCAGGGGAATGGAACCGAGAC
TGGAACGAATGACAGACGGTTTGGTGACTCGCTGGACGAGATCGTTGACC
GTGTTATTGAAAAGatgGAGGCGAAGAAAGAGGAATGTAATTGCACCAAA
GAAAAAGAATCTACCAATCAAGACTTTGAATTAATTGCCCAGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_297:128891..134794-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057695 ID=TCONS_00057695|Name=TCONS_00057695|organism=Clytia hemisphaerica|type=transcript|length=5904bp|location=Sequence derived from alignment at scaffold_297:128891..134794- (Clytia hemisphaerica)
GGTAGATACACACATATACACATTCGGTGAAATGTAATATAAAAAGTAAA
GAACAAATTAGAAATCTTATGAAAATCTGCTGAAATTATGCGGAAAAGAT
TAAGAAACAGTAGAAACCATCAAACAGAAAACACGTGACTAGCATAACCG
TTCAAAACACTTTTACATAGCTTCTGCACCAAAATATCACATTATGAACA
GGCTTACTGGTTTGGAATTTAGCGTAGTGCTATCGCTTATATCAACTCTA
GTCACGTGTCAAAATATACCGAATTTGATTGGCCCTCCGCCGCCAAGTTT
TGAACAAATCAACCAAACTAATCTGGATACGCTTTGGGATAAATATTTTC
AGAATTGGCTTCATGGTAAGTTTAACTATCTGGGAACTGGGCTCTAGGGA
CCTGCTTACTTTCTTTAACGTTAAATTCCAAACTCGTACTCGGACCATTA
GTTTGGTTTTATAATACAGAAACTTTCATGAAAATTTTTACTACATACAT
CAACAAAACAAAAATTAGTACAANCACTTTTTATGATTCAGAAACATTAA
TGAAAGGTTTTACTTCGTCCATCAACAAAACAAAAATTAGTACAAATGGC
TCTTGGCATTGGATTAGTTCGATTTCTCTTTGACTTATTTAGGGGTTTTG
ATATGAAGTTAAGTATCTACGCTTTTGCGAATGTAGGAACGGCTGCAACA
CTTGGAGCAACTCGCACTTTTTGACCTGTACGTTTGTGGATGGTAAAAGC
ACTGAAACAGTCGTCCTCAGTCAATTTATCTGCCTCTGCCATTTTTAAAG
GCAAAAGGCATTTTACATACATGCTCGCATTTTTCTATTTGACTATTGGC
GAAAATTATCATGAGTTTGCTCTCCAAAAAGAAATCTTTCTATCAATTTC
TAGACGTGAAGTCATTCTTTATATCACGACAGCTATTGTAAAAATATTTT
TTAAGGGTGGGAGAATTTTTATTTGGAGTTTGACCGTTTTTGGTTTCTCA
GCTCCTCCCATGGGAGTGTTGATATATCGTGAAAAAGTTATAACTTTGAC
CTGATGTTTGTTAAAACGGGCGATATACATTCCATTACTCTGTCTGCGGT
CTGATGGGCTTCTGTGATTACATTTGAGTACGAATTCTGGAATATTGTTA
TTTGAGATTCAACCACCGTGACTTTTTAAATTCGTAGACGAATTTAGATT
CCCTTGAAAATATCTTGTTTAACTTTAATCTTTATGTAACTATTGTTGAA
TATAACAACCTACATTGGTTTGAAAAGAAAAGTTACGATATGACAGGGAA
GGGCTTTATCTTCTAATATCCAACACGGTTGATGCGAATGATGAAAATTC
AAAAATATACAAAAAGCAAAATACATTCTCTGTATCGCCCCCATTTTCGA
GATTTGAACTTCCATTATTCGAATTTTTCTACAACTTTGACAAAGGCTGG
CAGCTCATTTTCCCCTCGTGAAGAGGGAATCATTATAAATATTTTTTTAA
TAGACGACATTGGCTTAACGTGAAAACTCAGATTTGACCTCCGAAAATTG
CCCACAATGATTTTTTCTCGCACAAAGCATTGTGGGAAATTCTTGGGGGT
AAAATCTGAGTTTTTATGTGAAGCCGATATCGTCTATTGATTCTTTTCAA
TTAATTTAAAAATTCGAATGTCTATGTAATTCCAACAGATCAATAAATTC
TCCATATTCCCGCTCGAGTTTTTGAGAGTCAATTTATCGTTTATGTGTTG
TAATTTTGAGCAGACTTTTTAAACATAAACTCGCACAAAAATAGAATACC
TGAGACCCTTTGCCACCTTATGACGTGTGGCTTGTGTTAAATGAATTTCA
AAACCGCGATAAAATAAACTTTCTTTCACCTATATTTCTATACTCTCCCA
TAATGAAATTTTGGTGTTCGGGTTGATTGATTTATATGTGTTTTATCCTT
TAAATTTCGTGTACTTTTATATCATTTGGTGGGATTGCAGATTTGAAGGA
GAGAGAGGGAAAAGCTGAGAAAAGGCAATACTTGTAAGGAGTGGTAATAA
CAAGAACTGATTTAATGGAACAATTTTGAGAAGCCCTCGCATGAACAAAT
AAGCTTTCTCCTACGGAATGCGAACTTTGATCTTCATTTTCATCTCCTCT
CTCCATTTTACAGATGCGAATGAAGATATCAATCTTTTGGCCGCCGTTGG
ATCGCCCTTCCCGCCTGACGTACGCGCGGTCACCGGACCCTTTGGTCGTT
TTGGCCGCCCAGCTGTCGAATTCACACCAAACAGTTACGTCGGAAGATGG
GCCAGGGACCTACTCCCGATCCCTTTTTTCTGGAATTTCGGAATCAAAAT
CTCTCTTTTCTTACAATCAATCTACGGTGGAGTACTTTTCAGTGTCTTAG
AGTACGATCATTCGAAAAGTATCCTTGCTCTGAACGTTCTACAAGCGTCA
AACAATAAACATAAGATCGAATTTATTTACCGGAGTAAGAGTGGAACAGA
AGAAGAACGGAACTTGGTAGCAAGCTTCTTAGTACCACGAATGGATCGAC
GTTGGAATGTTTTCAGTATAACTGTGGTAGACCAAGAAGTCACCCTTTAC
TTCTCCGGTATAATTTCATGCTTTTCATGCTAACAAGAAACCTTAAAACT
TTTTATTTGGCAGTCTATTTAAAGTGAAGAAAAATCTTTTGAGATATTGT
AATTTTAGAGCATCGTAGACTTTCTACTTTTGTGTTTTTCCATCTTTGAC
TTCGACTTTCATTTCTTGGAGATTGAAATGATAATGATTGAAGTGAAACC
AAGATTCAAGCCATCATATTCCTCTTTACTTTTAGGATGTGATCGCGTTT
TGAGGAAAGTTTTCAAACATGAAAGAAAAGCTTTAGATGTACGTTCCAAT
TCACCCATCTTTCTTGGCAATGCTGGATGGTATATAAAGAAACCTGCTCT
CTATGTGAGTCCTGTCTCCAACCCAGCTGGCACACAACGTCTTTTCAATG
TTCATCTAACGTTCACAACGTCCATATAACGTTAGTTGAACGTTGAAACA
ACGCTGTGTGCCAGCTGGGAAGAATAACCGATGATATTATAACTCGTGAC
AAATAACTCAACTTCACTCTCAATTCGAGCCTACCTCCCCTAGAATCAAT
GTTGGATGAATCCCTTAACGTGGATACTATCGTCCTTCTGTATTGGACAA
ACAGTTTTGTACATCAAGTTACTGACTGTTGACTCTCTCTCTAATTCGAT
CTTCAAGTGACCAAGAATTTCCTTCGAATTAAAGAAAGATTCGAGTATTT
TAGTATTTTTTAGCTGAAGACTGGACTGGAAACATCGATTTTGAGCACAA
ACTATCTTTCGTCTTTCCTCGGTTTTACTATAGGGTTGGTGACTATCAGA
ACATTCTACTACTATCATTCGCTATTCATANGTCTTTCCTCGGTTTTACT
ATAGGGTTGGTGACTATCAGAACATTCTACTACTATCATTCGCTATTCAT
ATTTCCTTTTGTTCAGAACATTCTGCTACTATCATTCGCTATTCATATTT
CCTTTTGCTTCAGGGTGCAATTTATGATCTGACCATGTTCAAAGATTACC
GTGATGCTATTCCCAAATGTCACGTGGATTCCCGAAAAACTGAGGTATTT
ATGCTTTTCATTGTGCAAGGCTTGTCTACCTTTTGAAACATTTCCCTTGA
CGATTATCCAGCTGTGAAGTTTTTGTTTTCATCCTTGCAATCGTCTATTT
TTTGTCTTAAGGTTGCTAAAGAGGAAAGGGGACAATTTAACACAACGACC
ACTTCTCTTCCGACTACCACAACTACAACAACGACCACCCCTACTACGAC
AACGACCACTCCCACTACGACAATGACCACCCCTACCACGACAACGACCA
TTCCTACTACTACAACAACGACCACCCCTACTACGACAACGACCACTCCC
ACTACGACAACGACCACCCCTACCACGACCACCCCTACCACGACAACGAC
CACTCCTACTACTGCAACAACGACCACCTCTACTACAACAACGACCACTC
CTACTACAACAACGACCACTCCTACAACGACGACGACCACCCCTACTACA
ACAACAACTACCAACCCTACCACGACAACGACCACCCCTACTACAACAAC
GACCACCCCTACCACAACAACGACTACCCCTACTAGAACAACAACTACCA
ACCCTACCACGACAACGACCACCCCTAGTACAACAACGACTACCCCTACC
ACGACTACCCCTACTACAACAACAACGACCACCCCTACCACAACAACAAC
CACACAAACTACAACAACAACCACCCCCACAACAACGACCATTATGCTTA
CTACATCAACGACCCAGCCTACAACAGAGACTTTGGCAACAACAGAATAC
ACTACACGAGACACAATCGAAAGTACAAAACGAAGAACTTCAACTTTTGA
AATGCCAACACCCACCCCATACACAGCTGACCCTGATTTCTCCAAAGTTC
TTACTTTATATCCTAAATCTACTGACGAGCCTTTTATTTCCAGTACACCT
GCGACTGTTAAAGACTTACGCAACGAAATCAAGAAAGAGCTAGAGAGGAT
TAAGTCGGCTTTAAATGAACTAGGAGATAAAACAAATGATCTCCCTTCAC
CAAAACCATCTGCCCCAACTTCCGTTGAAGAGCAAATGGCAGCCAAAGAA
ATTTTTAAATTAGAGCAAGCACGCTTAGAACTATTAGACGAAATTAAGGA
AATTGATAATACACTGATTATGCTGAAAGTGAAAAATAATTTGACGACGA
CAAGGAGTAGTGTAAATACAACTGATGTGAATCAGGGGAATGGAACCGAG
ACTGGAACGAATGACAGACGGTTTGGTGACTCGCTGGACGAGATCGTTGA
CCGTGTTATTGAAAAGGTAGCTAATGTTTTTGCTGATCTGCTAACCAAAA
AAGTTTCTGTTCTTACAGATATTAGAATATATAAGGGTTATGATAACGAA
CAAAAAAGTAAACTCAACTCAGTTCACAATATAACAAAGATCGTGGTAAT
GTTTTTCAGAGGTCTTCAGACTAACATTTTTGGCCGTTAAAAAACTCATC
AAAGACACAATACCGTCCTTACCATGGGAAAGTTTTATGAGTATGGTTGA
TAAAGATCTTGAGGAAGATACCAAAATACTGATGGTTTCAAACACTTTTA
AAATGATTAATCTATTCAAGCCATTAGGATCCACTACCACTTAAGATGGG
CGTCTTATTTCTCCTAGTATGAAACTGAAAAAAAACTTTTCTGTGGTTTG
CACGGCCAACTTTTTGCCCTTGCCTAGTCTATAATTGTGAATTAAAGTTG
GCAGAAAAATGTCAATACATTGAGTTCTTTTGACGTCGATGCAATGACTC
CTTTCAATCTTTTTCAAGCAAAGATTTGACTGCTAACTTTGTGGCTACTT
TTTGCTTGCTACAGCCTGCTATTGTTATTACAATTGGCAACTGGAATTTA
AAGGTTTTGTTTTTAAATATAAGAGTGATATCGTTTGCTTACTCATCAAT
TTTAATTCGCAAGCTTTTTCACATTGGATTGACACGATTGTGGCGCAAGA
TTGGTCAGAAAGAGGAAAGGAAAAACAGTTATTTGCTTATATCAGCATAA
TATAACAATAGCAAGACACTGTCCTAATATGAAATATGTGTCTGATATGA
AACGGAAACACTTATGTAAAACAAAACCTTTAAGCACCCGAGAATACGAT
TGATTGTTTGGAAACGATGACAATACATTCCCACTTTTCATTTATCACCA
TTTATCAATACTTTTTTCTTTAGATGGAGGCGAAGAAAGAGGAATGTAAT
TGCACCAAAGAAAAAGAATCTACCAATCAAGACTTTGAATTAATTGCCCA
GAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036377XLOC_036377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057695-exon-scaffold_297-1575043694:134430..134794TCONS_00057695-exon-scaffold_297-1575043694:134430..134794Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1575043694:132188..132631TCONS_00057695-exon-scaffold_297-1575043694:132188..132631Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1575043694:131841..131959TCONS_00057695-exon-scaffold_297-1575043694:131841..131959Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1575043694:131151..131231TCONS_00057695-exon-scaffold_297-1575043694:131151..131231Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1575043694:129879..131033TCONS_00057695-exon-scaffold_297-1575043694:129879..131033Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1575043694:128891..128971TCONS_00057695-exon-scaffold_297-1575043694:128891..128971Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1510915933:134430..134794TCONS_00057695-exon-scaffold_297-1510915933:134430..134794Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1510915933:132188..132631TCONS_00057695-exon-scaffold_297-1510915933:132188..132631Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1510915933:131841..131959TCONS_00057695-exon-scaffold_297-1510915933:131841..131959Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1510915933:131151..131231TCONS_00057695-exon-scaffold_297-1510915933:131151..131231Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1510915933:129879..131033TCONS_00057695-exon-scaffold_297-1510915933:129879..131033Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1510915933:128891..128971TCONS_00057695-exon-scaffold_297-1510915933:128891..128971Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1491911889:134430..134794TCONS_00057695-exon-scaffold_297-1491911889:134430..134794Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1491911889:132188..132631TCONS_00057695-exon-scaffold_297-1491911889:132188..132631Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1491911889:131841..131959TCONS_00057695-exon-scaffold_297-1491911889:131841..131959Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1491911889:131151..131231TCONS_00057695-exon-scaffold_297-1491911889:131151..131231Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1491911889:129879..131033TCONS_00057695-exon-scaffold_297-1491911889:129879..131033Clytia hemisphaericaexon
TCONS_00057695-exon-scaffold_297-1491911889:128891..128971TCONS_00057695-exon-scaffold_297-1491911889:128891..128971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:128891..134794 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.578876	0.356987	5.40171	4.09065	25.0745	31.717	13.7365	18.076	2.89869	3.81107	16.8617	12.055	4.54078	2.14475	13.077	21.75	24.2728	21.2506	18.1974	18.9246	11.6411	10.8222	21.8192	22.2904	110.09	101.22	18.2335	24.6837
Blast
[Close]
BLAST of TCONS_00057695 vs. Swiss-Prot (Human)
Match: COFA1 (Collagen alpha-1(XV) chain OS=Homo sapiens GN=COL15A1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 8.531e-22
Identity = 72/217 (33.18%), Postives = 110/217 (50.69%), Query Frame = 2 
Query:  380 INLLAAVGSPFPPDVRAVTGPFGRFGRPAVEFTPNSYVGRWARDLLPIPFFWNFGIKISLFLQSIYGGVLFSVLEYDHSKSILALNVLQASNNKHKIEFIYRSKSGTEEERNLVASFLVPRMDRRWNVFSITVVDQEVTLYFSGCDRVLRKVFKHERKALDVRSNSPIFLGNAGWYIKKPALYGAIYDLTMFKDYRDAIPKCHVDSRKTEVAKEERG 1030
            ++L   +G P P  V  VTG +G F  PA  F P + VGR AR L+P  FF +F I + +   S  GGVLF++ +       L L  L    + H+   +Y ++ G+   +   A+F VP M  RWN F++ V  +EVTL  + C+   R  F+   +AL   S++ IF+GNAG    +    G++  LT+  D R   P+   D  ++  + E  G
Sbjct:   41 LDLTQLIGVPLPSSVSFVTG-YGGF--PAYSFGPGANVGRPARTLIPSTFFRDFAISVVVKPSSTRGGVLFAITDAFQKVIYLGLR-LSGVEDGHQRIILYYTEPGSHVSQE-AAAFSVPVMTHRWNRFAMIVQGEEVTLLVN-CEEHSRIPFQRSSQALAFESSAGIFMGNAGATGLE-RFTGSLQQLTVHPDPR--TPEELCDPEESSASGETSG 248
The following BLAST results are available for this feature:
BLAST of TCONS_00057695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COFA18.531e-2233.18Collagen alpha-1(XV) chain OS=Homo sapiens GN=COL1... [more]
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