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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057698 ID=TCONS_00057698|Name=TCONS_00057698|organism=Clytia hemisphaerica|type=transcript|length=2332bp
ATTTTTAAGTCAATCAGTGATCTACTTTGGGGTAAATTTTCGAATGAAGT
AGttgatcttttttctttttcatttttaaattccTTTTCTTAAATAACAT
TAAACtcatgaatatcttttcaaccaGAAAATCCTATAAAAAGCAACAGA
CTATTTGGTCTCCAATATACTTTGAAACAGACTGTATCAAGAAAATGGTA
AAGACTTTCATACCTGCAGAAAATGGTTGGGCACACATTTTTCTCGTCTT
TTTAGAAACCAGAAAATAATCATTACTGATACATCCACCaacaattttca
ttatttttatttataaaatgcTAAAAGTAAGAGATACTGGATATTAGCGG
AGCGGTAGAAATTGCTTCTTAAGAAAATAGAATCTTGGGACATAATGTTT
GTGAAATCAACAGAATACAAGGAAAAATGATTTGTAAATAGCAGTGAGGT
ATATAAAGAAATGTATGTAAGGAAGTTTAATTTTTATTCTCAATATTATA
CATAGATAGATACTGTAtcataattttcatttcaagaaagaaagtttaaa
aaattgacttcaagAGTTTTTTAAAATAAGCAAATCCTGAGTTCGAGGAA
TGCCTTAGCAAATACGGTTGATTTCGTTTGCTAGAGGGTTGAGCATAGAA
AACACTGCACATAGGTCCCAAGGTCtactcattttttgaaaagcttggAA
AGAGAGAGAAAACAGGGTTATAAAATTTTGCAAAGGAGGTAACAAGAGAA
AGTTTGGAATGCTTAATAATAAACTTGGTTATAAATGATACATGTTTAAA
TTATCTGAGGTTTACTACTACataaatttccttaaaaaatgtaaaaaaaa
ttgttgataaATAGAGTCTTTGATTACTTTAACCATAGAAATAATAATTA
TTAGTATGAAATTTGACAAGAAATACTTATCTTGAAGTATTATTGTGATT
TAAAGCATTTAGTTTAAATATATTTTGGATAGGGAAATTCTACTACgagt
aaaaaaaagaagacttcaAGCGAGATAACGACTAAATTTGCTAAAAGTAT
GTGAAATAATATTCTGGTTCGGAGATCTGAGATTGACTTTTTCTGAaatc
taatacaccttttcgaccgtagtcgcgcggtaaGGCGCGTGCCACTCAAT
TATTTAATtgtccccctaaactcgatccaatccttttttgccaCCTTTTT
TTATTGTCTATATATGcgaaaaaaaaggattgggacggttttagtgggat
aaagcggacaaaaaaatgcccgcacggcAATTGGCGGTTACGGTCGAAAG
GGTGTATTTCAATCACCAATGAAACACCAcactataaaaataaaaacttt
tccaATTTGATATTCATTAACAGACAAATACATAAGGACAGAGTTTTTCG
ACAACCAGCGAAAATTCTATCACGTCTGATGTGTCGTTAAGAACAAACAA
ATCTTATGGATTTTTATTGGGCAGGTGAAGTCCAACACATCGTTTTTATC
GAGCCGTTCTTGAGAAAGTGGCCCTAAAATATGGTATGGTGTGGTATTTT
ATGTACAATTTAGCTTACTTTCAATTCTAACTATCCCAAATATCTGTTAA
AGTATTACTTCAACTATACCTACAACCTTTTCCAATGTTCTTGTATTCAA
GTTTTCtcatattgtttgttttttcatcTTTCCATCTTTTTGGTTATATG
GAAGGATAAAGATCGTACAGGTCATTTAGCTACAGGGTAAGCTTCTCTGC
CGTCAGTGGCAGTGTTTCATTCCTAACTATGCTGCCATCCATATTTTACA
ATTGTCCGAAAAAAAGAAATACCCATTCTCATGAATTCTCGGACGTTTCT
TTTGGATCAAAAGAATCGTTTAGTGTTCCAGAAATACTCAATTCTGATTG
GTTGTCAAGCATTGCCATGGGAACAAGATTGGTACCGACTTTCGATCCAC
GTGGACTGGACGAGAACGCAGCATCGTCAAAAGAAGTTGAGCTTTGAAGA
CTAGCAGCACGTGACCTATCCACCAGCTTGCTCTTCTCTGAAAAGTGAGa
agtgaaaaaaacaaattcttgATATgagtaagtcatttttctagcggaaa
cacccgaaaaaaccgGGATTTaacctctctctgttactaaaaatagaaac
acggaggtcaaaatccggcttttttcgagtgcttccgttaaaaaatatga
cgtcatcttcaagatttaaagttctggcgagaaagtcgattttgggctat
ttcTTTAACttgatcgaatatttcaatttgggaggggttggcagacttcc
aggctatATTCTGAGCCTTGTTGGACTATTTT Run BLAST on NCBI transcript from alignment at scaffold_297:217829..221046- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057698 ID=TCONS_00057698|Name=TCONS_00057698|organism=Clytia hemisphaerica|type=transcript|length=3218bp|location=Sequence derived from alignment at scaffold_297:217829..221046- (Clytia hemisphaerica)
ATTTTTAAGTCAATCAGTGATCTACTTTGGGGTAAATTTTCGAATGAAGT
AGTTGATCTTTTTTCTTTTTCATTTTTAAATTCCTTTTCTTAAATAACAT
TAAACTCATGAATATCTTTTCAACCAGAAAATCCTATAAAAAGCAACAGA
CTATTTGGTCTCCAATATACTTTGAAACAGACTGTATCAAGAAAATGGTA
AAGACTTTCATACCTGCAGAAAATGGTTGGGCACACATTTTTCTCGTCTT
TTTAGAAACCAGAAAATAATCATTACTGATACATCCACCAACAATTTTCA
TTATTTTTATTTATAAAATGCTAAAAGTAAGAGATACTGGATATTAGCGG
AGCGGTAGAAATTGCTTCTTAAGAAAATAGAATCTTGGGACATAATGTTT
GTGAAATCAACAGAATACAAGGAAAAATGATTTGTAAATAGCAGTGAGGT
ATATAAAGAAATGTATGTAAGGAAGTTTAATTTTTATTCTCAATATTATA
CATAGATAGATACTGTATCATAATTTTCATTTCAAGAAAGAAAGTTTAAA
AAATTGACTTCAAGAGTTTTTTAAAATAAGCAAATCCTGAGTTCGAGGAA
TGCCTTAGCAAATACGGTTGATTTCGTTTGCTAGAGGGTTGAGCATAGAA
AACACTGCACATAGGTCCCAAGGTCTACTCATTTTTTGAAAAGCTTGGAA
AGAGAGAGAAAACAGGGTTATAAAATTTTGCAAAGGAGGTAACAAGAGAA
AGTTTGGAATGCTTAATAATAAACTTGGTTATAAATGATACATGTTTAAA
TTATCTGAGGTTTACTACTACATAAATTTCCTTAAAAAATGTAAAAAAAA
TTGTTGATAAATAGAGTCTTTGATTACTTTAACCATAGAAATAATAATTA
TTAGTATGAAATTTGACAAGAAATACTTATCTTGAAGTATTATTGTGATT
TAAAGCATTTAGTTTAAATATATTTTGGATAGGGAAATTCTACTACGAGT
AAAAAAAAGAAGACTTCAAGCGAGATAACGACTAAATTTGCTAAAAGTAT
GTGAAATAATATTCTGGTTCGGAGATCTGAGATTGACTTTTTCTGAAATC
TAATACACCTTTTCGACCGTAGTCGCGCGGTAAGGCGCGTGCCACTCAAT
TATTTAATTGTCCCCCTAAACTCGATCCAATCCTTTTTTGCCACCTTTTT
TTATTGTCTATATATGCGAAAAAAAAGGATTGGGACGGTTTTAGTGGGAT
AAAGCGGACAAAAAAATGCCCGCACGGCAATTGGCGGTTACGGTCGAAAG
GGTGTATTTCAATCACCAATGAAACACCACACTATAAAAATAAAAACTTT
TCCAATTTGATATTCATTAACAGACAAATACATAAGGACAGAGTTTTTCG
ACAACCAGCGAAAATTCTATCACGTCTGATGTGTCGTTAAGAACAAACAA
ATCTTATGGATTTTTATTGGGCAGGTGAAGTCCAACACATCGTTTTTATC
GAGCCGTTCTTGAGAAAGTGGCCCTAAAATATGGTATGGTGTGGTATTTT
ATGTACAATTTAGCTTACTTTCAATTCTAACTATCCCAAATATCTGTTAA
AGTATTACTTCAACTATACCTACAACCTTTTCCAATGTTCTTGTATTCAA
GTTTTCTCATATTGTTTGTTTTTTCATCTTTCCATCTTTTTGGTTATATG
GAAGGATAAAGATCGTACAGGTCATTTAGCTAAAGGCTTCCCTACCGACA
TTGGCAATTCTTCATTCCCAACTATATGCTGTTATCCATATTTTACAATT
GTCTGAAAAAAAGGAATACCCATTCTCATGAATTCTCGGACGTTTCTTTT
GGATCAAAAGAATCGTTTAGTGTTCCAGAAATACTCAATTCTGNATTTTT
TTGAAATCTAATACACCTTTTCGACCGTAGTCGCGCGGTTAGGCGCGTGC
CACTTAATTATTTAATTGTCCCCCTAAACTCGATCCAATCCTTTTTTGAC
ACCTTTTTTTATTGTCTATATATGCGAAAAAAAAGGACTGGGACGGTTTT
AGTGGGATAAAGCGGACAAAAAAATGCCCGCACGGCAATTGGCGGTTACG
GTCGAAAGGGTGTATTTCAATCACCAATGAAACACCACACTATAAAAATA
AAAACTTTTCCAATTTGATATTCATTAACAGACAAATACATAAGGACAGA
GTTTTTCGACAACCAGCGAAAATTCTATCACGTCTGATGTGTCGTTAAGA
ACAAACAAATCTTATGGATTTTTATTGGGCAGGTGAAGTCCAACACATCG
TTTTTATCGAGCCGTTCTTGAGAAAGTGGCCCTAAAATATGGTATGGTGT
GGTATTTTATGTACAATTTAGCTTACTTTCAATTCTAACTATCCCAAATA
TCNACCCCAAAATATGGTATGATGTGGTATTTAATATGTACAATTTAGCT
TATTTTCAATTCTAACTAGCCCCAATATCTGTTAAAGTATTACTTCAACT
ATACCTACATCCTTTTCCAATGTTCTTGTATTCAAGTTTTCTCATATTGT
TTGTTTTTTTCATCTGTTCCATCTTTTTGGTTATATGGAAGATAAAGATC
GTACAGGTCATTTAGCTACAGGGTAAGCTTCTCTGCCGTCAGTGGCAGTG
TTTCATTCCTAACTATGCTGCCATCCATATTTTACAATTGTCCGAAAAAA
AGAAATACCCATTCTCATGAATTCTCGGACGTTTCTTTTGGATCAAAAGA
ATCGTTTAGTGTTCCAGAAATACTCAATTCTGATTGGTTGTCAAGCATTG
CCATGGGAACAAGATTGGTACCGACTTTCGATCCACGTGGACTGGACGAG
AACGCAGCATCGTCAAAAGAAGTTGAGCTTTGAAGACTAGCAGCACGTGA
CCTATCCACCAGCTTGCTCTTCTCTGAAAAGTGAGAAGTGAAAAAAACAA
ATTCTTGATATGAGTAAGTCATTTTTCTAGCGGAAACACCCGAAAAAACC
GGGATTTAACCTCTCTCTGTTACTAAAAATAGAAACACGGAGGTCAAAAT
CCGGCTTTTTTCGAGTGCTTCCGTTAAAAAATATGACGTCATCTTCAAGA
TTTAAAGTTCTGGCGAGAAAGTCGATTTTGGGCTATTTCTTTAACTTGAT
CGAATATTTCAATTTGGGAGGGGTTGGCAGACTTCCAGGCTATATTCTGA
GCCTTGTTGGACTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057698-exon-scaffold_297-1575043694:219327..221046 | TCONS_00057698-exon-scaffold_297-1575043694:219327..221046 | Clytia hemisphaerica | exon |
| TCONS_00057698-exon-scaffold_297-1575043694:217829..218440 | TCONS_00057698-exon-scaffold_297-1575043694:217829..218440 | Clytia hemisphaerica | exon |
| TCONS_00057698-exon-scaffold_297-1510915933:219327..221046 | TCONS_00057698-exon-scaffold_297-1510915933:219327..221046 | Clytia hemisphaerica | exon |
| TCONS_00057698-exon-scaffold_297-1510915933:217829..218440 | TCONS_00057698-exon-scaffold_297-1510915933:217829..218440 | Clytia hemisphaerica | exon |
| TCONS_00057698-exon-scaffold_297-1491911889:219327..221046 | TCONS_00057698-exon-scaffold_297-1491911889:219327..221046 | Clytia hemisphaerica | exon |
| TCONS_00057698-exon-scaffold_297-1491911889:217829..218440 | TCONS_00057698-exon-scaffold_297-1491911889:217829..218440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_297 | supercontig | scaffold_297:217829..221046 - |
Blast
The following BLAST results are available for this feature:
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