TCONS_00057700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057700
Unique NameTCONS_00057700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=transcript|length=311bp
NNTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAA
AGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTA
TCGATTGGTACCAAAACATGGTTTCACTAATGCCAAgttCAAGAAGGAAT
ACACACCAGTCAGTTTGGGTCGTCTCCAATACTTCATTGATAGCCAACGA
ATTGATCCTAACGAAAAAATCACCATAGAAACGTTGTGGAGATCTGGTGC
CGTTTCTCATAAAATTAAAGATGGTGTTCGAATCCTCGGAACAGTGAGTT
TTAACGATTGA
Run BLAST on NCBI

protein sequence of TCONS_00057700-protein

>TCONS_00057700-protein ID=TCONS_00057700-protein|Name=TCONS_00057700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
SGRGKTSGKGHKGQGQRGTMPRIGFEGGQTPFYRLVPKHGFTNAKFKKEY
TPVSLGRLQYFIDSQRIDPNEKITIETLWRSGAVSHKIKDGVRILGTVSF
ND
Run BLAST on NCBI

transcript from alignment at scaffold_297:232354..234161-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at scaffold_297:232354..234161- (Clytia hemisphaerica)
NNTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAA AGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTA TCGATTGGTACCAAAACATGGTTTCACTAATGCCAAGTAGGTAGTGTTGA ATTTAAGGAGTACCATATAAAAATGGCTACTTTCAGGGATTTCCATTAGA AAATTGTTCACGAGAAGTTAAATTGTTTGATTGTATTTTTTAAAAGCGAT AGAATTTGATTCCCCGCCACAACACATGTTTTATGTTTTTTTATCCCCAT AGCCTGGAAGCATTGGTTTTCCTTATTGTTGTTTACAACTTGGACTTTAG TTTAGAAGTTGGTTATTTTTGCTCACAATTTCATTATGTGATTAAATAAT GAACAATTGACAGACTGTTTTTTATTTGGTTGTATTACGTAGTTCGAAAT CAGACCATGATTCCTACAAGGGTTGCAAAATTAAAGACTGAAGTTAAATC ACGCTTTTACTCGAAATTTTTACGTGCTTGCTACATGACCTTCATTTCTG GTTGGTTGGAATTTATCAACACTAATAAAGTTATGAACTGTAAGTTGTAA AACAAGTAACATGAGAATAAAATCACGTGAACTATTTCGACTAATCATAT GTTTTGACTGCACTGCTATAATTTTGCAACCCGTGTATTGAGGTCAAAGT AGGGCGAGATGAACTCTCAAATTAGAATTTTCTAAATTCAGGTAGGCCTC GATAGATACACTTCCGATGGGTAATTTGTTCTTTAGAGGGTTAGCAGAAG CCTATGGTTTCATTAGAAAAAATCCATTATTATTGCTTTATGCACCATTG CAATGTCTTCTACGGACCCAACAGCTGATTGGTTGAAAGTGACGTATTGA CTGATTTTACGTCACTTACAACCAATCAGCTATTGGGTCCGTGATGTAAT ATCAGAAGACATTGCAATGGTGCATATCATGAATTGGTTTATGTACTTTG TAATAAAGTTGTTATATAAATTGTCAGATTTATGCAACATATCGCGTGCT TTCTTTTAAAAGAAATGGATTCTTGACAATTTCCCTTTATGTAGAATCAT ATTACAAAATGGCTTGCCCTGGCGTGCAACGTGTTCTTATTTTTCAACAT TTTGATGGTTTTGATGCTTTCGTGTGGAGATTTTATTTATTAAGGAGACT TTCTCGTTTTTAGTGGTTATTTTCTTTCATATTCTAAAAAACTCAAAAGA AACTTGGGACGTTTGATGGTCAAAATTATTCTTACTAGAAAGAAGATGTG AAATGCTACATTTTCGATTTGGTCAACTATATCACTGAGCTTTAATGACT CAATCGAGCTTTTTGATATTTTTATTTCTCGTTATCTACCTCGAAATTTT GAATGTCTTGAAAAGTGAATAGAAACAACACGGCGGGCTGGTCAGCTTTA AACTACAGCCCCTTCTATTGACAAGCAAAATACACGTGTTTTGTCTTCAG ACTTTAATTTTGCAACCTGTCTAATTGCGAGTTTTGTCTAAACACATTGT CACATGAAATATGTTGGCAGTTCGCCTCTATTGTATGTAAAGAAATATTA TGTTAATGATGTTATATGTTTCAAATATTTTAGGTTCAAGAAGGAATACA CACCAGTCAGTTTGGGTCGTCTCCAATACTTCATTGATAGCCAACGAATT GATCCTAACGAAAAAATCACCATAGAAACGTTGTGGAGATCTGGTGCCGT TTCTCATAAAATTAAAGATGGTGTTCGAATCCTCGGAACAGTGAGTTTTA ACGATTGA

Coding sequence (CDS) from alignment at scaffold_297:232354..234161-

>TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_297:232354..234161- (Clytia hemisphaerica)
GTTCAAGAAGGAATACACACCAGTCAGTTTGGGTCGTCTCCAATACTTCA
TTGATAGCCAACGAATTGATCCTAACGAAAAAATCACCATAGAAACGTTG
TGGAGATCTGGTGCCGTTTCTCATAAAATTAAAGATGGTGTTCGAATCCT
CGGAACAGTGAGTTTTAACGATTGATCAGGGCGTGGCAAGACAAGTGGTA
AAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGAATTGGTTTC
GAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACATGGTTTCAC
TAATGCCAAGTTCAAGAAGGAATACACACCAGTCAGTTTGGGTCGTCTCC
AATACTTCATTGATAGCCAACGAATTGATCCTAACGAAAAAATCACCATA
GAAACGTTGTGGAGATCTGGTGCCGTTTCTCATAAAATTAAAGATGGTGT
TCGAATCCTCGGAACAGTGAGTTTTAACGATTGATCAGGGCGTGGCAAGA
CAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGA
ATTGGTTTCGAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACA
TGGTTTCACTAATGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036381XLOC_036381Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057700-proteinTCONS_00057700-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057700-exon-scaffold_297-1575043694:234026..234161TCONS_00057700-exon-scaffold_297-1575043694:234026..234161Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1575043694:232354..232528TCONS_00057700-exon-scaffold_297-1575043694:232354..232528Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1510915933:234026..234161TCONS_00057700-exon-scaffold_297-1510915933:234026..234161Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1510915933:232354..232528TCONS_00057700-exon-scaffold_297-1510915933:232354..232528Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1491911889:234026..234161TCONS_00057700-exon-scaffold_297-1491911889:234026..234161Clytia hemisphaericaexon
TCONS_00057700-exon-scaffold_297-1491911889:232354..232528TCONS_00057700-exon-scaffold_297-1491911889:232354..232528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:232354..234161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (12.936 tpm) - - (64.2079 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.9777 40.686 54.7201 60.0825 29.5392 18.5256 43.8067 40.5928 31.0569 36.6544 24.6578 23.6189 22.1987 23.2937 31.786 32.2044 64.2079 57.7853 12.936 14.3101 25.8846 29.0225 59.0005 48.9284 34.7166 24.9869 27.1747 25.44 40.1342 28.3088
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_L18e/L15P
IPR005749Ribosomal_L15_bac-type
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
NNTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACATGGTTTCACTAATGCCAAgttCAAGAAGGAATACACACCAGTCAGTTTGGGTCGTCTCCAATACTTCATTGATAGCCAACGAATTGATCCTAACGAAAAAATCACCATAGAAACGTTGTGGAGATCTGGTGCCGTTTCTCATAAAATTAAAGATGGTGTTCGAATCCTCGGAACAGTGAGTTTTAACGATTGA50100150200250300Expect = 9.20e-21 / Id = 56.52SequenceRM15
Match NameE-valueIdentityDescription
RM159.198e-2156.5239S ribosomal protein L15, mitochondrial OS=Homo s... [more]
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