Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=transcript|length=311bp NNTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAA AGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTA TCGATTGGTACCAAAACATGGTTTCACTAATGCCAAgttCAAGAAGGAAT ACACACCAGTCAGTTTGGGTCGTCTCCAATACTTCATTGATAGCCAACGA ATTGATCCTAACGAAAAAATCACCATAGAAACGTTGTGGAGATCTGGTGC CGTTTCTCATAAAATTAAAGATGGTGTTCGAATCCTCGGAACAGTGAGTT TTAACGATTGA Run BLAST on NCBI protein sequence of TCONS_00057700-protein >TCONS_00057700-protein ID=TCONS_00057700-protein|Name=TCONS_00057700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
SGRGKTSGKGHKGQGQRGTMPRIGFEGGQTPFYRLVPKHGFTNAKFKKEY TPVSLGRLQYFIDSQRIDPNEKITIETLWRSGAVSHKIKDGVRILGTVSF ND Run BLAST on NCBI transcript from alignment at scaffold_297:232354..234161- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at scaffold_297:232354..234161- (Clytia hemisphaerica) NNTCAGGGCGTGGCAAGACAAGTGGTAAAGGCCACAAAGGACAAGGTCAA
AGAGGTACAATGCCAAGAATTGGTTTCGAAGGAGGACAAACACCTTTTTA
TCGATTGGTACCAAAACATGGTTTCACTAATGCCAAGTAGGTAGTGTTGA
ATTTAAGGAGTACCATATAAAAATGGCTACTTTCAGGGATTTCCATTAGA
AAATTGTTCACGAGAAGTTAAATTGTTTGATTGTATTTTTTAAAAGCGAT
AGAATTTGATTCCCCGCCACAACACATGTTTTATGTTTTTTTATCCCCAT
AGCCTGGAAGCATTGGTTTTCCTTATTGTTGTTTACAACTTGGACTTTAG
TTTAGAAGTTGGTTATTTTTGCTCACAATTTCATTATGTGATTAAATAAT
GAACAATTGACAGACTGTTTTTTATTTGGTTGTATTACGTAGTTCGAAAT
CAGACCATGATTCCTACAAGGGTTGCAAAATTAAAGACTGAAGTTAAATC
ACGCTTTTACTCGAAATTTTTACGTGCTTGCTACATGACCTTCATTTCTG
GTTGGTTGGAATTTATCAACACTAATAAAGTTATGAACTGTAAGTTGTAA
AACAAGTAACATGAGAATAAAATCACGTGAACTATTTCGACTAATCATAT
GTTTTGACTGCACTGCTATAATTTTGCAACCCGTGTATTGAGGTCAAAGT
AGGGCGAGATGAACTCTCAAATTAGAATTTTCTAAATTCAGGTAGGCCTC
GATAGATACACTTCCGATGGGTAATTTGTTCTTTAGAGGGTTAGCAGAAG
CCTATGGTTTCATTAGAAAAAATCCATTATTATTGCTTTATGCACCATTG
CAATGTCTTCTACGGACCCAACAGCTGATTGGTTGAAAGTGACGTATTGA
CTGATTTTACGTCACTTACAACCAATCAGCTATTGGGTCCGTGATGTAAT
ATCAGAAGACATTGCAATGGTGCATATCATGAATTGGTTTATGTACTTTG
TAATAAAGTTGTTATATAAATTGTCAGATTTATGCAACATATCGCGTGCT
TTCTTTTAAAAGAAATGGATTCTTGACAATTTCCCTTTATGTAGAATCAT
ATTACAAAATGGCTTGCCCTGGCGTGCAACGTGTTCTTATTTTTCAACAT
TTTGATGGTTTTGATGCTTTCGTGTGGAGATTTTATTTATTAAGGAGACT
TTCTCGTTTTTAGTGGTTATTTTCTTTCATATTCTAAAAAACTCAAAAGA
AACTTGGGACGTTTGATGGTCAAAATTATTCTTACTAGAAAGAAGATGTG
AAATGCTACATTTTCGATTTGGTCAACTATATCACTGAGCTTTAATGACT
CAATCGAGCTTTTTGATATTTTTATTTCTCGTTATCTACCTCGAAATTTT
GAATGTCTTGAAAAGTGAATAGAAACAACACGGCGGGCTGGTCAGCTTTA
AACTACAGCCCCTTCTATTGACAAGCAAAATACACGTGTTTTGTCTTCAG
ACTTTAATTTTGCAACCTGTCTAATTGCGAGTTTTGTCTAAACACATTGT
CACATGAAATATGTTGGCAGTTCGCCTCTATTGTATGTAAAGAAATATTA
TGTTAATGATGTTATATGTTTCAAATATTTTAGGTTCAAGAAGGAATACA
CACCAGTCAGTTTGGGTCGTCTCCAATACTTCATTGATAGCCAACGAATT
GATCCTAACGAAAAAATCACCATAGAAACGTTGTGGAGATCTGGTGCCGT
TTCTCATAAAATTAAAGATGGTGTTCGAATCCTCGGAACAGTGAGTTTTA
ACGATTGA Coding sequence (CDS) from alignment at scaffold_297:232354..234161- >TCONS_00057700 ID=TCONS_00057700|Name=TCONS_00057700|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_297:232354..234161- (Clytia hemisphaerica) GTTCAAGAAGGAATACACACCAGTCAGTTTGGGTCGTCTCCAATACTTCA TTGATAGCCAACGAATTGATCCTAACGAAAAAATCACCATAGAAACGTTG TGGAGATCTGGTGCCGTTTCTCATAAAATTAAAGATGGTGTTCGAATCCT CGGAACAGTGAGTTTTAACGATTGATCAGGGCGTGGCAAGACAAGTGGTA AAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGAATTGGTTTC GAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACATGGTTTCAC TAATGCCAAGTTCAAGAAGGAATACACACCAGTCAGTTTGGGTCGTCTCC AATACTTCATTGATAGCCAACGAATTGATCCTAACGAAAAAATCACCATA GAAACGTTGTGGAGATCTGGTGCCGTTTCTCATAAAATTAAAGATGGTGT TCGAATCCTCGGAACAGTGAGTTTTAACGATTGATCAGGGCGTGGCAAGA CAAGTGGTAAAGGCCACAAAGGACAAGGTCAAAGAGGTACAATGCCAAGA ATTGGTTTCGAAGGAGGACAAACACCTTTTTATCGATTGGTACCAAAACA TGGTTTCACTAATGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057700-exon-scaffold_297-1575043694:234026..234161 | TCONS_00057700-exon-scaffold_297-1575043694:234026..234161 | Clytia hemisphaerica | exon |
TCONS_00057700-exon-scaffold_297-1575043694:232354..232528 | TCONS_00057700-exon-scaffold_297-1575043694:232354..232528 | Clytia hemisphaerica | exon |
TCONS_00057700-exon-scaffold_297-1510915933:234026..234161 | TCONS_00057700-exon-scaffold_297-1510915933:234026..234161 | Clytia hemisphaerica | exon |
TCONS_00057700-exon-scaffold_297-1510915933:232354..232528 | TCONS_00057700-exon-scaffold_297-1510915933:232354..232528 | Clytia hemisphaerica | exon |
TCONS_00057700-exon-scaffold_297-1491911889:234026..234161 | TCONS_00057700-exon-scaffold_297-1491911889:234026..234161 | Clytia hemisphaerica | exon |
TCONS_00057700-exon-scaffold_297-1491911889:232354..232528 | TCONS_00057700-exon-scaffold_297-1491911889:232354..232528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_297 | supercontig | scaffold_297:232354..234161 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR021131 | Ribosomal_L18e/L15P |
IPR005749 | Ribosomal_L15_bac-type |
Vocabulary: Biological Process
Term | Definition |
GO:0006412 | translation |
Vocabulary: Molecular Function
Term | Definition |
GO:0003735 | structural constituent of ribosome |
Vocabulary: Cellular Component
Term | Definition |
GO:0015934 | large ribosomal subunit |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006412 |
translation |
cellular_component |
GO:0015934 |
large ribosomal subunit |
molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00057700 vs. Swiss-Prot (Human)
Match: RM15 (39S ribosomal protein L15, mitochondrial OS=Homo sapiens GN=MRPL15 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 9.198e-21 Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 3 Query: 33 HKGQGQRGTMPRIGFEGGQTPFYRLVPKHGFTNA-KFKKEYTPVSLGRLQYFIDSQRIDPNEKITIETL 236
HKG+ QRGT PR+GFEGGQTPFY +PK+GF F+++Y P+SL RLQY ID R+DP++ I + L
Sbjct: 53 HKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQL 121
The following BLAST results are available for this feature:
BLAST of TCONS_00057700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 ( blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match Name | E-value | Identity | Description | |
RM15 | 9.198e-21 | 56.52 | 39S ribosomal protein L15, mitochondrial OS=Homo s... | [more] |
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