TCONS_00057700-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057700-protein
Unique NameTCONS_00057700-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length102

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057700-protein ID=TCONS_00057700-protein|Name=TCONS_00057700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
SGRGKTSGKGHKGQGQRGTMPRIGFEGGQTPFYRLVPKHGFTNAKFKKEY
TPVSLGRLQYFIDSQRIDPNEKITIETLWRSGAVSHKIKDGVRILGTVSF
ND
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036381XLOC_036381Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057700TCONS_00057700Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_L18e/L15P
IPR005749Ribosomal_L15_bac-type
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF00828Ribosomal_L27Acoord: 3..100
e-value: 3.1E-25
score: 89.1
IPR021131Ribosomal protein L18e/L15PSUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 1..97
IPR005749Ribosomal protein L15, bacterial-typeTIGRFAMTIGR01071TIGR01071coord: 1..100
e-value: 1.2E-27
score: 94.4
NoneNo IPR availableGENE3D3.100.10.10coord: 18..101
e-value: 2.6E-16
score: 59.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Blast
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BLAST of TCONS_00057700-protein vs. Swiss-Prot (Human)
Match: RM15 (39S ribosomal protein L15, mitochondrial OS=Homo sapiens GN=MRPL15 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.533e-21
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0 
Query:   11 HKGQGQRGTMPRIGFEGGQTPFYRLVPKHGFTNA-KFKKEYTPVSLGRLQYFIDSQRIDPNEKITIETL 78
            HKG+ QRGT PR+GFEGGQTPFY  +PK+GF     F+++Y P+SL RLQY ID  R+DP++ I +  L
Sbjct:   53 HKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRRQYKPLSLNRLQYLIDLGRVDPSQPIDLTQL 121
The following BLAST results are available for this feature:
BLAST of TCONS_00057700-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM151.533e-2156.5239S ribosomal protein L15, mitochondrial OS=Homo s... [more]
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