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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057701 ID=TCONS_00057701|Name=TCONS_00057701|organism=Clytia hemisphaerica|type=transcript|length=1827bp
CAAATCCACACTCTACCTTTTTGTGACAGTTTACGAAACGCACATGGAAA
GCTCTTCAATCGATGCCTAAACCTCATAGGAAGAGAATACCTCgaaggag
aagaaaaacaaactgaATGGTTAATCGAAACATCTCTTTTACTGcctaat
ttttttgcttgtgtaCGTGACGTTGAAGATTGAAGGTTGAAGATCACCAC
GTTGCGGGAAGAAACTTAACGATAAAACGAGTTTTTAAAGCTCTCTTTGA
ATTTTAACTGATCtctctttttcgtttttcttacAGAGGAAACTAGCACA
TCTGGAAAGTCTCGTCAGCAAACTTCGTAAGGAAAAAGCTGAGAAAGAGA
AAACCTTCTCTGCTTTGAAAGACGAAAAGAAGCCCGGCTCGTTCACACCC
TCGCAAGCAGACGACAATAATACATCCGCCACACAACCGCCTTCTCTTAA
TAACAACCAACGATTGAAGAACGGGTCAAAACCATCTAGTCGAACCAcCT
CTCCTACGGAAAATCGAGCAGAGAGTCGAACTTCGAACAATTCTTCAGCT
CTTAAGAATGGAAACGATTCAAGTGACAATAAAAAACCGCGAAGACCTCG
ACCACGCGACGCGTCTGAAAGTTCCCAATCTTCAGCTCATTCTGACTCTG
CTGACGAAACAAACAAGCGAAATTCCAATAAAAAGCAACGCAAAGACGAG
TCCCGATCACGAAAACGAAGGTCACCGAGTTCAGATTCCGACTACGATAG
ACGACCGAAAAACCGCCGAAGTTCACACAGTCCCGATGATCGCCGTAGCA
AATTAAAACCAAAAGACACTAACCGAGACAGGGTGAGAGATACAAACGGG
TATAGTGATAAAGATAAGAAACACAGGGGCACTAAAAAGCGCTCGAGAAG
TCGTTCGCCCGTTCGCTACCGATCATTGTCTCCTCAATCACGTAAAACCG
ATAAAAGTCGTCGTGACCGAGAACGAGAAAAAGAAAGATCGAAAGATAAA
TACCGAGGTCGTCGATGAATCTTTTAACATAAAACACGTGTATCCACGAA
ATATATTTAGTTTTTGGTTAAATGTCTGTGTAGAGTATTTGCATGAGTCC
AAAACCTTCTGGTGTCACTGTTGAAATTTAAATTCGCGAATATAATATTA
AAATAATATAAAGGCCAGGGCAAACCAGTCCAACATTTCATCCAAAATGA
TTTTCCAATGTTGGATGAAATATTTGATAGAAAGACTTGCGTTGGATGAA
ACAAAAATCAAGGCCGGGGCAAACCGACCCAACATTTCATCCACGAAATA
TTACACAATTCAATGAGAGAGCTTCTTTGATCTCGCCGCAAATGTTGGAT
CAAACTTCATCCAACACCGTCCAACACGAGTATTTGCTTCTTTTTCATTT
TTTTCCAAAAATTTAAATTGACGCAAACCGGTCCAACATTTCATCCAACA
TCAGAAAAAAGGCATGAATTAACAAGAAAAATTGAATATTGCATCCCTTG
CGAATTCTCCATTATAAAGTCGAAGCTACCTTTTTGTTTTCAAATAACTT
TTGTTAATTTAGGGCTCTTTTGAAGAAAAAAAAGAAAAATATTGTGGAAA
CAAAATTTGAATTAGCCAGCCATAGACTGCGGATTCGTGTATCAAACCAT
GCAGACCATGATAAGATTGATATTGCGTTTTTAACTTTGTATTTAGAGTG
TAGGTGATTTTTTTAAAGGTAATCTTCGATCAATTGTGCGTATTTCTGTT
GATGATCGATTTTTTTTTGTTCTAGATTTTTATAAATAAAAGAATTGACA
TTTTTAACATAACATTTTTTAGTTTCG Run BLAST on NCBI transcript from alignment at scaffold_297:244163..246962- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057701 ID=TCONS_00057701|Name=TCONS_00057701|organism=Clytia hemisphaerica|type=transcript|length=2800bp|location=Sequence derived from alignment at scaffold_297:244163..246962- (Clytia hemisphaerica)
CAAATCCACACTCTACCTTTTTGTGACAGTTTACGAAACGCACATGGAAA
GCTCTTCAATCGATGCCTAAACCTCATAGGAAGAGAATACCTCGAAGGAG
AAGAAAAACAAACTGAATGGTTAATCGAAACATCTCTTTTACTGCCTAAT
TTTTTTGCTTGTGTACGTGACGTTGAAGATTGAAGGTTGAAGATCACCAC
GTTGCGGGAAGAAACTTAACGATAAAACGAGTTTTTAAAGCTCTCTTTGA
ATTTTAACTGATCTCTCTTTTTCGTTTTTCTTACAGAGGAAACTAGCACA
TCTGGAAAGTCTCGTCAGCAAACTTCGTAAGGAAAAAGCTGAGAAAGAGA
AAACCTTCTCTGCTTTGAAAGACGAAAAGAAGCCCGGCTCGTTCACACCC
TCGCAAGCAGACGACAATAATACATCCGCCACACAACCGCCTTCTCTTAA
TAACAACCAACGATTGAAGAACGGGTCAAAACCATCTAGTCGAACCAGTG
AGTTTCGTAGTTCTTGAAATAATCCCTAAAATAACCCTTCCTCGTTATTA
ACGTAAGTAATTCGTAATAGTTCGAAAAATAGACTAGAATAAAAAACTGT
TGCCTCTGATTGATTAAATATTAACGAAAATAACAACGAAAAAAGTTGTT
ACGAACTTCCTCAATTATGTTATGATCTTGACGTACTTTTCTTCTCAGCT
ATATTTATTTATAACGCACCTTACATTTTCCCATAATAAGTACAACTAAA
TAACTCCCGCGTATACACGTTTTTTCATGAAACTATTTTTTACAAAGCAG
GCTCAATGTTTCTTAAGAAATCGGCCTTTTGAGCCTTAAATGTTTATTAC
ATGTTTCCTGATGTTTCTAAACTTTTTGACATAATCAGCCTATTTTTCAT
GCAAAGAAAAAAAACATTTGTTTCGATTGGAAGGTTCTTAAAAAAACGAA
TTAAAAAATGTTATTTTATCATTCTCAGCCTCAGCATGTTTCTTAGATGT
TTCTTAGTTTTTAGGCATTCTGAGCCTCATTTTTCTTAAAAGTGTGTTTC
TTTTAAAAAAACGTGTACCTCGGTTTGCCCTGGATTCAATGAAATATGAA
CAAAACCATGTAGAACCACCAAGATTTAAAGGAAGCTTGCAAGGATTCTG
ATGCCATATTTAAAAATTTGATTTTTTTTTATTGTAGCCTCTCCTACGGA
AAATCGAGCAGAGAGTCGAACTTCGAACAATTCTTCAGCTCTTAAGAATG
GAAACGATTCAAGGTATGTATCAATTTAATATTGTTCCTTCTCATAAGTC
AATACAAACGAAATAACTCTTACAGCAAAACCTGGTATATCGTCTAACTT
TCTACTCTTGATGACTTGTAACAAAAGTGACTTCAAAAATGGACTCGATG
TTTCAGCGGTAGCGATCCGCACTCAAATTATTGGAACCCTTTCGGGTAGT
GAGATCAAACCCATCGCCAAAATCAATGTCTTAGTCAATACTCAACTGAT
TTCATGCCAGATCAAAATAAACTCTTCAAATAATTACCTTTTTCAGTGAC
AATAAAAAACCGCGAAGACCTCGACCACGCGACGCGTCTGAAAGTTCCCA
ATCTTCAGCTCATTCTGACTCTGCTGACGAAACAAACAAGCGAAATTCCA
ATAAAAAGCAACGCAAAGACGAGTCCCGATCACGAAAACGAAGGTCACCG
AGTTCAGATTCCGACTACGATAGACGACCGAAAAACCGCCGAAGTTCACA
CAGTCCCGATGATCGCCGTAGCAAATTAAAACCAAAAGACACTAACCGAG
ACAGGGTGAGAGATACAAACGGGTATAGTGATAAAGATAAGAAACACAGG
GGCACTAAAAAGCGCTCGAGAAGTCGTTCGCCCGTTCGCTACCGATCATT
GTCTCCTCAATCACGTAAAACCGATAAAAGTCGTCGTGACCGAGAACGAG
AAAAAGAAAGATCGAAAGATAAATACCGAGGTCGTCGATGAATCTTTTAA
CATAAAACACGTGTATCCACGAAATATATTTAGTTTTTGGTTAAATGTCT
GTGTAGAGTATTTGCATGAGTCCAAAACCTTCTGGTGTCACTGTTGAAAT
TTAAATTCGCGAATATAATATTAAAATAATATAAAGGCCAGGGCAAACCA
GTCCAACATTTCATCCAAAATGATTTTCCAATGTTGGATGAAATATTTGA
TAGAAAGACTTGCGTTGGATGAAACAAAAATCAAGGCCGGGGCAAACCGA
CCCAACATTTCATCCACGAAATATTACACAATTCAATGAGAGAGCTTCTT
TGATCTCGCCGCAAATGTTGGATCAAACTTCATCCAACACCGTCCAACAC
GAGTATTTGCTTCTTTTTCATTTTTTTCCAAAAATTTAAATTGACGCAAA
CCGGTCCAACATTTCATCCAACATCAGAAAAAAGGCATGAATTAACAAGA
AAAATTGAATATTGCATCCCTTGCGAATTCTCCATTATAAAGTCGAAGCT
ACCTTTTTGTTTTCAAATAACTTTTGTTAATTTAGGGCTCTTTTGAAGAA
AAAAAAGAAAAATATTGTGGAAACAAAATTTGAATTAGCCAGCCATAGAC
TGCGGATTCGTGTATCAAACCATGCAGACCATGATAAGATTGATATTGCG
TTTTTAACTTTGTATTTAGAGTGTAGGTGATTTTTTTAAAGGTAATCTTC
GATCAATTGTGCGTATTTCTGTTGATGATCGATTTTTTTTTGTTCTAGAT
TTTTATAAATAAAAGAATTGACATTTTTAACATAACATTTTTTAGTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057701-exon-scaffold_297-1575043694:246466..246962 | TCONS_00057701-exon-scaffold_297-1575043694:246466..246962 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1575043694:245700..245775 | TCONS_00057701-exon-scaffold_297-1575043694:245700..245775 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1575043694:244163..245416 | TCONS_00057701-exon-scaffold_297-1575043694:244163..245416 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1510915933:246466..246962 | TCONS_00057701-exon-scaffold_297-1510915933:246466..246962 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1510915933:245700..245775 | TCONS_00057701-exon-scaffold_297-1510915933:245700..245775 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1510915933:244163..245416 | TCONS_00057701-exon-scaffold_297-1510915933:244163..245416 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1491911889:246466..246962 | TCONS_00057701-exon-scaffold_297-1491911889:246466..246962 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1491911889:245700..245775 | TCONS_00057701-exon-scaffold_297-1491911889:245700..245775 | Clytia hemisphaerica | exon |
| TCONS_00057701-exon-scaffold_297-1491911889:244163..245416 | TCONS_00057701-exon-scaffold_297-1491911889:244163..245416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_297 | supercontig | scaffold_297:244163..246962 - |
Blast
The following BLAST results are available for this feature:
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