TCONS_00057711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057711
Unique NameTCONS_00057711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057711 ID=TCONS_00057711|Name=TCONS_00057711|organism=Clytia hemisphaerica|type=transcript|length=528bp
aaacaatcaaaatcagccatatttgttttgattttttattttgacatgtg
acatttgttttgattttgtatcccgctgcatacggtttgtttacaaattc
caTTAGTACTTTTATGCCCCTTTAAGGTCTAACAGAGCGCTTGTACGCCT
ACCCTTTTAAGGACGGATGAGTGACGGTGAAAAATGCTGATCATCGCCGT
CCTCAGTGAGCCAGCATCTAGACATATCAAAAAATAACCGTCTCCGCTGT
TGAAAATTACAATATAGAATTGATCGCGTAGTGCAGAGGTAGAGCATTCG
GCTACTTTGCGCAAGGTTGTTAGTTCAATCCCCAACAAGGTCATACAAAG
GACCTTTtatatctccttaactcgaacagaaCAATGCTCCCTTCAGGTGA
AAAACCCTTGTAAAGAAATCTATAAAACTCATTTTACATAACTTGAACAA
GACTCTTCGTGCTAAATTTACGATTGCAGTCGAGAGCGACCcaaaggctc
ccttttctccAGCTGTCTAGTGGAGGCC
Run BLAST on NCBI

transcript from alignment at scaffold_297:157655..158182

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057711 ID=TCONS_00057711|Name=TCONS_00057711|organism=Clytia hemisphaerica|type=transcript|length=528bp|location=Sequence derived from alignment at scaffold_297:157655..158182 (Clytia hemisphaerica)
GGCCTCCACTAGACAGCTggagaaaagggagcctttgGGTCGCTCTCGAC
TGCAATCGTAAATTTAGCACGAAGAGTCTTGTTCAAGTTATGTAAAATGA
GTTTTATAGATTTCTTTACAAGGGTTTTTCACCTGAAGGGAGCATTGttc
tgttcgagttaaggagatataAAAGGTCCTTTGTATGACCTTGTTGGGGA
TTGAACTAACAACCTTGCGCAAAGTAGCCGAATGCTCTACCTCTGCACTA
CGCGATCAATTCTATATTGTAATTTTCAACAGCGGAGACGGTTATTTTTT
GATATGTCTAGATGCTGGCTCACTGAGGACGGCGATGATCAGCATTTTTC
ACCGTCACTCATCCGTCCTTAAAAGGGTAGGCGTACAAGCGCTCTGTTAG
ACCTTAAAGGGGCATAAAAGTACTAAtggaatttgtaaacaaaccgtatg
cagcgggatacaaaatcaaaacaaatgtcacatgtcaaaataaaaaatca
aaacaaatatggctgattttgattgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036392XLOC_036392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057711-exon-scaffold_297-1491911889:157655..158182TCONS_00057711-exon-scaffold_297-1491911889:157655..158182Clytia hemisphaericaexon
TCONS_00057711-exon-scaffold_297-1510915933:157655..158182TCONS_00057711-exon-scaffold_297-1510915933:157655..158182Clytia hemisphaericaexon
TCONS_00057711-exon-scaffold_297-1575043694:157655..158182TCONS_00057711-exon-scaffold_297-1575043694:157655..158182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_297supercontigscaffold_297:157655..158182 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.469861	0.227987	1.4276	1.97657	0.15	0.118526	0.145318	0.136721	0	0	0	0	0	0	0	0	0	0	0	0	0.110565	0	0.130139	0	0	0	0	0	0.128421	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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