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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057727 ID=TCONS_00057727|Name=TCONS_00057727|organism=Clytia hemisphaerica|type=transcript|length=2764bpRun BLAST on NCBI transcript from alignment at scaffold_298:38287..71550+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057727 ID=TCONS_00057727|Name=TCONS_00057727|organism=Clytia hemisphaerica|type=transcript|length=33264bp|location=Sequence derived from alignment at scaffold_298:38287..71550+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057727 vs. Swiss-Prot (Human)
Match: ZNF84 (Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2) HSP 1 Score: 311.997 bits (798), Expect = 9.347e-94 Identity = 180/378 (47.62%), Postives = 238/378 (62.96%), Query Frame = 1
Query: 670 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKAFECQECGKTFGQKTNLTSHQRNVHQGITAFKCQECGKSFGQKTNLTSHQRTVHQGIKAFECQECAKCFGQKTNLSSHQRTVHQGIK 1803
KP+ C++CG+ F Q+S LT H+ H + Y C +C K ++ K+ I H + H +P+ C+EC +AFS ++ L HQR +H G KPFEC+ECGK F+ K QL +HHR H KP+ C +C K F KS L RH+ T+H G K +EC EC K+F +S L+ HQRT H G P C +C K+F+ KS L HQ T H G +PF C +CG F RK LVRH R H G K +EC ECGK F EK +LT+HQ +H G P+ C EC K+F KS L+ HQRT H G K +EC ECGK FG+K++L +HQR H G ++C++C K+F QK+ L +HQR +H G K +EC C K F +K+ L H RT H G K
Sbjct: 261 KPYNCSQCGKAFSQKSQLTSHQRTHTGEK-PYECGECGKAFSRKSHLISHWR-THTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQ-RIHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQR-THTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRHLRT-HTGEK 625 HSP 2 Score: 38.5058 bits (88), Expect = 9.347e-94 Identity = 19/50 (38.00%), Postives = 29/50 (58.00%), Query Frame = 3
Query: 1800 KGVNCRKCGKSFRQKTTITSHKNLTSH*STVHRGIKSFKCQECGKYFLEK 1949
K C +C K+FR+K+++ +H+ +H G K F+C ECGK F K
Sbjct: 625 KPYECNECRKAFREKSSLINHQR-------IHTGEKPFECSECGKAFSRK 667 HSP 3 Score: 35.4242 bits (80), Expect = 9.347e-94 Identity = 24/59 (40.68%), Postives = 30/59 (50.85%), Query Frame = 2
Query: 1937 FFRKRN*TSHQRFAHQGIRAFKCPEFFKCFVEKRNLTFHQTIVHEVVKASKCQDCGKYF 2113
F RK + HQR H G + + C E K F +K L HQ I H K +C +CGK F
Sbjct: 664 FSRKSHLIPHQR-THTGEKPYGCSECRKAFSQKSQLVNHQRI-HTGEKPYRCIECGKAF 720 HSP 4 Score: 300.442 bits (768), Expect = 2.398e-88 Identity = 175/378 (46.30%), Postives = 235/378 (62.17%), Query Frame = 1
Query: 670 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKAFECQECGKTFGQKTNLTSHQRNVHQGITAFKCQECGKSFGQKTNLTSHQRTVHQGIKAFECQECAKCFGQKTNLSSHQRTVHQGIK 1803
KP+ CNECG F ++S L H+ IH + + C++C K ++ K+ + HH+ H +PF C +C KAF ++ L HQ T+H G KP+EC EC K F E+ L +H R H KP+ C +CGK F+ KS+L H++T H G K F C +C K+F+ KS LVRHQRT H G P+EC EC K+F+ K L HQR IH G +P+ C ECG F +K L+ H R H G K +EC ECGK F EK +L +HQ T H G P+EC++C K+F+ KS L HQR +H G K +EC C K F +K+ L H R H G ++C EC K+F +K++L +HQR +H G K FEC EC K F +K++L HQRT H G K
Sbjct: 317 KPYGCNECGRAFSEKSNLINHQRIHTGEK-PFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQR-THTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRHLR-THTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEK 681 HSP 5 Score: 298.13 bits (762), Expect = 1.718e-87 Identity = 172/372 (46.24%), Postives = 225/372 (60.48%), Query Frame = 1
Query: 670 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQECGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKAFECQECGKTFGQKTNLTSHQRNVHQGITAFKCQECGKSFGQKTNLTSHQRTVHQGIKAFECQECAKCFGQKTNLSSHQRT 1785
KPF C++C + F+++S L +H+ IH + Y C +C K + +++ I H + H +P C +C KAFS +++L HQ T H G KPF C +CGK F+ K QL H R H KPY+C ECGK F+ K L H+ +H G K + C EC K+F KS L+ HQRT H G P+EC EC K+F KS LA HQRT H G +P++C++C F +K L H RI H G K +EC C K F EK L H L H G P+EC EC K+F KS L+ HQR +H G K FEC ECGK F +K++L HQR H G + C EC K+F QK+ L +HQR +H G K + C EC K F QK+ L +HQRT
Sbjct: 373 KPFGCSDCRKAFFEKSELIRHQTIHTGEK-PYECSECRKAFRERSSLINHQR-THTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQ-RIHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQRI-HTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQR-THTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 6 Score: 294.278 bits (752), Expect = 5.140e-86 Identity = 182/431 (42.23%), Postives = 247/431 (57.31%), Query Frame = 1
Query: 616 SNNDDLTGADGF-------DYDQSIKPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFECQECAKSFATKSFLVRHQRTVHQGINPFECQECAKSFATKSCLARHQRTIHEGIRPFKCQECGFFFGRKYDLVRHHRIVHEGIKAFECQE----------------------------CGKCFVEKRNLTSHQLTVHEGINPFECQECAKSFATKSCLVRHQRTVHQGIKAFECQECGKTFGQKTNLTSHQRNVHQGITAFKCQECGKSFGQKTNLTSHQRTVHQGIKAFECQECAKCFGQKTNLSSHQRTVHQGIK 1803
+ +DD D F D D +K + C++ E + + + H+ ++L Y C +C K ++ K + I+H +D+ F C C K F ++ H RT H G KP+ C +CGK F++K QLTSH R H KPY+C ECGK F+ KS+L H T H G K + C EC ++F+ KS L+ HQR +H G PFEC+EC K+F+ KS L H RT H G +PF C +C F K +L+R H+ +H G K +EC E CGK F +K +L SHQ+T H G PF C +C K+F+ KS LVRHQRT H G K +EC ECGK F +K +LT+HQR +H G + C ECGK+F QK++L SHQRT H G K +EC EC K FG+K++L++HQRT H G K
Sbjct: 153 AESDDFNVFDNFFLHSKPEDTDTWLKYYDCDKYKESYKKSQIIIYHR--NRLGEKLYECSECRKRFSKKPSLIKHQSRHIRDI-AFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQR-THTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIR-HQTIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEK 569 The following BLAST results are available for this feature:
BLAST of TCONS_00057727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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