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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057728 ID=TCONS_00057728|Name=TCONS_00057728|organism=Clytia hemisphaerica|type=transcript|length=3552bpRun BLAST on NCBI transcript from alignment at scaffold_298:38337..63947+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057728 ID=TCONS_00057728|Name=TCONS_00057728|organism=Clytia hemisphaerica|type=transcript|length=25611bp|location=Sequence derived from alignment at scaffold_298:38337..63947+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057728 vs. Swiss-Prot (Human)
Match: ZNF84 (Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2) HSP 1 Score: 287.73 bits (735), Expect = 9.878e-83 Identity = 163/357 (45.66%), Postives = 216/357 (60.50%), Query Frame = 2
Query: 2276 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRT---------------------------VHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 3265
+ H+T +KP+ C CGK+F+ KS L HQRT H G KP+ C EC K+F K+ L SH RT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K F C +CG++ + K L RH+ T H G K +EC ECG F K L H RI H G K + C ECGK+F Q+ +L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G KP++C++C K+F QK+ L +HQR +H G K
Sbjct: 251 ITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQRI-HTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEK 597 HSP 2 Score: 284.648 bits (727), Expect = 1.322e-81 Identity = 166/361 (45.98%), Postives = 221/361 (61.22%), Query Frame = 2
Query: 2267 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRT---------------------------VHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 3265
K S+ +HQ+ + D F C CGK+F KS H RT H G KP+ C +C K+F K++LTSHQRT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K C +CG++ + K +L H++T H G K F C +CG F RK LVRH R H G K +EC ECGK+F ++ +LT+HQR +H G KP+ C ECGK+F QK++L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G K
Sbjct: 219 KPSLIKHQSRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEK 569 HSP 3 Score: 274.633 bits (701), Expect = 3.664e-78 Identity = 156/328 (47.56%), Postives = 207/328 (63.11%), Query Frame = 2
Query: 2267 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRT 3247
+ S+ HQ T +KP C+ CGK+F+ KS+L HQ T H G KPF+C +C K+F K++L HQRT H G K ++C +CGK F+ K +L HQR +H G KP+ C EC F +K SH R H G KP+EC ECG++F K +L HQ T H G P+EC++C K+F KS L +HQR +H G K ++C C ++ K L RH + H G K +EC EC F K L+ H RI H G K FEC ECGK+F ++ +L HQRT H G KP+ C EC K+F QK+ L +HQR +H G KP++C ECGK+F QK+ L +HQRT
Sbjct: 415 RSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQRI-HTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 4 Score: 264.233 bits (674), Expect = 1.109e-74 Identity = 158/384 (41.15%), Postives = 214/384 (55.73%), Query Frame = 2
Query: 2276 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLF------------------------GRKYDSESH---HRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRT---------------------------VHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 3265
+ +T +KP+ C CG++F+ KSNL HQR +H G KPF C+EC K+F K++L +H RT H G K F C DC K F K L+RHQ T+H G KP++C EC F G+ + +SH H++ H G KPF C +CG++F+ K LV HQ T H G P+EC ECGK+F K +L +HQR +H G K + C ECG++ K +L H+ T H G K +EC ECG FG K L H R H G K +EC++C K+F Q+ L +HQR H G KP++C EC K+F +K++L +HQR +H G KPF+C ECGK+F +K++L HQRT H G K
Sbjct: 307 ISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQR-THTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEK 681 HSP 5 Score: 167.162 bits (422), Expect = 1.715e-42 Identity = 94/206 (45.63%), Postives = 128/206 (62.14%), Query Frame = 2
Query: 2648 GIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 3265
G K +EC EC + F+ K +L+ HQ + H F C CGK+F KS I+H RT H G K + C +CG++ + K L H+ T H G K +EC ECG F RK L+ H R H G K + C ECG++F ++ NL +HQR +H G KPF+C+ECGK+F +K+ L +H RT H G KPF C +C K+F +K+ L HQ T+H G K
Sbjct: 203 GEKLYECSECRKRFSKKPSLIKHQ-SRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWR-THTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEK 401 HSP 6 Score: 158.688 bits (400), Expect = 9.493e-40 Identity = 128/419 (30.55%), Postives = 200/419 (47.73%), Query Frame = 2
Query: 194 HLEIVIKLEDESIGYEDDENVEPIKNHESELSEETNPQNYEISIKLEDESKPQDN-QSTKSMQFLENRNSENLNDGTNCFDQFSPTAG-VSSQIREEITIQFEDELFQNYENDNSQEFFEADKTENSNNDDLTGADGFDYDQSIKPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXXQR-FIFKNLKELSMIKPFECQNYGNTFAEKGSL*EHQRKAHDKIYTFQCHECGQSFAFRFFLQRRQKDVNERMKALCVKVLQTFCREN 1441
HL+++I D DD NV + P++ + +K D K +++ + ++ + + NR E L + + C +FS + Q R I F N + F +++ TG KP+ C++CG+ F Q+S LT H+ H + Y C +C K ++ K+ I H + H +P+ C+EC +AFS ++ L HQR +H G KPFEC+ECGK F+ K QL +HHR H KP+ C +C K F KS L RH+ T+H G K + C E K+F E+ +L HQRT H G K Q+ + + + KPF C G F+ K L HQR H ++C ECG++F+ + L Q+ +C + + FC+++
Sbjct: 140 HLDLLIPKGDYGKAESDDFNVF------DNFFLHSKPEDTDTWLKYYDCDKYKESYKKSQIIIYHRNRLGEKLYECSECRKRFSKKPSLIKHQSRHIRDIAFG--------CGNCGKTFPQKSQFITHHRTHTGE---------KPYNCSQCGKAFSQKSQLTSHQRTHTGEK-PYECGECGKAFSRKSHLISHWR-THTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKS 528 HSP 7 Score: 140.198 bits (352), Expect = 7.726e-34 Identity = 92/244 (37.70%), Postives = 135/244 (55.33%), Query Frame = 2
Query: 620 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXXQR-FIFKNLKELSMIKPFECQNYGNTFAEKGSL*EHQRKAHDKIYTFQCHECGQSFA 1348
KP++C+ECG+ F ++ +LT H+ IH + Y C +C K + K+ I H + H +P++C EC KAF ++ L HQRT H G KP+EC++C K F++K QL +H R +H KPY+C C K F KS L RH L H G K + C E K+F EK +L HQR IH G K ++ + + + + KP+ C F++K L HQR H ++C ECG++F+
Sbjct: 485 KPYECSECGKAFSEKLSLTNHQRIHTGEK-PYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRTHTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFS 721 HSP 8 Score: 139.428 bits (350), Expect = 1.562e-33 Identity = 96/271 (35.42%), Postives = 139/271 (51.29%), Query Frame = 2
Query: 620 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXXQRFIFKNLKEL-SMIKPFECQNYGNTFAEKGSL*EHQRKAHDKIYTFQCHECGQSFAFRFFLQRRQKDVNERMKALCVKVLQTF 1429
KPF C++CG+ F ++S L +H+ H + Y C +C K ++ K + H + IH +P+ C EC KAF +++L HQRT H G KP+EC ECGK F EK L +H R H KPY+C++C K F+ KS L H+ +H G K + C K+F EK L H RT H G K ++ N + + + KPFEC G F+ K L HQR H + C EC ++F+ + L Q+ C++ + F
Sbjct: 457 KPFICSKCGKAFSRKSQLVRHQRTHTGEK-PYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQR-THTGEKPYECRDCEKAFSQKSQLNTHQ-RIHTGEKPYECSLCRKAFFEKSELIRHLRT-HTGEKPYECNECRKAFREKSSLINHQRIHTGEKPFECSECGKAFSRKSHLIPHQR-THTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYRCIECGKAF 720 HSP 9 Score: 132.494 bits (332), Expect = 2.303e-31 Identity = 87/225 (38.67%), Postives = 120/225 (53.33%), Query Frame = 2
Query: 620 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFVCQEYGKSFAEKRNLTLHQRTIHQG*KTXXXXXXXXXXXQRFIFKNLKEL-SMIKPFECQNYGNTFAEKGSL*EHQR 1291
KP+ C+ECG+ F Q+S L H+ H + Y C +C K + K++ H + H +P++C +C KAFS ++ L HQR +H G KP+EC C K F EK +L H R H KPY+C EC K F KS L H+ +H G K F C E GK+F+ K +L HQRT H G K Q+ N + + + KP+ C G F++K L HQR
Sbjct: 513 KPYVCSECGKAFCQKSHLISHQRTHTGEK-PYECSECGKAFGEKSSLATHQR-THTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRHLR-THTGEKPYECNECRKAFREKSSLINHQ-RIHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYRCIECGKAFSQKSQLINHQR 731 HSP 10 Score: 124.405 bits (311), Expect = 7.280e-29 Identity = 73/169 (43.20%), Postives = 99/169 (58.58%), Query Frame = 2
Query: 620 KPFKCNECGERFYQESTLTQHKGIHKLKGYKYRCKQCDKGYNAKNAFIQHHKDIHKDLRPFKCDECHKAFSSETYLTIHQRTVHEGVKPFECKECGKCFAEKRQLTSHHRFVHESIKPYKCQECGKCFATKSYLKRHKLTVHDGIKAFVCQEYGKSFAEKRNLTLHQRT 1126
KP++C +C + F Q+S L H+ IH + Y C C K + K+ I+H + H +P++C+EC KAF ++ L HQR +H G KPFEC ECGK F+ K L H R H KPY C EC K F+ KS L H+ +H G K + C E GK+F++K L HQRT
Sbjct: 569 KPYECRDCEKAFSQKSQLNTHQRIHTGEK-PYECSLCRKAFFEKSELIRHLR-THTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQR-THTGEKPYGCSECRKAFSQKSQLVNHQ-RIHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 11 Score: 107.071 bits (266), Expect = 2.085e-24 Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 2
Query: 2825 IKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 3265
+K + C + ES + + H+ + G K +EC EC F +K L++H I AF C CGK+F Q+ +H RT H G KP+ C +CGK+F QK+ LTSHQRT H G KP++C ECGK+F +K++L SH RT H G K
Sbjct: 177 LKYYDCDKYKESYKKSQIIIYHRNRL--GEKLYECSECRKRFSKKPSLIKHQSRHIRDI-AFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEK 317 HSP 12 Score: 25.7942 bits (55), Expect = 2.085e-24 Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 1
Query: 3262 KGVNCRKCGKSFRQKTTITSH 3324
K CR+CGK+F +K+ + +H
Sbjct: 345 KPFECRECGKAFSRKSQLVTH 365 The following BLAST results are available for this feature:
BLAST of TCONS_00057728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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