Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057729 ID=TCONS_00057729|Name=TCONS_00057729|organism=Clytia hemisphaerica|type=transcript|length=3178bpRun BLAST on NCBI transcript from alignment at scaffold_298:60279..63947+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057729 ID=TCONS_00057729|Name=TCONS_00057729|organism=Clytia hemisphaerica|type=transcript|length=3669bp|location=Sequence derived from alignment at scaffold_298:60279..63947+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00057729 vs. Swiss-Prot (Human)
Match: ZNF84 (Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2) HSP 1 Score: 287.73 bits (735), Expect = 4.467e-83 Identity = 163/357 (45.66%), Postives = 216/357 (60.50%), Query Frame = 3 Query: 1902 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRT---------------------------VHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 2891 + H+T +KP+ C CGK+F+ KS L HQRT H G KP+ C EC K+F K+ L SH RT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K F C +CG++ + K L RH+ T H G K +EC ECG F K L H RI H G K + C ECGK+F Q+ +L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G KP++C++C K+F QK+ L +HQR +H G K Sbjct: 251 ITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQRI-HTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEK 597 HSP 2 Score: 284.648 bits (727), Expect = 6.361e-82 Identity = 166/361 (45.98%), Postives = 221/361 (61.22%), Query Frame = 3 Query: 1893 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRT---------------------------VHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 2891 K S+ +HQ+ + D F C CGK+F KS H RT H G KP+ C +C K+F K++LTSHQRT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K C +CG++ + K +L H++T H G K F C +CG F RK LVRH R H G K +EC ECGK+F ++ +LT+HQR +H G KP+ C ECGK+F QK++L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G K Sbjct: 219 KPSLIKHQSRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEK 569 HSP 3 Score: 274.633 bits (701), Expect = 2.046e-78 Identity = 156/328 (47.56%), Postives = 207/328 (63.11%), Query Frame = 3 Query: 1893 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRT 2873 + S+ HQ T +KP C+ CGK+F+ KS+L HQ T H G KPF+C +C K+F K++L HQRT H G K ++C +CGK F+ K +L HQR +H G KP+ C EC F +K SH R H G KP+EC ECG++F K +L HQ T H G P+EC++C K+F KS L +HQR +H G K ++C C ++ K L RH + H G K +EC EC F K L+ H RI H G K FEC ECGK+F ++ +L HQRT H G KP+ C EC K+F QK+ L +HQR +H G KP++C ECGK+F QK+ L +HQRT Sbjct: 415 RSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQRI-HTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 4 Score: 264.233 bits (674), Expect = 6.401e-75 Identity = 158/384 (41.15%), Postives = 214/384 (55.73%), Query Frame = 3 Query: 1902 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLF------------------------GRKYDSESH---HRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRT---------------------------VHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 2891 + +T +KP+ C CG++F+ KSNL HQR +H G KPF C+EC K+F K++L +H RT H G K F C DC K F K L+RHQ T+H G KP++C EC F G+ + +SH H++ H G KPF C +CG++F+ K LV HQ T H G P+EC ECGK+F K +L +HQR +H G K + C ECG++ K +L H+ T H G K +EC ECG FG K L H R H G K +EC++C K+F Q+ L +HQR H G KP++C EC K+F +K++L +HQR +H G KPF+C ECGK+F +K++L HQRT H G K Sbjct: 307 ISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQR-THTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEK 681 HSP 5 Score: 167.162 bits (422), Expect = 1.351e-42 Identity = 94/206 (45.63%), Postives = 128/206 (62.14%), Query Frame = 3 Query: 2274 GIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 2891 G K +EC EC + F+ K +L+ HQ + H F C CGK+F KS I+H RT H G K + C +CG++ + K L H+ T H G K +EC ECG F RK L+ H R H G K + C ECG++F ++ NL +HQR +H G KPF+C+ECGK+F +K+ L +H RT H G KPF C +C K+F +K+ L HQ T+H G K Sbjct: 203 GEKLYECSECRKRFSKKPSLIKHQ-SRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWR-THTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEK 401 HSP 6 Score: 107.071 bits (266), Expect = 1.845e-24 Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 3 Query: 2451 IKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 2891 +K + C + ES + + H+ + G K +EC EC F +K L++H I AF C CGK+F Q+ +H RT H G KP+ C +CGK+F QK+ LTSHQRT H G KP++C ECGK+F +K++L SH RT H G K Sbjct: 177 LKYYDCDKYKESYKKSQIIIYHRNRL--GEKLYECSECRKRFSKKPSLIKHQSRHIRDI-AFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEK 317 HSP 7 Score: 25.7942 bits (55), Expect = 1.845e-24 Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 2 Query: 2888 KGVNCRKCGKSFRQKTTITSH 2950 K CR+CGK+F +K+ + +H Sbjct: 345 KPFECRECGKAFSRKSQLVTH 365 HSP 8 Score: 95.9005 bits (237), Expect = 5.493e-20 Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 2 Query: 656 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHR 979 KP+ C++CG+ F Q+S LT H+ H G K Y C +C K ++ K+ LI H + H K + C++C +AFS ++ L HQR +H G KPFEC+ CGK F+ K QL +HHR Sbjct: 261 KPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR 367 HSP 9 Score: 89.3521 bits (220), Expect = 4.842e-18 Identity = 57/156 (36.54%), Postives = 78/156 (50.00%), Query Frame = 2 Query: 545 QNHENENIQECFEANKTENSNNDHLTGADGFDYDQSIKPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRFVHEEASKGC 1009 + H E EC E K S HL + KP+ CNECG F ++S L H+ IH G K + C++C K ++ K+ L+ HH+ H K F C C KAF ++ L HQ ++H G KP+EC C K F + L +H R E GC Sbjct: 283 RTHTGEKPYECGECGKA-FSRKSHLISH--WRTHTGEKPYGCNECGRAFSEKSNLINHQRIHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGC 433 HSP 10 Score: 87.4261 bits (215), Expect = 1.801e-17 Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 2 Query: 656 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHR 979 KP++CNEC + F ++S+L H+ IH G K + C +C K ++ K+ LI H + H K + C +C KAFS ++ L HQR +H G KP+ C CGK F+ K QL +H R Sbjct: 625 KPYECNECRKAFREKSSLINHQRIHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQR 731 HSP 11 Score: 87.0409 bits (214), Expect = 2.673e-17 Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 2 Query: 656 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRF 982 KP++C+ECG+ F ++ +LT H+ IH G K Y C +C K + K+ LI H + H K ++C +C KAF ++ L HQR+ H G KP+EC+ C K F+ K QL +H R Sbjct: 485 KPYECSECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQRI 592 HSP 12 Score: 85.8853 bits (211), Expect = 7.050e-17 Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 2 Query: 656 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRF 982 KP++C+ C + F+++S L RH H G K Y C +C K + K++LI H + +H K F+C +C KAFS +++L HQR+ H G KP+ C C K F+ K QL +H R Sbjct: 597 KPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQRI 704 HSP 13 Score: 85.5001 bits (210), Expect = 7.359e-17 Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 2 Query: 656 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRFVHEEASKGC 1009 KP++C +C + F Q+S L H+ IH G K Y C C K + K+ LI+H + H K ++C++C KAF ++ L HQR +H G KPFEC CGK F+ K L H R E GC Sbjct: 569 KPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRT-HTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRTHTGEKPYGC 685 HSP 14 Score: 85.5001 bits (210), Expect = 8.736e-17 Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 2 Query: 656 KPFKCNECGERFYQESTLTRHKGIHKGYK-YRCKQCDKGYNAKNALIQHHKDLHKDLKSFKCDKCHKAFSSETYLTIHQRSVHEGVKPFECQVCGKCFALKRQLTSHHRF 982 KP++C+EC + F + S+L H+ H G K + C QC K ++ K+ LI H + H K F C KC KAFS ++ L HQR+ H G KP+EC CGK F+ K LT+H R Sbjct: 401 KPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISH-QMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQRI 508 The following BLAST results are available for this feature:
BLAST of TCONS_00057729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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