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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057732 ID=TCONS_00057732|Name=TCONS_00057732|organism=Clytia hemisphaerica|type=transcript|length=1821bpRun BLAST on NCBI protein sequence of TCONS_00057732-protein >TCONS_00057732-protein ID=TCONS_00057732-protein|Name=TCONS_00057732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp MNEFEEIKIKVEQEEDHGCNETNHEHLEIVIKLENESIGYPDNEILEPFKRun BLAST on NCBI transcript from alignment at scaffold_298:60355..64211+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057732 ID=TCONS_00057732|Name=TCONS_00057732|organism=Clytia hemisphaerica|type=transcript|length=3857bp|location=Sequence derived from alignment at scaffold_298:60355..64211+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_298:60355..64211+ >TCONS_00057732 ID=TCONS_00057732|Name=TCONS_00057732|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_298:60355..64211+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057732 vs. Swiss-Prot (Human)
Match: ZNF84 (Zinc finger protein 84 OS=Homo sapiens GN=ZNF84 PE=1 SV=2) HSP 1 Score: 287.73 bits (735), Expect = 1.947e-86 Identity = 163/357 (45.66%), Postives = 216/357 (60.50%), Query Frame = 1
Query: 562 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRT---------------------------VHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1551
+ H+T +KP+ C CGK+F+ KS L HQRT H G KP+ C EC K+F K+ L SH RT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K F C +CG++ + K L RH+ T H G K +EC ECG F K L H RI H G K + C ECGK+F Q+ +L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G KP++C++C K+F QK+ L +HQR +H G K
Sbjct: 251 ITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQRI-HTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEK 597 HSP 2 Score: 284.263 bits (726), Expect = 3.455e-85 Identity = 166/361 (45.98%), Postives = 221/361 (61.22%), Query Frame = 1
Query: 553 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRT---------------------------VHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1551
K S+ +HQ+ + D F C CGK+F KS H RT H G KP+ C +C K+F K++LTSHQRT H G K + C +CG+ F+ K NL+ HQR +H G KPF+C+EC F RK +HHR H G KPF C +C ++F K L+ HQ T+H G P+EC EC K+F +S+LI+HQRT H G K C +CG++ + K +L H++T H G K F C +CG F RK LVRH R H G K +EC ECGK+F ++ +LT+HQR +H G KP+ C ECGK+F QK++L SHQRT H G KP++C ECGK+FG+K++L +HQRT H G K
Sbjct: 219 KPSLIKHQSRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHR-THTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRT-HTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQR-THTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQRT-HTGEK 569 HSP 3 Score: 274.248 bits (700), Expect = 1.893e-81 Identity = 156/328 (47.56%), Postives = 207/328 (63.11%), Query Frame = 1
Query: 553 KGSVKEHQTT-VHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLFGRKYDSESHHRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRT 1533
+ S+ HQ T +KP C+ CGK+F+ KS+L HQ T H G KPF+C +C K+F K++L HQRT H G K ++C +CGK F+ K +L HQR +H G KP+ C EC F +K SH R H G KP+EC ECG++F K +L HQ T H G P+EC++C K+F KS L +HQR +H G K ++C C ++ K L RH + H G K +EC EC F K L+ H RI H G K FEC ECGK+F ++ +L HQRT H G KP+ C EC K+F QK+ L +HQR +H G KP++C ECGK+F QK+ L +HQRT
Sbjct: 415 RSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMT-HTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQR-THTGEKPYECSECGKAFGEKSSLATHQRT-HTGEKPYECRDCEKAFSQKSQLNTHQR-IHTGEKPYECSLCRKAFFEKSELIRH-LRTHTGEKPYECNECRKAFREKSSLINHQRI-HTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEKPYGCSECRKAFSQKSQLVNHQR-IHTGEKPYRCIECGKAFSQKSQLINHQRT 732 HSP 4 Score: 264.233 bits (674), Expect = 1.084e-77 Identity = 158/384 (41.15%), Postives = 214/384 (55.73%), Query Frame = 1
Query: 562 VKEHQTTVHDKPFTCLVCGKSFTLKSNLKVHQRTVHQGIKPFLCQECDKSFGNKTKLTSHQRTVHQGIKAFKCQDCGKCFATKRNLVRHQRTVHQGIKPFKCQECNLLF------------------------GRKYDSESH---HRIVHEGIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRT---------------------------VHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1551
+ +T +KP+ C CG++F+ KSNL HQR +H G KPF C+EC K+F K++L +H RT H G K F C DC K F K L+RHQ T+H G KP++C EC F G+ + +SH H++ H G KPF C +CG++F+ K LV HQ T H G P+EC ECGK+F K +L +HQR +H G K + C ECG++ K +L H+ T H G K +EC ECG FG K L H R H G K +EC++C K+F Q+ L +HQR H G KP++C EC K+F +K++L +HQR +H G KPF+C ECGK+F +K++L HQRT H G K
Sbjct: 307 ISHWRTHTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRT-HTGEKPYECSECGKAFSEKLSLTNHQR-IHTGEKPYVCSECGKAFCQKSHLISHQRT-HTGEKPYECSECGKAFGEKSSLATHQR-THTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQR-IHTGEKPFECSECGKAFSRKSHLIPHQRT-HTGEK 681 HSP 5 Score: 167.162 bits (422), Expect = 1.946e-44 Identity = 94/206 (45.63%), Postives = 128/206 (62.14%), Query Frame = 1
Query: 934 GIKPFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGSKSNLISHQRTVHQGIKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1551
G K +EC EC + F+ K +L+ HQ + H F C CGK+F KS I+H RT H G K + C +CG++ + K L H+ T H G K +EC ECG F RK L+ H R H G K + C ECG++F ++ NL +HQR +H G KPF+C+ECGK+F +K+ L +H RT H G KPF C +C K+F +K+ L HQ T+H G K
Sbjct: 203 GEKLYECSECRKRFSKKPSLIKHQ-SRHIRDIAFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWR-THTGEKPYGCNECGRAFSEKSNLINHQR-IHTGEKPFECRECGKAFSRKSQLVTHHRT-HTGTKPFGCSDCRKAFFEKSELIRHQ-TIHTGEK 401 HSP 6 Score: 31.9574 bits (71), Expect = 1.946e-44 Identity = 18/46 (39.13%), Postives = 24/46 (52.17%), Query Frame = 3
Query: 1560 CRKCGKSFRQKTTITSHKNLTSH*STVHRGIKSLKCHECGKYFLEK 1697
C +CGK+F QK+ + SH+ H G K C +CGK F K
Sbjct: 433 CIQCGKAFSQKSHLISHQ-------MTHTGEKPFICSKCGKAFSRK 471 HSP 7 Score: 107.071 bits (266), Expect = 1.354e-27 Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 1
Query: 1111 IKAFKCQECGESLATKRNLERHKVTVHQGLKAFECQECGLLFGRKYDLVRHHRIVHEGIKAFECQECGKSFGQQKNLTSHQRTVHQGIKPFKCQECGKSFGQKTNLTSHQRTVHQGVKPFKCQECGKSFGQKTNLTSHQRTVHQGIK 1551
+K + C + ES + + H+ + G K +EC EC F +K L++H I AF C CGK+F Q+ +H RT H G KP+ C +CGK+F QK+ LTSHQRT H G KP++C ECGK+F +K++L SH RT H G K
Sbjct: 177 LKYYDCDKYKESYKKSQIIIYHRNRL--GEKLYECSECRKRFSKKPSLIKHQSRHIRDI-AFGCGNCGKTFPQKSQFITHHRT-HTGEKPYNCSQCGKAFSQKSQLTSHQRT-HTGEKPYECGECGKAFSRKSHLISHWRT-HTGEK 317 HSP 8 Score: 35.4242 bits (80), Expect = 1.354e-27 Identity = 17/50 (34.00%), Postives = 27/50 (54.00%), Query Frame = 3
Query: 1548 KGVNCRKCGKSFRQKTTITSHKNLTSH*STVHRGIKSLKCHECGKYFLEK 1697
K C +CG++F +K+ + +H+ +H G K +C ECGK F K
Sbjct: 317 KPYGCNECGRAFSEKSNLINHQR-------IHTGEKPFECRECGKAFSRK 359 The following BLAST results are available for this feature:
BLAST of TCONS_00057732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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