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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057733 ID=TCONS_00057733|Name=TCONS_00057733|organism=Clytia hemisphaerica|type=transcript|length=2158bpRun BLAST on NCBI transcript from alignment at scaffold_298:65238..67395+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057733 ID=TCONS_00057733|Name=TCONS_00057733|organism=Clytia hemisphaerica|type=transcript|length=2158bp|location=Sequence derived from alignment at scaffold_298:65238..67395+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057733 vs. Swiss-Prot (Human)
Match: ZN567 (Zinc finger protein 567 OS=Homo sapiens GN=ZNF567 PE=1 SV=3) HSP 1 Score: 171.4 bits (433), Expect = 3.611e-45 Identity = 123/335 (36.72%), Postives = 171/335 (51.04%), Query Frame = 3
Query: 288 KRDLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGAANHI-------TTKKTALSIEKKI--KHKHFECQKCGKSFACKRSLMKHQLIHTGSDS----------PCMDYLPDH--THENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKPLARHQRTVHEGIKAFECQECAESFGQKTTLTFHQRTVHEGIKPYKCQECGKCFARMSCLNQHQLTVHDGIKDFECQECGKCFATKSYLKRHKLTVHDGIKAFECQECGKSFGHKSNLTMHQRT 1229
K LI+H Q H K ++C +CGK F + L++H+ R+H +K + C+ECG++F K L H+R+ G +I ++KT L++ +K + K + C +CGKSF K +L+ HQ HTG S YL DH TH +P+ C+ECGK F+ + + HQ +H G K + C EC +SF QK TLT HQ+ +H G K Y+C +CGK F+R S L HQ T H G K ++C ECGKCF K+ L H+ T H G K + C ECGKSF +K NL +HQRT
Sbjct: 349 KSHLIRH-QRTHTGEKPYECNDCGKSFRQKTTLSLHQ-RIHTGEKPYICKECGKSFHQKANLTVHQRTHTGEKPYICNECGKSFSQKTTLALHEKTHNEEKPYICSECGKSFRQKTTLVAHQRTHTGEKSYECPHCGKAFRMKSYLIDHHRTHTGE-------------------------KPYECNECGKSFSQKTNLNLHQR---------------IHTGEKPYVCNECGKSFRQKATLTVHQK-IHTGQKSYECPQCGKAFSRKSYLIHHQRT-HTGEKPYKCSECGKCFRQKTNLIVHQRT-HTGEKPYVCNECGKSFSYKRNLIVHQRT 638 HSP 2 Score: 171.014 bits (432), Expect = 4.469e-45 Identity = 128/339 (37.76%), Postives = 171/339 (50.44%), Query Frame = 3
Query: 285 RKRDLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVHRNRVHNQKKSFRCQECGETFTHKTYLEEHKRSLHGAANHITT-------KKTALSIEKKI--KHKHFECQKCGKSFACKRSLMKHQLIHTGSDSPCMDYLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKP---------------LARHQRTVHEGIKAFECQECAESFGQKTTLTFHQRTVHEGIKPYKCQECGKCFARMSCLNQHQLTVHDGIKDFECQECGKCFATKSYLKRHKLTVHDGIKAFECQECGKSFGHKSNLTMHQRT 1229
RK LI H Q H K F C ECGK F L+ L H+ R H +KS+ C +C F K++L H+R+ G + +KT LS+ ++I K + C++CGKSF K +L HQ HTG Y+ + ++ K ++ +P++C ECGK F + + HQ H G K L H RT H G K +EC EC +SF QKT L HQR +H G KPY C ECGK F + + L HQ +H G K +EC +CGK F+ KSYL H+ T H G K ++C ECGK F K+NL +HQRT
Sbjct: 292 RKSYLIDH-QRTHTGEKPFVCNECGKSFRLKTALTDHQ-RTHTGEKSYECLQCRNAFRLKSHLIRHQRTHTGEKPYECNDCGKSFRQKTTLSLHQRIHTGEKPYICKECGKSFHQKANLTVHQRTHTGEKP----YICNECGKSFSQKTTLALHEKTHNEE---------KPYICSECGKSFRQKTTLVAHQ-RTHTGEKSYECPHCGKAFRMKSYLIDHHRT-HTGEKPYECNECGKSFSQKTNLNLHQR-IHTGEKPYVCNECGKSFRQKATLTVHQ-KIHTGQKSYECPQCGKAFSRKSYLIHHQRT-HTGEKPYKCSECGKCFRQKTNLIVHQRT 610 HSP 3 Score: 144.821 bits (364), Expect = 4.396e-36 Identity = 121/353 (34.28%), Postives = 155/353 (43.91%), Query Frame = 3
Query: 294 DLIKHRQMVHGRIKLFKCKECGKCFTLRVKLNVH--------------RNRVHNQKKSFRCQECGETFTHKTYL--------EEHKRSLHGAANHITTKKTALSIEKK-IKHKHFECQKCGKSFACKRSLMKHQLIHTGSDS----PCMDYLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKP---------------LARHQRTVHEGIKAFECQECAESFGQKTTLTFHQRTVHEGIKPYKCQECGKCFARMSCLNQHQLTVHDGIKDFECQECGKCFATKSYLKRHKLTVHDGIKAFECQECGKSFGHKSNLTMHQR 1226
+++ Q + F +C K F R L H + R N +K C ECG++F K+ L EE H N K + ++ K F C +CGKSF K +L HQ HTG S C + +H R H +P+ C++CGK F + + HQ +H G KP L HQRT H G K + C EC +SF QKTTL H++T H KPY C ECGK F + + L HQ T H G K +EC CGK F KSYL H T H G K +EC ECGKSF K+NL +HQR
Sbjct: 195 EVLMQYQKTETPAQSFGYNDCEKSFLQRGGLITHSRPYKGENPSVYNKKRRATNIEKKHTCNECGKSFCRKSVLILHQGIHSEEKPYQCHQCGNAFRRKSYLIDHQRTHTGEKPFVCNECGKSFRLKTALTDHQRTHTGEKSYECLQCRNAFRLKSH-----------------LIRHQRTHTGEKPYECNDCGKSFRQKTTLSLHQ-RIHTGEKPYICKECGKSFHQKANLTVHQRT-HTGEKPYICNECGKSFSQKTTLALHEKT-HNEEKPYICSECGKSFRQKTTLVAHQRT-HTGEKSYECPHCGKAFRMKSYLIDHHRT-HTGEKPYECNECGKSFSQKTNLNLHQR 525 HSP 4 Score: 138.658 bits (348), Expect = 5.105e-34 Identity = 109/296 (36.82%), Postives = 142/296 (47.97%), Query Frame = 3
Query: 420 KSFRCQECGETFTHKTYLEEHKRSLHGAANHITTKKT-ALSIEKKIKHKHFECQKCGKSFACKRSLMKHQLIHT----------GSDSPCMDYLPDHTHENLXXXXXXXXXXXXXXXXXXXXXXXXIRPHMCDECGKGFTMQYEVKKHQDAVHKGIKP---------------LARHQRTVHEGIKAFECQECAESFGQKTTLTFHQRTVHEGIKPYKCQECGKCFARMSCLNQHQLTVHDGIKDFECQECGKCFATKSYLKRHKLTVHDGIKAFECQECGKSFGHKSNLTMHQRT 1229
+SF +C ++F + L H R G + KK A +IEKK C +CGKSF K L+ HQ IH+ G+ YL DH + +P +C+ECGK F ++ + HQ H G K L RHQRT H G K +EC +C +SF QKTTL+ HQR +H G KPY C+ECGK F + + L HQ T H G K + C ECGK F+ K+ L H+ T H+ K + C ECGKSF K+ L HQRT
Sbjct: 208 QSFGYNDCEKSFLQRGGLITHSRPYKGENPSVYNKKRRATNIEKK-----HTCNECGKSFCRKSVLILHQGIHSEEKPYQCHQCGNAFRRKSYLIDHQRTHTGE-----------------------KPFVCNECGKSFRLKTALTDHQ-RTHTGEKSYECLQCRNAFRLKSHLIRHQRT-HTGEKPYECNDCGKSFRQKTTLSLHQR-IHTGEKPYICKECGKSFHQKANLTVHQRT-HTGEKPYICNECGKSFSQKTTLALHEKT-HNEEKPYICSECGKSFRQKTTLVAHQRT 470 The following BLAST results are available for this feature:
BLAST of TCONS_00057733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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