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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057741 ID=TCONS_00057741|Name=TCONS_00057741|organism=Clytia hemisphaerica|type=transcript|length=360bp
GACGCATCAAGTTAAGAAGCAACGATTCTGAAGACCATCTACGAATCATT
CCGAACTATTTCACCCACCCTGATGATCTGAATACATTCATTGAATCTTT
CAAATTCGGAAAGAAACTAGCAGCAACATTACCACAATACAATGCATCGA
TTGTCGACTTGAAGGATCCAGCATGTATTGAATTTGCATCAGgttCTGAT
GACTATTACCAATGTACAGCGCTTCGAGGAGCATCAACACTCTACCACCC
AGTGGGTACGTGCAAGATGGGACCCCATACTGATGATCAAGCAGTTGTAG
ATTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGTCGATGCA
TCAATCATNN Run BLAST on NCBI protein sequence of TCONS_00057741-protein >TCONS_00057741-protein ID=TCONS_00057741-protein|Name=TCONS_00057741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
RIKLRSNDSEDHLRIIPNYFTHPDDLNTFIESFKFGKKLAATLPQYNASI
VDLKDPACIEFASGSDDYYQCTALRGASTLYHPVGTCKMGPHTDDQAVVD
STLKVYGIKGLRVVDASIX Run BLAST on NCBI transcript from alignment at scaffold_298:168631..169498+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057741 ID=TCONS_00057741|Name=TCONS_00057741|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at scaffold_298:168631..169498+ (Clytia hemisphaerica)
GACGCATCAAGTTAAGAAGCAACGATTCTGAAGACCATCTACGAATCATT
CCGAACTATTTCACCCACCCTGATGATCTGAATACATTCATTGAATCTTT
CAAATTCGGAAAGAAACTAGCAGCAACATTACCACAATACAATGCATCGA
TTGTCGACTTGAAGGATCCAGCATGTATTGAATTTGCATCAGGTTTGTCA
TCGTGAACATGTCATTAATTATACAGTTAAAAAAATCGTTCAACGTTTGT
TGAATTTACGATGAAAAGATAAAAGTTTGCTAGTCAATTGACAGTGAATA
GTTGAcaatgctatcgtccgtttaaagggTCAGTAAACGCAGAAAAGTAT
ATATGCGCAGAGTCAGGGCGttagggcggtttacgggaaaatagtggcgg
tagagttttggaacaaaacactgtaaacacctccacCATTCTTTACTCCG
CCCCGAACTAAactccattttcaaatttatcccgtcTCTTGGATTATTCT
CTTTTTTAGTAAtaatgtgtagacgatagggTCGTCTATGTGAATAGTTG
AAAAGTCACTATTATTTGCTTTTTCTGATTTGATCATGCAGAGTAGTCAC
AATGTAATATTCTCCTACCCTTCTTTTGGTTTTATTGCACATAGACCAAA
ATGAAATATTGTGATAATCCTTTGGCAATTTTCCctgtttttttcttcag
gttCTGATGACTATTACCAATGTACAGCGCTTCGAGGAGCATCAACACTC
TACCACCCAGTGGGTACGTGCAAGATGGGACCCCATACTGATGATCAAGC
AGTTGTAGATTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTG
TCGATGCATCAATCATNN Coding sequence (CDS) from alignment at scaffold_298:168631..169498+ >TCONS_00057741 ID=TCONS_00057741|Name=TCONS_00057741|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_298:168631..169498+ (Clytia hemisphaerica)
CGCATCAAGTTAAGAAGCAACGATTCTGAAGACCATCTACGAATCATTCC
GAACTATTTCACCCACCCTGATGATCTGAATACATTCATTGAATCTTTCA
AATTCGGAAAGAAACTAGCAGCAACATTACCACAATACAATGCATCGATT
GTCGACTTGAAGGATCCAGCATGTATTGAATTTGCATCAGgttCTGATGA
CTATTACCAATGTACAGCGCTTCGAGGAGCATCAACACTCTACCACCCAG
TGGGTACGTGCAAGATGGGACCCCATACTGATGATCAAGCAGTTGTAGAT
TCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGTCGATGCATC
AATCATNCGCATCAAGTTAAGAAGCAACGATTCTGAAGACCATCTACGAA
TCATTCCGAACTATTTCACCCACCCTGATGATCTGAATACATTCATTGAA
TCTTTCAAATTCGGAAAGAAACTAGCAGCAACATTACCACAATACAATGC
ATCGATTGTCGACTTGAAGGATCCAGCATGTATTGAATTTGCATCAGgtt
CTGATGACTATTACCAATGTACAGCGCTTCGAGGAGCATCAACACTCTAC
CACCCAGTGGGTACGTGCAAGATGGGACCCCATACTGATGATCAAGCAGT
TGTAGATTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGTCG
ATGCATCAATCATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057741-exon-scaffold_298-1491911889:168631..168822 | TCONS_00057741-exon-scaffold_298-1491911889:168631..168822 | Clytia hemisphaerica | exon |
| TCONS_00057741-exon-scaffold_298-1510915933:168631..168822 | TCONS_00057741-exon-scaffold_298-1510915933:168631..168822 | Clytia hemisphaerica | exon |
| TCONS_00057741-exon-scaffold_298-1575043694:168631..168822 | TCONS_00057741-exon-scaffold_298-1575043694:168631..168822 | Clytia hemisphaerica | exon |
| TCONS_00057741-exon-scaffold_298-1491911889:169331..169498 | TCONS_00057741-exon-scaffold_298-1491911889:169331..169498 | Clytia hemisphaerica | exon |
| TCONS_00057741-exon-scaffold_298-1510915933:169331..169498 | TCONS_00057741-exon-scaffold_298-1510915933:169331..169498 | Clytia hemisphaerica | exon |
| TCONS_00057741-exon-scaffold_298-1575043694:169331..169498 | TCONS_00057741-exon-scaffold_298-1575043694:169331..169498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:168631..169498 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
The following BLAST results are available for this feature:
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