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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057743 ID=TCONS_00057743|Name=TCONS_00057743|organism=Clytia hemisphaerica|type=transcript|length=15656bp protein sequence of TCONS_00057743-protein >TCONS_00057743-protein ID=TCONS_00057743-protein|Name=TCONS_00057743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1822bp TETRDTEVCCRKFLGCWKKCKRTSVINKQVSKIVSRLVNYKVHHCCSGYSRun BLAST on NCBI transcript from alignment at scaffold_298:172618..201107+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057743 ID=TCONS_00057743|Name=TCONS_00057743|organism=Clytia hemisphaerica|type=transcript|length=28490bp|location=Sequence derived from alignment at scaffold_298:172618..201107+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_298:172618..201107+ >TCONS_00057743 ID=TCONS_00057743|Name=TCONS_00057743|organism=Clytia hemisphaerica|type=CDS|length=82035bp|location=Sequence derived from alignment at scaffold_298:172618..201107+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057743 vs. Swiss-Prot (Human)
Match: SCUB1 (Signal peptide, CUB and EGF-like domain-containing protein 1 OS=Homo sapiens GN=SCUBE1 PE=1 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36 Identity = 125/402 (31.09%), Postives = 170/402 (42.29%), Query Frame = 1
Query: 364 SVCVNIPGSYYCACKRGYTPFQNNKRNVTECENIDECKKSPCKCAPEITNCHKIATCTDVPGSYKCSCSHGYRLSRDNL-CVDRNECFENENICPQICQNTIGSYQCKCFDGF--------------------------------------------EWDPXXXXXXXXXXXXYG-GGCEHTCFPVHAGKVCLCRSGYTLNKDQHSCNDINECALSNPCDPRTSYCENYEGGYRCVCKKGFFKAYNGLLCLDRNECAEKTASCEQRCENTIGGYRCSCNVGLQLQKDGKTCKDIDECKSRYTNRCTQKCVNTIGSYACACDPGYWLGVDKRTCYA-KKCEAVSDPFYGEASCEGYIIGKKCQFSCASGFELTGPRERVCQPNGKWSGSTVKCLPKKCGIPTA 1428
++C N P SY C CK GY K +CE+IDEC+ + N + C ++PG+Y+C+C G+ L+ D C+D +EC +N C QIC N +GSY+C+C GF +D A C YG GGC+H+C G C C Y L+ D +C I CA++N RT C++ G RC C GF +G C D NEC C+ C NT+G + C C G +L D +TC+DIDEC + C C+N+ GS+ C C GY L Y C V + SC+ + K + C P R NGK T KCL + P A
Sbjct: 48 AICQNTPKSYKCLCKPGY------KGEGKQCEDIDECEN-------DYYNGGCVHECINIPGNYRCTCFDGFMLAHDGHNCLDVDECQDNNGGCQQICVNAMGSYECQCHSGFFLSDNQHTCIHRSNEGMNCMNKDHGCAHICRETPKGGVACDCRPGFDLAQNQKDCTLTCNYGNGGCQHSCEDTDTGPTCGCHQKYALHSDGRTC--IETCAVNNGGCDRT--CKDTATGVRCSCPVGFTLQPDGKTCKDINECLVNNGGCDHFCRNTVGSFECGCRKGYKLLTDERTCQDIDECS--FERTCDHICINSPGSFQCLCHRGYIL-------YGTTHCGDVDECSMSNGSCDQGCVNTKGSYECVC------PPGRRLHWNGKDCVETGKCLSRAKTSPRA 417 The following BLAST results are available for this feature:
BLAST of TCONS_00057743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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