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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057746 ID=TCONS_00057746|Name=TCONS_00057746|organism=Clytia hemisphaerica|type=transcript|length=15835bp transcript from alignment at scaffold_298:172621..201107+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057746 ID=TCONS_00057746|Name=TCONS_00057746|organism=Clytia hemisphaerica|type=transcript|length=28487bp|location=Sequence derived from alignment at scaffold_298:172621..201107+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057746 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 135.191 bits (339), Expect = 2.205e-39 Identity = 96/274 (35.04%), Postives = 133/274 (48.54%), Query Frame = 1
Query: 358 SSVCVNIPGSYYCACKRGYTPFQNNKRNVTECENIDECKKSPCKCAPEITNCHKIATCTDVPGSYKCSCSHGYRLSRDN-LCVDRNECFENENICPQICQNTIGSYQCKCFDGFEWDPXXXXXXXXXX-XXYGGGCEHTCFPVHAGKVCLCRSGYTLNKDQHSCNDINECALSNP-CDPRTSYCENYEGGYRCVCKKGFFKAYNGLLCLDRNECAEKTASCEQRCENTIGGYRCSCNVGLQLQKDGKTCKDIDECKSRYTNRCTQKCVNTIGSY 1170
+ C+NIPGSY C CK+GY N+ + +++ CA E NC ++ C +VPGS+ C C GY L+ D CV + C + C C N GSY C+C +GF +P K C + GC+H C C C G+TLN D+ +C IN CAL+ P C+ C N E Y C C +G+ NG C + CA++ CEQ C NT + C C+ G + +D KTC +D C + C CVN S+
Sbjct: 250 AHFCINIPGSYVCRCKQGY--ILNSDQTTCRIQDL---------CAMEDHNCEQL--CVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHE---CVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLS-DHGCEYSCVNMDRSF 506 HSP 2 Score: 50.0618 bits (118), Expect = 2.205e-39 Identity = 27/74 (36.49%), Postives = 39/74 (52.70%), Query Frame = 3
Query: 1191 CEQRCENTIGGYRCSCNVGLQLQKDGKTCKDIDECKSRYTNRCTQKCVNTIGSYACACDPGYWLGVDKRTCYAK 1412
CE C ++ + C C G L++DGKTC+ D C++ + C CVN+ SY C C G+ L D + C K
Sbjct: 536 CEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQA-IDHGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRK 608 HSP 3 Score: 108.612 bits (270), Expect = 6.293e-34 Identity = 86/272 (31.62%), Postives = 121/272 (44.49%), Query Frame = 1
Query: 364 VCVNIPGSYYCACKRGYTPFQNNKRNVTECENIDECKKSPCKCAPEITNCHKIATCTDVPGSYKCSCSHGYRLSRD-NLCVDRNECFENENICPQICQNTIGSYQCKCFDGFEWDPXXXXXXXXXXXXYGG-GCEHTCFPVHAGKVCLCRSGYTLNKDQHSCNDINECALSNP-CDPRTSYCENYEGGYRCVCKKGFFKAYNGLLCLDRNECAEKTASCEQRCENTIGGYRCSCNVGLQLQKDGKTCKDIDECKSRYTNRCTQKCVNTIGSY 1170
+CVN+PGS+ C C GY ++ KR C +D C C E C + GSY C C G+ L+ D C + C + + C C NT SY C C GF +P K C+ N C GCEH C + C C GYTL+ + +C+ ++ CA + C+ C N E + C C +GF + C + C CE C N + C C G L+ DGKTC +D C + + C CV++ S+
Sbjct: 293 LCVNVPGSFVCQCYSGYALAEDGKR----CVAVDYCASENHGCEHE---------CVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCE---QLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSC-ALGDHGCEHSCVSSEDSF 547 HSP 4 Score: 58.5362 bits (140), Expect = 6.293e-34 Identity = 33/76 (43.42%), Postives = 40/76 (52.63%), Query Frame = 3
Query: 1191 CEQRCENTIGGYRCSCNVGLQLQKDGKTCKDIDECKSRYTNRCTQKCVNTIGSYACACDPGYWLGVDKRTCYAKKC 1418
CE C N+ Y C C G +L +DGK C+ D CKS + + C CVN SY C C G+ L D R C KKC
Sbjct: 577 CEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTH-HGCEHICVNNGNSYICKCSEGFVLAEDGRRC--KKC 649 HSP 5 Score: 100.138 bits (248), Expect = 2.100e-20 Identity = 103/354 (29.10%), Postives = 146/354 (41.24%), Query Frame = 1
Query: 130 CCSGYSVNDEKTEC-TKPVCFPPCKNGGKCKQPDQCSCAKGFEGTICQFDKNECLPG---KEGYSKCLAMQKGGDGAQQSSSVCVNIPGSYYCACKRGYTPFQNNKRNVTECENIDECKKSPCKCAPEITNCHKIATCTDVPGSYKCSCSHGYRLSRD-NLCVDRNECFENENICPQICQNTIGSYQCKCFDGFEWDPXXXX-XXXXXXXXYGGGCEHTCFPVHAGKVCLCRSGYTLNKDQHSCNDINECALSNPCDPRTSY-CENYEGGYRCVCKKGFFKAYNGLLCLDRNECAEKTASCEQRCENTIGGYRCSCNVGLQLQKDGKTCKDIDECKSRYTNRCTQKCVNTIGSY 1170
C GY +N ++T C + +C N C+Q C +CQ C G E +C+A+ CVN GSY C C G+ + K C ID C S C E C + SY C C G+ L+ D C N C N+ C C N SY C+C G+ DP K + + + GCE C VC C G+ +N+D +C+ ++ C LS D Y C N + + C C +G +G C + CA CE C ++ + C C G L++DGKTC+ D C++ + C CVN+ SY
Sbjct: 264 CKQGYILNSDQTTCRIQDLCAMEDHN---CEQL----CVNVPGSFVCQ-----CYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKT----CTKIDYCASSNHGCQHE---------CVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLS---DHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQA-IDHGCEHICVNSDDSY 588 HSP 6 Score: 98.2117 bits (243), Expect = 9.978e-20 Identity = 84/271 (31.00%), Postives = 124/271 (45.76%), Query Frame = 1
Query: 367 CVNIPGSYYCACKRGYTPFQNNKRNVTECENIDECKKSPCKCAPEITNCHKIATCTDVPGSYKCSCSHGYRLSRDN-LCVDRNECFENENICPQICQNTIGSYQCKCFDGFEWDPXXXXXXXXXXXXYGG-GCEHTCFPVHAGKVCLCRSGYTLNKDQHSCNDINECALSNP-CDPRTSYCENYEGGYRCVCKKGFFKAYNGLLCLDRNECAEKTASCEQRCENTIGGYRCSCNVGLQLQKDGKTCKDIDECKSRYTNRCTQKCVNTIGSY 1170
CVN SY C C +G+T + K C I+ C + C E C ++ SY C C GY L + C + C + ++ C Q+C NT S+ C+C +GF + LK C + C GCE++C + C C G+ L D +C ++ CAL + C+ C + E + C C +G+ +G C ++ C CE C N+ Y C C G +L +DGK C+ D CKS + + C CVN SY
Sbjct: 376 CVNTDDSYSCHCLKGFTLNPDKKT----CRRINYCALNKPGCEHE---------CVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHS---CVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTH-HGCEHICVNNGNSY 629 HSP 7 Score: 97.4413 bits (241), Expect = 1.448e-19 Identity = 101/332 (30.42%), Postives = 141/332 (42.47%), Query Frame = 1
Query: 130 CCSGYSVNDEKTECTKPVCFPPCKNGG---KCKQPD---QCSCAKGFEGTICQFDKNECLPGKEGYSKCLAMQKGGDGAQQSSSVCVNIPGSYYCACKRGYTPFQNNKRNVTECENIDECKKSPCKCAPEITNCHKIATCTDVPGSYKCSCSHGYRLSRD-NLCVDRNECFENENICPQICQNTIGSYQCKCFDGFEWDPXXXXXXXXXXXXYGG-GCEHTCFPVHAGKVCLCRSGYTLNKDQHSCNDINEC-ALSNPCDPRTSYCENYEGGYRCVCKKGFFKAYNGLLCLDRNECAEKTASCEQRCENTIGGYRCSCNVGLQLQKDGKTCK 1098
C G+++N +K CTK + + N G +C D C C KGF DK C + C A+ K G CVN+ SYYC C RGYT N K C +D C + C C + S+ C CS G+ ++ D C + C +++ C C N S+ C+C +G K C + C G GCEH+C VC C GY L +D +C + C A+ + C+ C N + Y C C +GF A +G C ++ C CE C N Y C C+ G L +DG+ CK
Sbjct: 346 CHEGFALNPDKKTCTK-IDYCASSNHGCQHECVNTDDSYSCHCLKGF---TLNPDKKTC----RRINYC-ALNKPG-----CEHECVNMEESYYCRCHRGYTLDPNGKT----CSRVDHCAQQDHGCEQ---------LCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAIDHGCE---HICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRCK 647 The following BLAST results are available for this feature:
BLAST of TCONS_00057746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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