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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057749 ID=TCONS_00057749|Name=TCONS_00057749|organism=Clytia hemisphaerica|type=transcript|length=2845bpRun BLAST on NCBI protein sequence of TCONS_00057749-protein >TCONS_00057749-protein ID=TCONS_00057749-protein|Name=TCONS_00057749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp GQQNSTRTPSPGYLFGHHFLCSFIKLSLGMPTMPLRERYYENMEDRRKSRRun BLAST on NCBI transcript from alignment at scaffold_298:348112..360202+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057749 ID=TCONS_00057749|Name=TCONS_00057749|organism=Clytia hemisphaerica|type=transcript|length=12091bp|location=Sequence derived from alignment at scaffold_298:348112..360202+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_298:348112..360202+ >TCONS_00057749 ID=TCONS_00057749|Name=TCONS_00057749|organism=Clytia hemisphaerica|type=CDS|length=18216bp|location=Sequence derived from alignment at scaffold_298:348112..360202+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00057749 vs. Swiss-Prot (Human)
Match: CLK2 (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1) HSP 1 Score: 388.267 bits (996), Expect = 1.343e-123 Identity = 187/343 (54.52%), Postives = 249/343 (72.59%), Query Frame = 3
Query: 468 SSKIKNDEEGHLVYRVGDRLHERRYKIYGLLGEGTFGKVLECHD-RKHDRQVAIKIIKNKKKYREAAKLEIEVFKQLRKNDPDGKHNCIKCYGTFRHGGHVCLIFPKLGKSVFEFMKDNDYQPYTLKQVQHIAYQLLDSVCFLHKIKLTHTDLKPENMLFVNSSSRSIWSENARQNIKILDHCDVQLIDFGSATFEHEHHSRIVSTRHYRAPEVILELGWSYPCDVWSCGCIIFELYTGDALFRTHDNLEHLAMMERILGKLPKKMMKASDKQKYFRDGVLDWDEKDHNGQFVKTNCVPLRETFNSDDRRATEELYHLVDRLLTYTPEDRLTAKEALSHPFFS 1493
+ +++D EGHL+Y VGD L ER Y+I LGEGTFG+V++C D R+ +VA+KIIKN +KY+EAA+LEI V +++ + DPD K+ C++ + F + GH+C+ F LG S F+F+KDN+Y PY + QV+H+A+QL +V FLH KLTHTDLKPEN+LFVNS ++ +++ + + V+++DFGSATF+HEHHS IVSTRHYRAPEVILELGWS PCDVWS GCIIFE Y G LF+THDN EHLAMMERILG +P +M++ + KQKYF G LDWDE G++V+ NC PLR S+ +L+ L++ +L Y P RLT EAL HPFF+
Sbjct: 140 AKSVEDDAEGHLIYHVGDWLQER-YEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQTHDNREHLAMMERILGPIPSRMIRKTRKQKYFYRGRLDWDENTSAGRYVRENCKPLRRYLTSEAEEH-HQLFDLIESMLEYEPAKRLTLGEALQHPFFA 480 The following BLAST results are available for this feature:
BLAST of TCONS_00057749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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