TCONS_00057750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057750
Unique NameTCONS_00057750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057750 ID=TCONS_00057750|Name=TCONS_00057750|organism=Clytia hemisphaerica|type=transcript|length=2610bp
CAGGACAACAGAATTCGACAAGAACTCCATCGCCAGGGTATCTTTTTGGG
CATCATTTTCTCTGTTCGTTCATTAAGTTATCTTTAGGTATGCCTACAAT
GCCACTAAGAGAAAGATATTATGAAAATATGGAAGATAGAAGAAAATCAA
GAAGTAGAAGTATTATCGAAAAAGCATATGAAAAGCCATATCAACTAAGA
TCAAGTCACAAATATCCAGCTACAAGATCCAGCAAAAGATTGAGAAGAGG
TTCCTCTGGTACAAGAACTTCTCGATATTCAGATGAAAAATGCATTAGAT
CAAAGATAAAATATACGGCCTTCTAGGAGAGGGAACATTTGGAAAGGTTT
TGGAATGTCACGATCGaaaacacGATCGACAGGTAgcaataaaaattata
aaaaataaaaagaaatatagaGAAGCTGCCAAACTTGAAATTGAAGTGTT
CAAGCAACTAAGAAAAAATGATCCTGATGGAAAACACAATTGTATCAAAT
GTTATGGAACTTTTCGCCATGGTGGTCATGTTTGTTTAATATTTCCAAAA
CTTGGGAAAAGTGTCTTTGAATTTATGAAAGACAATGACTACCAACCATA
CACATTGAAACAAGTGCAGCATATAGCATATCAACTTCTCGATTCTGTCT
GTTtTCTCCACAAGATCAAATTGACACATACAGATTTGAAACCAGAAAAT
ATGTTATTCGTAAATTCATCTTCACGGTCTATATGGAGTGAAAATGCTcg
tcaaaatataaagattttAGACCATTGTGATGTACAACTGATCGATTTCG
GCTCCGCAACTTTTGAACACGAGCATCACTCAAGAATTGTTTCTACGAGG
CATTACAGAGCTCCTGAAGTCATACTAGAATTGGGTTGGTCTTATCCTTG
TGATGTGTGGAGTTGCGGATGTATCATCTTTGAATTATACACCGGTGATG
CCCTTTTTCGTACGCACGATAATTTGGAACACTTAGCCATGATGGAGAGA
ATATTAGGGAAATTAccaaagaaaatgatgaaagCTTCTGATAAACAAAA
ATACTTTCGTGACGGAGTATTGGATTGGGATGAGAAGGACCATAACGGAC
AATTTGTCAAAACGAACTGTGTTCCATTGAGAgagACGTTTAACTCGGAC
GACCGCCGTGCTACAGAAGAGCTTTATCATCTTGTCGACCGTCTATTAAC
TTACACACCTGAAGATCGGCTGACGGCAAAAGAAGCTCTCTCTCATCCGT
TCTTCAGTGAGGATATCTCTGCAAGAAAGAAGTGATATCACGTTTTTTAt
tcacaagaaaaatattttcgaatcaCTTTTGTTGTAAAGAATTGTAAATA
CAGTATAGTATGCCTCCCATTCAATTTCTTTTATAGTTGAGTAGCTCACA
TGcagagtacacgttttttttttttataagaacacctaagatttggctga
gcctggatgtgcttatttttttagcaattttcagcctaaaatgttcttaa
atgcgttcttaatttttcatcagactactctaaatcgataatatgataca
aaataaagagcactttaATTTGGcacaatttggacaatatttgactctcg
acttttgaagatccacccctaaattcggttaaaactgcttaaaaagagga
aaaaattgtagtttcttgtcatttttTTCCAAACTGAGGCTGGGCATGTT
CTTAAcatgttcttaatttttcgacgaatttcagcctatatgttcttata
aactaggttctaataaaaaaaaaacgtgtaccttggTAGAAGATTTTCTA
TAGCTTTGTGGGTTTTGCAGACCTTGCATAAGTGCAACATTCTTGTACGG
TTCAGGTCGAAATAAAACTACAGTTTactttcgctaattcgaactagagc
gggaaattttatttgttcgaattacagagagacttgaattatagaaagta
ttttaagaaggTTTCTCCTGTACGGGAACTGGAATTAAGTTCGAACTATC
TAGAAAGATTCGTCAAATGTTAaagacttttcacaaaaaaattttctttc
acttGAAGTGGTCTGACGGTACTTTTTTTCGGTACACGCTGCATATCCTC
TTTATTGTTTCACAACTTCGTTCCCTGTTTATTTTCCTCTAAAGAATctt
gcattgtaacacgcatgcgtaatttgtcgttcttttaaaccatatgtagt
taattcccgtgataaaaaAAAGGAATGAATTCGTAGGGGTGGAAATTTGT
CGTTccatttgtctatttttagtaaatgtagGATCATTTAGATAAACCCT
CTCCTGCGTCTTATAAGCTTTTTGATACTTACTGATAGCACCAGATAATT
CCCTGGCGTCTATCATCAACGTAAATAAAGCTTGGACTACACGGGAACGA
GGTTGATTGTTtcataaaagtaaaatatttctttgtcCTCATGTTCCAAG
ATccttttttaaattatatagaaaacttgtttgtttttataCTACGTTTT
TCATACTACTATTTTCAATACAATGAAATGAGTGTATTATATTATACATT
GTTatattgaatgaatgaataattAGTCCAAAATATATTTATCCAAAACA
AATCGCTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_298:348112..360202+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057750 ID=TCONS_00057750|Name=TCONS_00057750|organism=Clytia hemisphaerica|type=transcript|length=12091bp|location=Sequence derived from alignment at scaffold_298:348112..360202+ (Clytia hemisphaerica)
CAGGACAACAGAATTCGACAAGAACTCCATCGCCAGGGTATCTTTTTGGG
CATCATTTTCTCTGTTCGTTCATTAAGTTATCTTTAGGTATGCCTACAAT
GCCACTAAGAGAAAGATATTATGAAAATATGGAAGATAGAAGAAAATCAA
GAAGTAGAAGTATTATCGAAAAAGCATATGAAAAGCCATATCAACTAAGA
TCAAGTCACAAATATCCAGCTACAAGATCCAGCAAAAGATTGAGAAGAGG
TTCCTCTGGTACAAGAACTTCTCGATATTCAGATGAAAAATGCATTAGAT
CAAAGGTTGGTATTTAAGTCTTATGTTTTGTTGTTTGATGTTTACTccag
ctttttctgatttccatGGTCCTTTCCAATAGCAAACATCCTGATCTGGa
gtaaagaaaaaggaagaagaacTTCACCGTCTTCCTGTTTAtgattttcc
accattttttcaTTCACATCATAGcaaaaggttcaatctcaaaacaaaaa
tgctttTCCTGTCATTCCTGTATTTTTTGATGGGATTAACAGTTAGGGGA
CTCGTCCATATTCATTTAACAATGCATAACGTCGAATCGACGTTATCCTC
TGAGCCCCGCCCCCACCCCTTCTCCCCCCACAGGTACAGATATTGGCAAG
CGATGTATGCCAAAAGTTGTCATATTTTCATCAATGTTTTCCCGTCGCAA
AGTCTGTACTTGGTTGTACCCATGcgtgtatgtgttcttttaactaatga
cctttatttaaaaagaaattaaaagctccaTCCACTTGGCGCTAGGTCCT
TGCCGTGCTTTAGGcgtaccaccttctttgcccACTTGTGCGATGTGGTT
AGCTCGATCacacaaacaatgaaaatatgaagTAAAGTTATCATAgccag
ttacatcaaaatgcctcgaaaatgtcaatatgaaaattgcgtaatcagag
aacatatgtctcgctcattataaaaaggccgagacaaactttcaataatt
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNta
ttcacatactgaatttgaaagatcttctatgtggcgttttttttgcaaac
ttcaaaaaactgatttttgtcccgcctttgcgggattttagcccaagtgc
ttgagtgcagcatagggtacaaagtccaaatatgcgtttcccgtaatttt
tgtatgaagagttaggtctatactgactGATGTCAAgcttaacttttgaa
aaccccccaccccctcaCAACATCAATTTGATGTTTTGcattgtcaaatg
aatatggacggctcccctTAGTCACACTAggtggcaatcacaaatatctt
tgtttcaccgcccgaccgactctcgaaaattgagtagaattgagtcggtg
agtcggtaaatttgtcagactttttctgtcaatgatgtttcctttgttca
aaatttttattattgccaattttttgcgagcgatttctagcgcattcgca
gcattttgactttgtttatcattacatgcgccattttgggtcGGAGAGGT
CACACTGTTCAAAGGTCTTGATTTGAAACCACCCATAACACgtggttgtt
ttggctgctgactggctggcagtttcctttAAGAATACACTCCAAAAGGG
ATGATGGATGAtgaaaacccgaaaattttttcgaccgaccgaccaaccga
ctcactttttaggcccaacgaggacgcgaaatgaagatatttgtgattgt
aGCCCTACAAGGCAGGATCTGTTCAGTCAGTAACAATCAACTAATTTGTA
CAGTATGTTCAGTGCCTTATAAACACAGAAATTTCATAATGGTAgcctat
ctatctatctatctatatatttcatactaAAAGGTCCTAGGACCCATTAT
CCGTACatttgtttgtttgaaaaaatgaaatatgaataaataaatcagaa
taaaaatgaaatgttaAGAGCAATAAAAACccctaaattaaaaaaactct
ttGCTGCAACAAGGTGAAATGAGTGTATTGTATTCACAATTTTGTATACA
ACCTTATGTATATGTAACCTTGCTACAGTAAATGTTGGATTCTGAAATAG
GGCACAgattaattttgatgaattttttatcaatttatcaATTTAAGGGT
TTTTTCATACTTAAAGCTTCTGGAATTTACTCTTTACAGTAGCTCTAAAA
CATCTAAAATTACAATAAAGTTTAGAATGTTCTAATTTGAACATCGATGT
CCCTATAAGGACATCAAAATGGTGACTTGTCTAGACAGTATCCTTATTGG
GACAGTGTCCTAATTAGTCAAATGTTCCTGACTGCTGTTTGAGCgctaaa
aaacaaaatgaaccTTTTGCAAGACAGAATGCCATTTTGACTCAATTAAT
CAACGGTAAAAGCAATatcataagttggtctaatgtcgacattccctctt
ctaatttcaacacccttctttagagataggaataataggaaggttggaat
cgctgatggaaactttctttccttggcAATCAGagtggaaaaaacttttt
tctattaGTGATCCCAACCTTCCTAATACTCCtatctctaaaaaagggtg
tcaaaattagaagaggggtgTCGGCATTAAACCGAAACTTTCAATCTTCA
TAACTTCTGATAGGAACATTTTGAAGTAtgttcatgctctttccgcttgg
accatcagattttgattatttctGAAAATATGAATCTAATTGaggacgtc
atctggcaggtgggcATGTGCCATAATTTGGTGATActctttaaaattaa
gttttctcTAAGCATAATCTGTGCCAATTATCCATTCCTTTGTCACCATC
TGaagttttcttatatttttaagTGCTAACAGACTTCAACTACAGTGGAT
CTCTTAAGTTTGAAAGAAAGTAGAAATCTCTGTTGACAAGACTTTAACCT
TTAATTTAGTCAATTTTGAGGATAAGAATTCTGAATCTGAATGTTAATGT
AGGAAAATTCATGATCATATTCTAAAAATACAGTGTCCTTTGCTGTCTTT
GGTCCTTTAGTGTTTTTCCACCAAAAGAATTTCTTGATTTCAAAATTGCG
CTTGGAGAACATGAATTGAGCTAATAGCCAATGTGGAATCATGTCAGTGA
GTTTCCTATTGTTCTCTCACACTATCTCACAAGTTTACGCATACATTTAA
CAAATTAATGTATGTATGTAAAGCTCCTTCTTTCCACTTGCCTTAAGTAG
GGAAAATTGGCCATGTTTAATCATTCACGCAACTAATCAAAAAACATATA
TGCATTTTTCGTATTATCAGACATGAGAATGCCTGTGTTAGTGTTGCATG
TCATTGTGTGGTCTATGTATTCTACTATATAATACAGAAGAGAAGCCAAC
ATGATAGTCGGAGAAGCACAGACAGAAAAACATCAAGAGATCTAAGCTGC
AGTAGGACATCCCATTCCACATCTTgcaataacaacaacaacaacaacac
tcAAAGACGATGTAGCAAAAAATCTTCACCAACCCGACATGATTCAACAT
CCTCCAAGATAAAAAATGACGAGGAGGGACATCTTGTTTATAGAGTGGGA
GATCGCCTCCACGAACGCAGATGTACTTAAATACCTTTTAGTTTGTTCGC
TTCCCAAAACCATGCTATGCACACAATCTAATCTCAGGTTTAGTTTAACA
TCAACAATAAAACGAGTTAGATGACTAATACTAGTCCCCAATGACCCTCT
GACAAGAGGAATCACTCTATTGGCAGCAAAATACAAGTTGAAAAACCTGT
CACTAATCTGCTTGGTCTGAATTGAACTTCATTTAAAGGTGACAGTGACC
AATAGGGGTTTGGATCTCAAATGGGTGGAATCTGGGCGCTTCTTTTTTGG
ATATATTTTTATTGTGTTTTCCTTCTTTATTTCAGATAAAATATACGGCC
TTCTAGGAGAGGGAACATTTGGAAAGGTTTTGGAATGTCACGATCGGTAA
GCATCATGATTTGTTATTTCCTTCTCAGAAATTTTATAAATGGATATTAA
GACTTCAGGcatcttcttatttttttaatagGGGTTGCATCTTCGGTGGG
GGGGGCTCAATTTGATTGATGTGAGATTTGTCTTTTACataaaatgctca
ctttcagcataaccACTTGTCCAAATTTGCTGAAACTTTGGCTACAAGCT
TGTATTACCAATACCTAACACTTGTCAATAGCATTTTTTCCAATCACTAC
AGTATCCTAGGGCTGTTTAGGCAAAAAAGGGCAATTCTGGGCCGGTCTGC
AAAATACACAATACAaacatgtgaaaaaaatttacccTCTGCCCCAAAAG
TTCATGTCACTAGGAGTTTCCtaacaaaattttatcaaaaaaagttagGC
AGGAGGTCCTTTTTTCGGTATTTTGCAACAATGATGACGCCTCTCCCCCA
AGATGCTTAAAGGGTTAATCTAAGTAGTAATTGTTGAAAAACCATTTGAC
AAACTATATTGAACTATGCAGATTATTTTCTTAATTCTACAATTattcta
acttttttttgtagaaaacacGATCGACAGGTAgcaataaaaattataaa
aaataaaaagaaatatagaGAAGCTGCCAAACTTGAAATTGAAGTGTTCA
AGCAACTAAGAAAAAATGATCCTGATGGAAAACAGTAAGTCCtgtccatt
tttgttttttttcttccccATGTTTCTTATTATTTCTCAAGTTTTTTACA
TCTTTAATGGGGTAAATTCNttttttttttcttccccatgttttttatta
tttctcaAGTTTTAACATCTTTAATGGGGTAAATTCAGAAGAATGTATAC
TTACTGTATTACTTCTATTAAACGCCCCAGATATTATGTCCCTCCTAGAG
GGGAGGCATTTATTTGAGGGGAtgcttattgaaaaaaaattttccagtaa
GGGGCATttaataaatttgataaaggAGAGGGGAcctttattcaaagtaa
taggGTTAGTAGTAACAGAAGTGTTACCATTTATTCTACTAGGTTGTCTT
TGTTACAAATTGACCCAATTTTCACTCAACTATAATAACCAATAAGTATT
TTGTGATAATTTCAAGTCTGTTGAATACATGACCAGTTTTTTGTAGagga
ttgattgattgattgattgattctttTTTTCTAGCAATTGTATCAAATGT
TATGGAACTTTTCGCCATGGTGGTCATGTTTGTTTAATATTTCCAAAACT
TGGGAAAAGTGTCTTTGAATTTATGGTAGGTTAACTTCACTTACAtagtt
tgaatatatttttttgtttaacaCTAAAGCATACTGCACAGTTCCGTTTC
TGAAGCTTTGTTGTCACTTGAGCATGGGCGGCATTTCTCTGTAAACCCTA
AGGAATCGTTACTGGTTAATTTTTGCATAGAGATTTATTTATATTCAATG
ATAATGTTAATGGGGCATAATGTAATCATTTCctaaagaaaatcaaatcc
CCATGTTCTAAATAAATTTCTATACAATAGAAACAAGTAAGAAGCTTTGA
tttaatgttttgaatttttaaaaacatcttgTTTACAATTTCTTTAGAAA
GACAATGACTACCAACCATACACATTGAAACAAGTGCAGCATATAGCATA
TCAACTTCTCGATTCTGTCTGTTGTAAGTTTTCTTCAAGGCTTGCATCTA
AATCTTTCTCTTGAAAGTATTACATTTCAATACGTTTAGTGTTCGTTTTT
TTCAAGTAGCTATCATTCCATCAATTAGGAGTGCtagtttttaaataatt
tgCAATTGATTTTGAAAACCTGAAAACTATAACAGTACTTTTAATTTTGG
TAATaagaattttacaaaattgctgAAAGTTattatgtttattttttcag
tTCTCCACAAGATCAAATTGACACATACAGATTTGAAACCAGAAAATATG
TTATTCGTAAATTCATCTTCACGGTCTATATGGAGTGAAAATGCTGTAAG
TAGGGGATGATAGAATTTGAAACAATTACCAAGCTTCGAGATTAGTGTGA
AAATAATGTGGGCTTGGTGTCACCTAATCATCCCTATTCAAAATCTAccg
agtttttttgtttttttatgcaTTCTTAGCCTAAAAAAGTAAAAGtcatt
tttagtaaaaaaaataagatttttgtttgttttacgAACCTTGATTAAGA
CCTATGGGAGAAGGCGAATGGTCATTGAGACTTGGAGGGATAGTGTTCTC
AACATCAAGATACTAGATAGTAGACAATACTTCATTTCCTGCAAACCtct
gaaaaaatcttcaattgaaatatttttcttctttcttcagcgtcaaaata
taaagattttAGACCATTGTGATGTACAACTGATCGATTTCGGCTCCGCA
ACTTTTGAACACGAGCATCACTCAAGAATTGTTTCTACGAGGCATTACAG
AGCTCCTGAAGTCATACTAGGTAGGTTCATACAGTCTCacagtacacttt
ttttataagcaagtgtctgcctcTTGGTCAGGCTCAAGCATGCTTAAGCT
TTCAAAACATCCAGGCATAgcatatgcttattatatgcttataaattaTT
ATGCTCTTGATTCACCCAAcccaattttttataaaattttgctaACACTC
GATTCAAattaggaaatctgcaaatctgagcctttgTATGCTtttaagcg
ttatgcttataataaaTATATGTATGTGATTATCATATTACAGACTTGTG
GCTTTAAATTTTTCCTGATGCTTTCTTTCCCAAAACTTGAAAATAGTGTT
ATTTGTATTAGACTGGGTTAGCCTGGTTTTTACTTAATCTTATGTATGAA
CATGGGAATTGAAGTCATTCTCTTTTATTATCGACCGATGTCGAGCTTTA
TGCAAGCTAATGGTGTTTGATTTTAAGATATTACCATTATCACAGGTTCA
ATCATATGCGAACGTACTACCATTCCAAACATTCTTTCTACCCTTCTTTA
GAATTGGGTTGGTCTTATCCTTGTGATGTGTGGAGTTGCGGATGTATCAT
CTTTGAATTATACACCGGTGATGCCCTTTTTCGTGTAAGTTCCTTCATAC
AGGAGACGTTAgattgtatttattttcaaatttaattcttaTTTCGAAAT
CTAGTTCTATCTATCTCTAATTTTCTTAGATTTGTATCGTGAGAAATTGT
CTTAGTTCTACTCGGTCAAATTGGGTggttgggcttttccagaaaaatat
ttaatatgGGGGGGTGGAGaatattaactttttttggaaatttacaatcg
aaattacccctaaacaaagcaagtttacccccccccccgNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGTGGCCTCTTTCCTCCA
AAGAATCActtagtaggcatgatgtcttgtactaactgcttgaccccccc
ccctgcttaaaGTGTTAAAAAGGTTAAGATGATTTGACCCTTTGTTATTT
GTAACGTTTTCCTGacttttcaaagagaaaataggATTTGTTGGTCAGAG
ACCAACAAAAAGtattaaattctaaaaatgaaacataaatatttttacaa
tacAAATCATCTATCCACAGACATGtgtttcgtccttcccaggactcatc
AGTGCGGCTCGGGTAAGCGTGCATAGACTGActgttgtcaccagagtgct
caGAGCACTAAGTGTTGAGCTTcgcataatcgcttgtggtgaaCGGAGAA
GCAGAGCTTGCTCCTCAAAACAAATCATACATTTTTCTGTTCCTCTTTTA
GACGCACGATAATTTGGAACACTTAGCCATGATGGAGAGAATATTAGGGA
AATTAccaaagaaaatgatgaaagCTTCTGAGTGAGTGAATCTCATGTAA
TTTTACGTTTACGTGAAGGCCGACATCTTCTTCCATTTACTTACACAGCA
TATTTAAACAAAAGGAAAAGAACAGCTCTCTCCCTTTTCGGGAGAATATG
AAACATTatgagaaattctattgtttttgttTCGTCAGCATAGAGAAATA
TTATAAACATCGAGTCTAAGGCAAATACGTACATGCGGTTTCTCAACGGA
TTCATTATGCTTAATTTCCATACTAAAAATTACAGTCTTGtcgttttatt
gatttttgtcATATCTATGTAAATTTTTATTCTTGTCCGTATAAAAGTTT
TGGGGTACTGTAATTTATAAGGTCATGAGctgtttttctaattttgtcgt
ttattttctcgattttttttcaGTAAACAAAAATACTTTCGTGACGGAGT
ATTGGATTGGGATGAGAAGGACCATAACGGACAATTTGTCAAAACGAACT
GTGTTCCATTGAGAGTAAGTTTTTCAAATCCTTAACTgctctttttgctt
ttttttgcaAGAGAAACCTTTTTTCAATAGACTTGCTTCGATTTACTTTA
AGGGACTGCGTAAGATATTacctttttagaaattttcaataacacgtttt
ttataagaacagaccttataatgtaagaacataagactgTAAAATGACCA
AAATTAACACGAACaagttttaagaacattttcttataatttcttaggaa
atcgcACAAAATATGGTGAAGATgataacattttaaaaacatttttaggc
ttaacattttcattttctagaaGAATCTAACCCTGATCAAATACAATATA
CAGTGAATGTTTTGTAGTATCGTTGGGTTTTCAAATTGATCATGAAAAAG
CGAAAATATCCAGTTTTCCTTCAGTTGGAGTCAATTGTATAAAAtctcta
ttttttttctcaggagACGTTTAACTCGGACGACCGCCGTGCTACAGAAG
AGCTTTATCATCTTGTCGACCGTCTATTAACTTACACACCTGAAGATCGG
CTGACGGCAAAAGAAGCTCTCTCTCATCCGTTCTTCAGTGAGGATATCTC
TGCAAGAAAGAAGTGATATCACGTTTTTTAttcacaagaaaaatattttc
gaatcaCTTTTGTTGTAAAGAATTGTAAATACAGTATAGTATGCCTCCCA
TTCAATTTCTTTTATAGTTGAGTAGCTCACATGcagagtacacgtttttt
ttttttataagaacacctaagatttggctgagcctggatgtgcttatttt
tttagcaattttcagcctaaaatgttcttaaatgcgttcttaatttttca
tcagactactctaaatcgataatatgatacaaaataaagagcactttaAT
TTGGcacaatttggacaatatttgactctcgacttttgaagatccacccc
taaattcggttaaaactgcttaaaaagaggaaaaaattgtagtttcttgt
catttttTTCCAAACTGAGGCTGGGCATGTTCTTAAcatgttcttaattt
ttcgacgaatttcagcctatatgttcttataaactaggttctaataaaaa
aaaaacgtgtaccttggTAGAAGATTTTCTATAGCTTTGTGGGTTTTGCA
GACCTTGCATAAGTGCAACATTCTTGTACGGTTCAGGTCGAAATAAAACT
ACAGTTTactttcgctaattcgaactagagcgggaaattttatttgttcg
aattacagagagacttgaattatagaaagtattttaagaaggTTTCTCCT
GTACGGGAACTGGAATTAAGTTCGAACTATCTAGAAAGATTCGTCAAATG
TTAaagacttttcacaaaaaaattttctttcacttGAAGTGGTCTGACGG
TACTTTTTTTCGGTACACGCTGCATATCCTCTTTATTGTTTCACAACTTC
GTTCCCTGTTTATTTTCCTCTAAAGAATcttgcattgtaacacgcatgcg
taatttgtcgttcttttaaaccatatgtagttaattcccgtgataaaaaA
AAGGAATGAATTCGTAGGGGTGGAAATTTGTCGTTccatttgtctatttt
tagtaaatgtagGATCATTTAGATAAACCCTCTCCTGCGTCTTATAAGCT
TTTTGATACTTACTGATAGCACCAGATAATTCCCTGGCGTCTATCATCAA
CGTAAATAAAGCTTGGACTACACGGGAACGAGGTTGATTGTTtcataaaa
gtaaaatatttctttgtcCTCATGTTCCAAGATccttttttaaattatat
agaaaacttgtttgtttttataCTACGTTTTTCATACTACTATTTTCAAT
ACAATGAAATGAGTGTATTATATTATACATTGTTatattgaatgaatgaa
taattAGTCCAAAATATATTTATCCAAAACAAATCGCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036407XLOC_036407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057750-exon-scaffold_298-1491911889:348112..348416TCONS_00057750-exon-scaffold_298-1491911889:348112..348416Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:348112..348416TCONS_00057750-exon-scaffold_298-1510915933:348112..348416Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:348112..348416TCONS_00057750-exon-scaffold_298-1575043694:348112..348416Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:352897..352957TCONS_00057750-exon-scaffold_298-1491911889:352897..352957Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:352897..352957TCONS_00057750-exon-scaffold_298-1510915933:352897..352957Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:352897..352957TCONS_00057750-exon-scaffold_298-1575043694:352897..352957Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:353526..353645TCONS_00057750-exon-scaffold_298-1491911889:353526..353645Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:353526..353645TCONS_00057750-exon-scaffold_298-1510915933:353526..353645Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:353526..353645TCONS_00057750-exon-scaffold_298-1575043694:353526..353645Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:354146..354236TCONS_00057750-exon-scaffold_298-1491911889:354146..354236Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:354146..354236TCONS_00057750-exon-scaffold_298-1510915933:354146..354236Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:354146..354236TCONS_00057750-exon-scaffold_298-1575043694:354146..354236Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:354559..354634TCONS_00057750-exon-scaffold_298-1491911889:354559..354634Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:354559..354634TCONS_00057750-exon-scaffold_298-1510915933:354559..354634Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:354559..354634TCONS_00057750-exon-scaffold_298-1575043694:354559..354634Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:354862..354956TCONS_00057750-exon-scaffold_298-1491911889:354862..354956Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:354862..354956TCONS_00057750-exon-scaffold_298-1510915933:354862..354956Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:354862..354956TCONS_00057750-exon-scaffold_298-1575043694:354862..354956Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:355302..355431TCONS_00057750-exon-scaffold_298-1491911889:355302..355431Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:355302..355431TCONS_00057750-exon-scaffold_298-1510915933:355302..355431Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:355302..355431TCONS_00057750-exon-scaffold_298-1575043694:355302..355431Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:355963..356045TCONS_00057750-exon-scaffold_298-1491911889:355963..356045Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:355963..356045TCONS_00057750-exon-scaffold_298-1510915933:355963..356045Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:355963..356045TCONS_00057750-exon-scaffold_298-1575043694:355963..356045Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:357713..357792TCONS_00057750-exon-scaffold_298-1491911889:357713..357792Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:357713..357792TCONS_00057750-exon-scaffold_298-1510915933:357713..357792Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:357713..357792TCONS_00057750-exon-scaffold_298-1575043694:357713..357792Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:358185..358275TCONS_00057750-exon-scaffold_298-1491911889:358185..358275Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:358185..358275TCONS_00057750-exon-scaffold_298-1510915933:358185..358275Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:358185..358275TCONS_00057750-exon-scaffold_298-1575043694:358185..358275Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1491911889:358725..360202TCONS_00057750-exon-scaffold_298-1491911889:358725..360202Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1510915933:358725..360202TCONS_00057750-exon-scaffold_298-1510915933:358725..360202Clytia hemisphaericaexon
TCONS_00057750-exon-scaffold_298-1575043694:358725..360202TCONS_00057750-exon-scaffold_298-1575043694:358725..360202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:348112..360202 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.54158	1.69076	0.760125	0.530355	7.26883	4.74937	2.25024	3.61508	5.80977	1.58104	5.07252	9.28525	3.95215	4.14678	3.46096	0.952986	1.68929	0.827342	2.60164	3.04506	9.06899	8.7208	1.27598	1.78316	2.40315	3.65916	1.66467	4.38798	1.43305	1.07612
Blast
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BLAST of TCONS_00057750 vs. Swiss-Prot (Human)
Match: CLK2 (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 1.340e-114
Identity = 174/318 (54.72%), Postives = 231/318 (72.64%), Query Frame = 2 
Query:  308 KIYGLLGEGTFGKVLECHD-RKHDRQVAIKIIKNKKKYREAAKLEIEVFKQLRKNDPDGKHNCIKCYGTFRHGGHVCLIFPKLGKSVFEFMKDNDYQPYTLKQVQHIAYQLLDSVCFLHKIKLTHTDLKPENMLFVNSSSRSIWSENARQNIKILDHCDVQLIDFGSATFEHEHHSRIVSTRHYRAPEVILELGWSYPCDVWSCGCIIFELYTGDALFRTHDNLEHLAMMERILGKLPKKMMKASDKQKYFRDGVLDWDEKDHNGQFVKTNCVPLRETFNSDDRRATEELYHLVDRLLTYTPEDRLTAKEALSHPFFS 1258
            +I   LGEGTFG+V++C D R+   +VA+KIIKN +KY+EAA+LEI V +++ + DPD K+ C++ +  F + GH+C+ F  LG S F+F+KDN+Y PY + QV+H+A+QL  +V FLH  KLTHTDLKPEN+LFVNS     ++   +++ + +    V+++DFGSATF+HEHHS IVSTRHYRAPEVILELGWS PCDVWS GCIIFE Y G  LF+THDN EHLAMMERILG +P +M++ + KQKYF  G LDWDE    G++V+ NC PLR    S+      +L+ L++ +L Y P  RLT  EAL HPFF+
Sbjct:  164 EIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNLEKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQTHDNREHLAMMERILGPIPSRMIRKTRKQKYFYRGRLDWDENTSAGRYVRENCKPLRRYLTSEAEEH-HQLFDLIESMLEYEPAKRLTLGEALQHPFFA 480
The following BLAST results are available for this feature:
BLAST of TCONS_00057750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLK21.340e-11454.72Dual specificity protein kinase CLK2 OS=Homo sapie... [more]
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