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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057754 ID=TCONS_00057754|Name=TCONS_00057754|organism=Clytia hemisphaerica|type=transcript|length=1403bp
GAAGAAATTGTTATCACCAGCTCATAACTCAAAGTTCTGTACCTTATAAA
ATACCCTAAATATACTAAAATTCAtgaattgtaaaaattttcccttttaa
AAAATATAGCAATATGTAAAAGTTaacggacagttgcgagtacaacatga
gaaatattttacgagttccgagattttttcGTACAATATTTTCTGAGCCT
TtactttaggcgaggaaaatatacggaaaaaatCCGGAGcgagtgaaata
tttctatATTGTACGAGGTCTGATAACTgctttatcggtgacccaaaaat
gCACTTTGTCTTTGTTTTGGGAAAAAgagcagggcacttttgtagcaaag
tgacgttagattgcttctaccgctacaatgtaAAAACATAtctcgtcaat
ttatattttgtacatgtaaaatacaagatatattgtactctttttaacca
atcagattgcagatattttttgatcGCCGATAAATTAATCATTCCCATGG
TGTTCACGCCATGATCATTCCtcgaaatatcaaaatttcacTCTCTAAAA
GACCAAGCGTAAACCAAAAAAACATAATGGCAAATGTCATCTCTTGTCTG
TGTTtacgagaagaaaaaaaaacccaaaaaaatttttatggAATAGGCGA
GTGTGACGgctcttgaaaatcgaattacaAAACGTCAAGTGTATTATTGA
CATTTTGTAGCTTTTGTCAACGAATTTCGAAATATAGATCTAACCTGTTG
TCGAAGATGCGAGCTCTACTTCCGAGATAATTATCAATCCCCAAACTTCA
TATCTAGATTTTACCTAATTTTATGTCGGATGGACATGAACTACTAACAA
CCTCCCCCgaaagaaattttaataaagTAATTTCAGTTAGTGTTTCTTCT
TCTTCGGTCGTTGCTTAGCAGCTTGTTTAGGTTCATAAATTCCCAACCCA
ATGATCGCTTCACGAGCCACGTTATTGATTAAGCGGAAACGATCAGGACC
TAAGAGAATTCCACCATACCATCGACTAACTACAATAACAATATTTTTCA
CATCCATAATTTGTAGTAAATGTAAGAGGCGGCCGCCCGCATTCACTTCG
CCATCATCTGCGTAATCTTGTATAAAAGAAGTCTCATTCACACCAACTAG
CCTGTACGCTACAATATTATGACTAGCCtgtgaaacttttttattctgtt
TTAGTTTCTTCAGAACAGCTttaatagtgagTGTATGAACCACGGCTGAA
TGTCCTTGGAAAGTACTTTTCTTCAACGTGATCGTGTCGCTACTGTGAAT
TTCAGGGACTGTTTCATCCATAACCTGAGTCGAAgtctcttcttcttttt
gtgGTACGTCTTGCGTTTCGATTTGTTCGCTTGCATCCTCCTCACGCATA
AGG Run BLAST on NCBI transcript from alignment at scaffold_298:371822..373377+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057754 ID=TCONS_00057754|Name=TCONS_00057754|organism=Clytia hemisphaerica|type=transcript|length=1556bp|location=Sequence derived from alignment at scaffold_298:371822..373377+ (Clytia hemisphaerica)
GAAGAAATTGTTATCACCAGCTCATAACTCAAAGTTCTGTACCTTATAAA
ATACCCTAAATATACTAAAATTCAtgaattgtaaaaattttcccttttaa
AAAATATAGCAATATGTAAAAGTTaacggacagttgcgagtacaacatga
gaaatattttacgagttccgagattttttcGTACAATATTTTCTGAGCCT
TtactttaggcgaggaaaatatacggaaaaaatCCGGAGcgagtgaaata
tttctatATTGTACGAGGTCTGATAACTgctttatcggtgacccaaaaat
gCACTTTGTCTTTGTTTTGGGAAAAAgagcagggcacttttgtagcaaag
tgacgttagattgcttctaccgctacaatgtaAAAACATAtctcgtcaat
ttatattttgtacatgtaaaatacaagatatattgtactctttttaacca
atcagattgcagatattttttgatcGCCGATAAATTAATCATTCCCATGG
TGTTCACGCCATGATCATTCCtcgaaatatcaaaatttcacTCTCTAAAA
GACCAAGCGTAAACCAAAAAAACATAATGGCAAATGTCATCTCTTGTCTG
TGTTtacgagaagaaaaaaaaacccaaaaaaatttttatggAATAGGCGA
GTGTGACGgctcttgaaaatcgaattacaAAACGTCAAGTGTATTATTGA
CATTTTGTAGCTTTTGTCAACGAATTTCGAAATATAGATCTAACCTGTTG
TCGAAGATGCGAGCTCTACTTCCGAGATAATTATCAATCCCCAAACTTCA
TATCTAGATTTTACCTAATTTTATGTCGGATGGACATGAACTACTAACAA
CCTCCCCCgaaagaaattttaataaagTAATTTCAGTTAGTGTTTCTTCT
TCTTCGGTCGTTGCTTAGCAGCTTGTTTAGGTTCATAAATTCCCAACCCA
ATGATCGCTTCACGAGCCACGTTATTGATTAAGCGGAAACGATCAGGACC
TAAGAGAATTCCACCATACCATCGACTAACTACAATAACAATATTTTTCA
CATCCATAATTTGTAGTAAATGTAAGAGGCGGCCGCCCGCATTCACTTCG
CCATCATCTGCGTAATCTTGTATAAAAGAAGTCTCATTCACACCAACTAG
CCTGTACGCTACAATATTATGACTAGCCtgtgaaacttttttattctgtt
TTAGTTTCTTCAGAACAGCTttaatagtgaggttaagtaaatcggtaaaa
tcacgacgacgaacgaaaatttaacaggctagtgagtttcaaccaatcaa
atttcgtattttCACTAGCCTTATACATTTTTCGTCCGTCGTCGTGATTA
TCCTTGTATGCTTAACCTCACTAATATCAGTAAGTGTATGAACCACGGCT
GAATGTCCTTGGAAAGTACTTTTCTTCAACGTGATCGTGTCGCTACTGTG
AATTTCAGGGACTGTTTCATCCATAACCTGAGTCGAAgtctcttcttctt
tttgtgGTACGTCTTGCGTTTCGATTTGTTCGCTTGCATCCTCCTCACGC
ATAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057754-exon-scaffold_298-1491911889:371822..373052 | TCONS_00057754-exon-scaffold_298-1491911889:371822..373052 | Clytia hemisphaerica | exon |
| TCONS_00057754-exon-scaffold_298-1510915933:371822..373052 | TCONS_00057754-exon-scaffold_298-1510915933:371822..373052 | Clytia hemisphaerica | exon |
| TCONS_00057754-exon-scaffold_298-1575043694:371822..373052 | TCONS_00057754-exon-scaffold_298-1575043694:371822..373052 | Clytia hemisphaerica | exon |
| TCONS_00057754-exon-scaffold_298-1491911889:373206..373377 | TCONS_00057754-exon-scaffold_298-1491911889:373206..373377 | Clytia hemisphaerica | exon |
| TCONS_00057754-exon-scaffold_298-1510915933:373206..373377 | TCONS_00057754-exon-scaffold_298-1510915933:373206..373377 | Clytia hemisphaerica | exon |
| TCONS_00057754-exon-scaffold_298-1575043694:373206..373377 | TCONS_00057754-exon-scaffold_298-1575043694:373206..373377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:371822..373377 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057754 vs. Swiss-Prot (Human)
Match: IMPCT (Protein IMPACT OS=Homo sapiens GN=IMPACT PE=1 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 8.108e-31 Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = -2
Query: 950 VPEIHSSDTITLKKSTFQGHSA-VVHTLTIXXXXXXXXXXXXXXXASHNIVAYRLVGVNETSFIQDYADDGEVNAGGRLLHLLQIMDVKNIVIVVSRWYGGILLGPDRFRLINNVAREAII 1309
+P I IT ++STFQ H A VV +K VL KL +NKK++ A+HNI AYR+ ++ +F+QD DDGE AGGRLLHL++I++VKN+++VVSRWYGGILLGPDRF+ INN AR ++
Sbjct: 170 LPPIDHGIPITDRRSTFQAHLAPVVCPKQVKMVLSKLYENKKIASATHNIYAYRIYCEDKQTFLQDCEDDGETAAGGRLLHLMEILNVKNVMVVVSRWYGGILLGPDRFKHINNCARNILV 290
The following BLAST results are available for this feature:
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