|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057757 ID=TCONS_00057757|Name=TCONS_00057757|organism=Clytia hemisphaerica|type=transcript|length=2001bpRun BLAST on NCBI transcript from alignment at scaffold_298:33200..59728- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057757 ID=TCONS_00057757|Name=TCONS_00057757|organism=Clytia hemisphaerica|type=transcript|length=26529bp|location=Sequence derived from alignment at scaffold_298:33200..59728- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057757 vs. Swiss-Prot (Human)
Match: ZN665 (Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2) HSP 1 Score: 302.753 bits (774), Expect = 1.313e-92 Identity = 202/541 (37.34%), Postives = 288/541 (53.23%), Query Frame = -2
Query: 399 KAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLTVHQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQKTVHESVKAFKCQECGNCFFTEINLKRHQKTVHQGVKAFKCQECSKCFAEKKNLTSHQRTVHQGMKPFLCQECGKSFGQRTNLTSHQRTVHEGVKAFKCQECDKSFTRKSNLKVHQKTVHQGVKAFKCQECSKCFGQNTDLTSHQRTVHQGMKPFLCQECGKSFGKKTNLTSHQRTVHEGVKAFKCQECG*FFSTKSNLKKQQRTVH--EKAF*VSEI*KHF--WKEMFVKET----SKNFEFHWCGKLLMW*VFLSIVHRHVKRKFKKDRMFQCLKCVANLIKIKSYLRCLFTL*IRIFLEKHSNFQANFSP-KLSIIGSMFLPKNFHQGT*KNL*ISLV*KKSKRVKAFQCQECGKSFGHNSALTSHQRTVHEGIKAFGRQECGKYFVE*RNLTLH 1994
K ++C ECG+ F+ L H+ +H G P++C +CGK+F +SNLT+HQ+ +H G K + C E GK F Q +NL HQR +H G KP++C ECGK F + LT+HQ +H G K +KC+EC KCF + S L SH++ +H K +KC ECG F +L HQ T+H G K +KC EC K F L H+R +H G KP+ C ECGK+F +NLT HQ +H G K FKC EC K FT+ S+L H++ +H G K ++C EC K F + LT+HQ +H G KP+ C +CGK F + ++L SH R +H G K +KC ECG FS S L + R VH EK + +E K F + + +T K ++ + CGK+ +L+I +R ++ ++C +C + L H P K + G +F +N H + + K ++C ECGK+F S LT+H VH G K + +CGK F + NL H
Sbjct: 111 KHYKCDECGKVFSQNSRLTSHK-RIHTGEKPYQCNKCGKAFTVRSNLTIHQV-IHTGEKPYKCNECGKVFSQPSNLAGHQR-IHTGEKPYKCNECGKAFRAHSKLTTHQ-VIHTGEKPYKCKECGKCFTQNSH-----LASHRR-IHTGEKPYKCNECGKAFSVRSSLTTHQ-TIHTGEKPYKCNECGKVFRHNSYLAKHRR-IHTGEKPYKCNECGKAFSMHSNLTKHQ-IIHTGEKPFKCNECVKVFTQYSHLANHRR-IHTGEKPYRCDECGKAFSVRSSLTTHQ-AIHTGEKPYKCNDCGKVFTQNSHLASH-RGIHSGEKPYKCDECGKAFSQTSQLARHWR-VHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAI----HQRIHTGEKPYKCNECGKAFS-------------VHSNLATHQVIHTGEKPYKCNECGKVFT-QNSHLANHRRIHTG--------EKPYRCNECGKAFSVRSTLTTHM-AVHTGDKPYKCNQCGKVFTQNSNLAKH 607 HSP 2 Score: 278.1 bits (710), Expect = 2.527e-83 Identity = 155/347 (44.67%), Postives = 210/347 (60.52%), Query Frame = -2
Query: 954 KAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLTVHQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQKTVHESVKAFKCQECGNCFFTEINLKRHQKTVHQGVKAFKCQECSKCFAEKKNLTSHQRTVHQGMKPFLCQECGKSFGQRTNLTSHQRTVHEGVKAFKCQECDKSFTRKSNLKVHQKTVHQGVKAFKCQECSKCFGQNTDLTSHQRTVHQGMKPFLCQECGKSFGKKTNLTSHQRTVHEGVKAFKCQECG*FFSTKSNLKKQQR 1994
K ++C ECG+ F L H+ +H G P++C ECGK+F SNLT HQ+ +H G K F C E K F Q ++L +H+R +H G KP++C ECGK F +++LT+HQ +H G K +KC +C K F + S L SH + +H K +KC ECG F L RH + VH G K +KC EC K F+ +LT HQ T+H G KP+ C +CGK F + L HQR +H G K +KC EC K+F+ SNL HQ +H G K +KC EC K F QN+ L +H+R +H G KP+ C ECGK+F ++ LT+H VH G K +KC +CG F+ SNL K +R
Sbjct: 279 KPYKCNECGKVFRHNSYLAKHR-RIHTGEKPYKCNECGKAFSMHSNLTKHQI-IHTGEKPFKCNECVKVFTQYSHLANHRR-IHTGEKPYRCDECGKAFSVRSSLTTHQ-AIHTGEKPYKCNDCGKVFTQNSH-----LASH-RGIHSGEKPYKCDECGKAFSQTSQLARHWR-VHTGEKPYKCNECGKAFSVHSSLTIHQ-TIHTGQKPYKCNDCGKVFRHNSYLAIHQR-IHTGEKPYKCNECGKAFSVHSNLATHQ-VIHTGEKPYKCNECGKVFTQNSHLANHRR-IHTGEKPYRCNECGKAFSVRSTLTTHM-AVHTGDKPYKCNQCGKVFTQNSNLAKHRR 609 HSP 3 Score: 249.21 bits (635), Expect = 1.051e-72 Identity = 138/323 (42.72%), Postives = 196/323 (60.68%), Query Frame = -2
Query: 1026 KAFECQECGESFATKRNLVMHQVTVHEGINPFECQECGKSFGKKSNLTLHQLTVHQGIKAFTCEESGKSFGQKANLTSHQRTVHGGVKPFQCQECGKTFGQKANLTSHQKTVHQGIKAFKCQECSKCFAEKSFRRKTTLTSHQKTVHESVKAFKCQECGNCFFTEINLKRHQKTVHQGVKAFKCQECSKCFAEKKNLTSHQRTVHQGMKPFLCQECGKSFGQRTNLTSHQRTVHEGVKAFKCQECDKSFTRKSNLKVHQKTVHQGVKAFKCQECSKCFGQNTDLTSHQRTVHQGMKPFLCQECGKSFGKKTNLTSHQRTVHEG 1994
K ++C ECG++F+ NL HQ+ +H G PF+C EC K F + S+L H+ +H G K + C+E GK+F +++LT+HQ +H G KP++C +CGK F Q ++L SH + +H G K +KC EC K F++ S L H + VH K +KC ECG F +L HQ T+H G K +KC +C K F L HQR +H G KP+ C ECGK+F +NL +HQ +H G K +KC EC K FT+ S+L H++ +H G K ++C EC K F + LT+H VH G KP+ C +CGK F + +NL H+R +H G
Sbjct: 307 KPYKCNECGKAFSMHSNLTKHQI-IHTGEKPFKCNECVKVFTQYSHLANHR-RIHTGEKPYRCDECGKAFSVRSSLTTHQ-AIHTGEKPYKCNDCGKVFTQNSHLASH-RGIHSGEKPYKCDECGKAFSQTS-----QLARHWR-VHTGEKPYKCNECGKAFSVHSSLTIHQ-TIHTGQKPYKCNDCGKVFRHNSYLAIHQR-IHTGEKPYKCNECGKAFSVHSNLATHQ-VIHTGEKPYKCNECGKVFTQNSHLANHRR-IHTGEKPYRCNECGKAFSVRSTLTTHM-AVHTGDKPYKCNQCGKVFTQNSNLAKHRR-IHSG 613 HSP 4 Score: 206.838 bits (525), Expect = 1.715e-57 Identity = 154/455 (33.85%), Postives = 218/455 (47.91%), Query Frame = -2
Query: 399 QKTVHQGIKAFKCQECSKCFAE-----------------------KSFRRKTTLTSHQKTVHESVKAFKCQECGNCFFTEINLKRHQKTVHQGVKAFKCQECSKCFAEKKNLTSHQRTVHQGMKPFLCQECGKSFGQRTNLTSHQRTVHEGVKAFKCQECDKSFTRKSNLKVHQKTVHQGVKAFKCQECSKCFGQNTDLTSHQRTVHQGMKPFLCQECGKSFGKKTNLTSHQRTVHEGVKAFKCQECG*FFSTKSNLKKQQRT-VHEKAF*VSEI*KHF------WKEMFVKETSKNFEFHWCGKLLMW*VFLSIVHRHVKRKFKKDRMFQCLKCVANLIKIKSYLRCLFTL*IRIFLEKHSNFQANFSPK-LSIIGSMFLPKNFHQGT*KNL*ISLV*KKSKRVKAFQCQECGKSFGHNSALTSHQRTVHEGIKAFGRQECGKYFVE*RNLTLH 1670
+K+ + K +KC EC K F++ K+F ++ LT HQ +H K +KC ECG F NL HQ+ +H G K +KC EC K F LT+HQ +H G KP+ C+ECGK F Q ++L SH+R +H G K +KC EC K+F+ +S+L HQ T+H G K +KC EC K F N+ L H+R +H G KP+ C ECGK+F +NLT HQ +H G K FKC EC F+ S+L +R EK + E K F + K ++ + CGK+ L+ HR + K + +C K + ++ + R ++ N K S+ S+ + + H G K ++C +CGK F HNS L HQR +H G K + ECGK F NL H
Sbjct: 103 EKSPNNRGKHYKCDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQ-VIHTGEKPYKCNECGKVFSQPSNLAGHQR-IHTGEKPYKCNECGKAFRAHSKLTTHQ-VIHTGEKPYKCKECGKCFTQNSHLASHRR-IHTGEKPYKCNECGKAFSVRSSLTTHQ-TIHTGEKPYKCNECGKVFRHNSYLAKHRR-IHTGEKPYKCNECGKAFSMHSNLTKHQ-IIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLA-SHRGIHSGEKPYKCDECGKAFSQTSQLARHWR---------VHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQ----------------KPYKCNDCGKVFRHNSYLAIHQR-IHTGEKPYKCNECGKAFSVHSNLATH 523 The following BLAST results are available for this feature:
BLAST of TCONS_00057757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.