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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057771 ID=TCONS_00057771|Name=TCONS_00057771|organism=Clytia hemisphaerica|type=transcript|length=4916bp
CCNCAATAGACATTGTCTTGGCTTGTGGCCATTCCTTGTGGacaaatttc
attttcagtacGCCAAGTCACTTTGGCATCAACCGTTTGATAAATACAAT
CTCCCAAATGGACATTAAGTGGATTTTCAGCCACCTGGCTTATCAGTTCG
TTGACGTTCTTCTTTAGTTCAGCTCTCTCGCTGGAAACTTTCAATGCAAA
TGAAAGCtcgttgttttgattttgatcgaTGTTTTTCCTCGATCCAACTT
CGATATTTATCGAAGCTTTGCCATCGCTATTCACTTGATATTTCACGCTC
AAAGAATTCGCAAAACCAAACAGATTGTTAAATTTGGCTTCGAATAAAGa
agttatgtttttgtttccGTTATGAGGGAGTTGacatttccattgttttt
gtttttttaaaacaGACATTGAGATTTTCGCGATCTCTTTTCTTGGTATG
ATTCGGATGACGTTAACGCGTGCCTTCCGTGACGTCACAGTGGTTTGTCC
GTCAGTCACTTCGCACCAGTACTGTCCAATGTTTGAATTTCGTACGGATC
GAATGTTAAGGATACTGGATTGAGAGATGAGTTGTGCATTTGGTGAGGTG
TTTGCACGGAACCACCATTTGTACTTGAGCCGAGAAGTCGAAGACGTTGC
ATTGCACACAAACTCGATGTTTTCGCCACCGGGATATTTGACGTCATGAT
CGATTGGCTGTGTGTGGAATTTAATTGGATGAGCGACGCGAACTAACACC
TGGTTGGATGAAATTTTATTAGTGATCGTTTGACCATGACAAACGTAAAT
TCCTTGGTCACCTTTGCTCACAGAATCGATGCGTAGTTTGTAATCGTTTT
GTGAAGGAAGAAGCGTTCCATTTCGTGTCCATGAGTAAGAGACGCCAGCA
GGTCCATCAATGGTGCAATCTAATTCAAATCTTTCACCAAGGTATGCCAG
TTTCAACAGTGGCATTTGTTTGCTTAGGATGAGATCTTCGTTCTCACAGA
AAAACGTCCTTCGTTCGATAGTTCCTATCTCTTGTGTGAGGTCTTCACTG
ATTCTCATCAGTTGTGGCTTCGATATTTTGCTTGTTGTAACTCGGATTAA
GAGATTGTAAATAGCGTCGAAGGATTGGATGACTTCTTCGTAATGAAGCA
TTATTGGTTCGTAAAGTTGCTTCAAGACAATGATTTGTTCTTTGACGCAA
TCTTTGAAACCAAAACACGAAGCGCCAGCATCCTCCGCCATAACTCCTTC
ACTACTACGCTGCCAtctttgaatgacgtcattaacTGATTCCACGGATC
CTTTGTTGCTTGATTCGATTTCTTGCTGAAGACGTTGCATTGCTTTGACG
TTCATTCCGGTCAGTGTTTTATCAACAGGTCGAGTGATTTCATTGGTTCG
CATGTTAAGGATGTCTTTGTTCAAGTTTTGAGTGATTGTTTTGAGCATGT
TGAAACCTTCATTATAATAAGCGCAAGTATGGCTCCAATAAGTTGCATTC
CGTTTTTCCTCTACGATGGAGTTTCCAGCGAAAGAAACACTTCTTCGTCG
GCGTTTTTTACTAGCGAGCGGTGTGTATTCGACCGCTTCATGAACGATTG
TTTGGATGACGGATTGTAAAGAAACATCGAGTTGTTTTGTGTTGATGGCG
ATATCGAGCAAAGTTTGGTCTTGAGTATTGATATCTAGCATTGAGATTCT
CAAAGGAAGATTCGTCAATTCTGGTGAATATTGCACAATCTCAAACTCAA
CGCCCTTGATCAGAAGGGTGGACTTGCTTCCCACCACTAGAGATTTGATT
TGATTCAACTGTTTGTTAATGAATGATTGTGAACGCCCTAACTTTTCAAG
TGTGTTTTTGGCACGTTCCAAGATGGCTACCGAACGGTTTAATTTTAACA
CAGCTCTGTTCAGTCTGATTTGGGCGGTCCGCACGTCAATTTCTTTAGCG
CGCGCGATAGCCGAATGATTGTCGTATTGTAAAAAGACGTTTCTACTTGC
CTGGTCGATATCGTTTGATTGCTCAACAAATAGGCGCCTATGAGAGCTAC
ATTGTTCATTCTGTAAAACACATTTGACATCCTGCATGAAGACACATTCA
CTGGTTGGACAACATAGTTTAGCTTCACCATATCCTCTAGTAACTGTGAT
ATTCTTAAGATGACATTGTTCTACAAGCACATTCATATTCTCAACTTGTA
GTTTAGGTTGTAGACACACATAAGAGACATTACGTGAGACAGGGTATGTT
TTCCACGTCAAATCACACGCTCCATCTAACCAATCCATGAAGTCTTTCAC
ACCTTTGACAATCTGCAATGCTGACGTCACTGTTCCCAGTACTTGTGATG
TTTGCTCCAAACCAAGACTTTTGACATCCACACCAAACTGTTGAGCAATA
TCAATGCCACTCTTCATTATACTGACAACGCTGTTGGCCGCTTCCGCAAT
AGTCTCCGCATTGAATTCCTTCATCTTCAACAGAGACTCGATATTGGACG
CAATGCTTAAAACGTTCCTTCCAACAGCCAAACCTTTGGATAATGTTGAA
CCAATATCCTTTAGATTCACACCAAGGGATCCAGCAACATCATTCAAAGC
TTCAGTTAGCTCGCCTTTTATGTTTCCCCAATTTTTGAACAACGTTTGAC
CAAGTTTATCCACACTGGTCAAAAACTTCTCACCACTGCCAACCACCTTA
TCAAAATTAGTCAATGCTTCTTTAAAGCTATCACTATTTAATAAAGATTT
AAAGTCATCAATCAGTTGCTTGCCACTTCCTATGGTTCCAAGAGCTGAGT
CAGCGAATTTAAAGAAGGATTTTGCTGATTTGACCAGTTTGGTATCTAAG
TTGTATTTGTCAAGATTGATTCCTAGTTTGTCAGCAACACCTTGGACATC
TTTGTAAATGAGACTAACAAAGTTTGCAGTTTGATTAAAAATGATTGGAA
GTTCTTCTAATGCGAATTTGACAGGGTCATCTTCAAGTTTATCGAATGCG
TCATTTAAGGATTTTGAGAGTTCAGTGAATTTAGTGTATCGGTCAGCGAT
CGTATCAAGACCGGATGTAATATCTTTCAATAGTTTGTCAGTGCCTTCTC
CAAAGAGATCGGTCTTTTTGAAGACCTTGCCAGTGACCATTCCAAAGACG
CTTGTTACATTATTGACAACTGTGTTTACTTGAGAAGTTAAAGTTGAGAT
TTTACCAACGAGATTCTTGGCAACCTGTATTTTATCACCAACTGAACCAG
CACTTAACAATCTTTTGAATTCATTTCCAATGATAGAAGCTGTTTCACCA
ATTTGTTGGACATTTGTGACTGTCTCGCCGATACCTCCCGCTATCAGACT
CGTTTTGTTCAATATACCAGAAATCCCAGATGTTATTCCATCCAGCTTTG
TTCCAAACCCTCTCAGCCATTTCGGTGATATAGGTGAGTTCTTCAAAAGG
TCAGGAACAGCTTTCATCATGGAATTAACACCAGTGACAATATTTTGAAC
AGCCTTGACTCGATTCTCGATTGGTCCTTCAGTGAGATTATCAATATTTT
CCATAGTTTCTTGGAATGTCTTTTTAATCTTGTTCACCTCATCAAAAGCA
TCTGCGACATTGGACGAAAAGTTACCAGCACTCTCGATGAAAGAACCAAA
CTCGTCAACAAAgctttcaaatctttttgatattttcatcaaaTCGTTAT
TCCCGTCAAACAACAATCGAAAAATGTTGGAAGAATCGTTTCGAATGTCT
TGGATAAAATCAGAAGTGGTATGCAAAACATCAGCAACTTTGTTGAAGCC
TTCTTCATTGAATTCGATCCCCTCCAGCTTTCCAATCTCCTCTTTGATCC
CCTTAACTGATTGGTAAATACCGGCAGCAGATGTTGCTCCATCTTCAACC
TTGTCCAATATACCTTCCACCTTGATTGTAATATTCTTCAAACTTTTCCC
GATACCTCCAAGAACATCTGATGAGAAATCTTTACCAAAGATGCTAGTGA
AATCACAAGATTTGCAATGCTTTTTCATCAAACCTGATATATTCTTCAAT
ATGGCTCCACTCTCGAAtacaatttctttcaaatctgcAAACTTCTCCTT
TGCAAACTTGGGTGACACCAACAGAATCTCTCCAATATCGTAATTCTTTA
GATTCTCGACAAACTCTTTGGTCGAATCCGTCAATTTCCCAATTTTCTCT
ACAGGTCCCGATTGGATTTTATTGATAGTTGATGTGATAtctttgctgac
atcagcaagtTTTTTAACAGCGTTAGAGATATTTCCTATGAATCCTGAAA
CACCATTGGTCAATTCACCGAGATTGTCATCAATTCCTAGATCTACTCCA
ACCACATCCTGAATAGTCTTATCAAAGATGGAAGCTGAATGGCTCACACT
TTGAACCAGCTTGTCAGTCTTTCCAAGAGCATCATTGAGAATATTGAATT
TCTGTTGCCAAGGTgctttgagaattttttgataATCTTGTTGGATCCCT
CTGGTGATTCCTTGCATATTTCGAAAATCTTTGACAATCAATCCAGCACC
GTTCAACAATGTATCTGTCTTGTTGACCACAGTGGACAATTTTTGCGAAA
CATCCAACAAACTTCCACTGAATTTCCGGAACCAGCTTCCATTGACACCC
AACGTTACCAAGATATCCGATGATTGATCAAAAATCAAAGGAAGTGTTTT
CCCAATTGCATTCACACCTTTACCAATATTCTTCAATACTTCGATTCTCG
ATTCGATTGGTCCTTTAGTCACATTCTCCATATCTGCACCAATTTCACCG
AATAAATCCTTCACTTTGTTGACCGAATCGTATACTTCACCAGCTTTTGG
AAGAACCACTGAAGTTTTATTCAGAACACCACTCACTTTATGTACCAATC
CTTCAAAACCATTCTT Run BLAST on NCBI transcript from alignment at scaffold_298:192891..197993- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057771 ID=TCONS_00057771|Name=TCONS_00057771|organism=Clytia hemisphaerica|type=transcript|length=5103bp|location=Sequence derived from alignment at scaffold_298:192891..197993- (Clytia hemisphaerica)
CCNCAATAGACATTGTCTTGGCTTGTGGCCATTCCTTGTGGACAAATTTC
ATTTTCAGTACGCCAAGTCACTTTGGCATCAACCGTTTGATAAATACAAT
CTCCCAAATGGACATTAAGTGGATTTTCAGCCACCTGGCTTATCAGTTCG
TTGACGTTCTTCTTTAGTTCAGCTCTCTCGCTGGAAACTTTCAATGCAAA
TGAAAGCTCGTTGTTTTGATTTTGATCGATGTTTTTCCTCGATCCAACTT
CGATATTTATCGAAGCTTTGCCATCGCTATTCACTTGATATTTCACGCTC
AAAGAATTCGCAAAACCAAACAGATTGTTAAATTTGGCTTCGAATAAAGA
AGTTATGTTTTTGTTTCCGTTATGAGGGAGTTGACATTTCCATTGTTTTT
GTTTTTTTAAAACAGACATTGAGATTTTCGCGATCTCTTTTCTTGGTATG
ATTCGGATGACGTTAACGCGTGCCTTCCGTGACGTCACAGTGGTTTGTCC
GTCAGTCACTTCGCACCAGTACTGTCCAATGTTTGAATTTCGTACGGATC
GAATGTTAAGGATACTGGATTGAGAGATGAGTTGTGCATTTGGTGAGGTG
TTTGCACGGAACCACCATTTGTACTTGAGCCGAGAAGTCGAAGACGTTGC
ATTGCACACAAACTCGATGTTTTCGCCACCGGGATATTTGACGTCATGAT
CGATTGGCTGTGTGTGGAATTTAATTGGATGAGCGACGCGAACTAACACC
TGGTTGGATGAAATTTTATTAGTGATCGTTTGACCATGACAAACGTAAAT
TCCTTGGTCACCTTTGCTCACAGAATCGATGCGTAGTTTGTAATCGTTTT
GTGAAGGAAGAAGCGTTCCATTTCGTGTCCATGAGTAAGAGACGCCAGCA
GGTCCATCAATGGTGCAATCTAATTCAAATCTTTCACCAAGGTATGCCAG
TTTCAACAGTGGCATTTGTTTGCTTAGGATGAGATCTTCGTTCTCACAGA
AAAACGTCCTTCGTTCGATAGTTCCTATCTCTTGTGTGAGGTCTTCACTG
ATTCTCATCAGTTGTGGCTTCGATATTTTGCTTGTTGTAACTCGGATTAA
GAGATTGTAAATAGCGTCGAAGGATTGGATGACTTCTTCGTAATGAAGCA
TTATTGGTTCGTAAAGTTGCTTCAAGACAATGATTTGTTCTTTGACGCAA
TCTTTGAAACCAAAACACGAAGCGCCAGCATCCTCCGCCATAACTCCTTC
ACTACTACGCTGCCATCTTTGAATGACGTCATTAACTGATTCCACGGATC
CTTTGTTGCTTGATTCGATTTCTTGCTGAAGACGTTGCATTGCTTTGACG
TTCATTCCGGTCAGTGTTTTATCAACAGGTCGAGTGATTTCATTGGTTCG
CATGTTAAGGATGTCTTTGTTCAAGTTTTGAGTGATTGTTTTGAGCATGT
TGAAACCTTCATTATAATAAGCGCAAGTATGGCTCCAATAAGTTGCATTC
CGTTTTTCCTCTACGATGGAGTTTCCAGCGAAAGAAACACTTCTTCGTCG
GCGTTTTTTACTAGCGAGCGGTGTGTATTCGACCGCTTCATGAACGATTG
TTTGGATGACGGATTGTAAAGAAACATCGAGTTGTTTTGTGTTGATGGCG
ATATCGAGCAAAGTTTGGTCTTGAGTATTGATATCTAGCATTGAGATTCT
CAAAGGAAGATTCGTCAATTCTGGTGAATATTGCACAATCTCAAACTCAA
CGCCCTTGATCAGAAGGGTGGACTTGCTTCCCACCACTAGAGATTTGATT
TGATTCAACTGTTTGTTAATGAATGATTGTGAACGCCCTAACTTTTCAAG
TGTGTTTTTGGCACGTTCCAAGATGGCTACCGAACGGTTTAATTTTAACA
CAGCTCTGTTCAGTCTGATTTGGGCGGTCCGCACGTCAATTTCTTTAGCG
CGCGCGATAGCCGAATGATTGTCGTATTGTAAAAAGACGTTTCTACTTGC
CTGGTCGATATCGTTTGATTGCTCAACAAATAGGCGCCTATGAGAGCTAC
ATTGTTCATTCTGTAAAACACATTTGACATCCTGCATGAAGACACATTCA
CTGGTTGGACAACATAGTTTAGCTTCACCATATCCTCTAGTAACTGTGAT
ATTCTTAAGATGACATTGTTCTACAAGCACATTCATATTCTCAACTTGTA
GTTTAGGTTGTAGACAANACACATTCACTGGTTGGACAACATAGTTTAGC
TTCACCATATCCTCTAGTAACTGTGATATTCTTAAGATGACAGTGTTCTA
CAAGGACATTCATATTCTCAACTTGCAGTTTAGGTTGTAGACACACATAA
GAGACATTACGTGAGACAGGGTATGTTTTCCACGTCAAATCACACGCTCC
ATCTAACCAATCCATGAAGTCTTTCACACCTTTGACAATCTGCAATGCTG
ACGTCACTGTTCCCAGTACTTGTGATGTTTGCTCCAAACCAAGACTTTTG
ACATCCACACCAAACTGTTGAGCAATATCAATGCCACTCTTCATTATACT
GACAACGCTGTTGGCCGCTTCCGCAATAGTCTCCGCATTGAATTCCTTCA
TCTTCAACAGAGACTCGATATTGGACGCAATGCTTAAAACGTTCCTTCCA
ACAGCCAAACCTTTGGATAATGTTGAACCAATATCCTTTAGATTCACACC
AAGGGATCCAGCAACATCATTCAAAGCTTCAGTTAGCTCGCCTTTTATGT
TTCCCCAATTTTTGAACAACGTTTGACCAAGTTTATCCACACTGGTCAAA
AACTTCTCACCACTGCCAACCACCTTATCAAAATTAGTCAATGCTTCTTT
AAAGCTATCACTATTTAATAAAGATTTAAAGTCATCAATCAGTTGCTTGC
CACTTCCTATGGTTCCAAGAGCTGAGTCAGCGAATTTAAAGAAGGATTTT
GCTGATTTGACCAGTTTGGTATCTAAGTTGTATTTGTCAAGATTGATTCC
TAGTTTGTCAGCAACACCTTGGACATCTTTGTAAATGAGACTAACAAAGT
TTGCAGTTTGATTAAAAATGATTGGAAGTTCTTCTAATGCGAATTTGACA
GGGTCATCTTCAAGTTTATCGAATGCGTCATTTAAGGATTTTGAGAGTTC
AGTGAATTTAGTGTATCGGTCAGCGATCGTATCAAGACCGGATGTAATAT
CTTTCAATAGTTTGTCAGTGCCTTCTCCAAAGAGATCGGTCTTTTTGAAG
ACCTTGCCAGTGACCATTCCAAAGACGCTTGTTACATTATTGACAACTGT
GTTTACTTGAGAAGTTAAAGTTGAGATTTTACCAACGAGATTCTTGGCAA
CCTGTATTTTATCACCAACTGAACCAGCACTTAACAATCTTTTGAATTCA
TTTCCAATGATAGAAGCTGTTTCACCAATTTGTTGGACATTTGTANATCT
TTTGAATTCATTTCCAATGATAGAAGCTGTTTCACCAATTTGTTGAACAT
TTGTGACTGTCTCGCCGATACCTCCCGCTATCAGACTCGTTTTGTTCAAT
ATACCAGAAATCCCAGATGTTATTCCATCCAGCTTTGTTCCAAACCCTCT
CAGCCATTTCGGTGATATAGGTGAGTTCTTCAAAAGGTCAGGAACAGCTT
TCATCATGGAATTAACACCAGTGACAATATTTTGAACAGCCTTGACTCGA
TTCTCGATTGGTCCTTCAGTGAGATTATCAATATTTTCCATAGTTTCTTG
GAATGTCTTTTTAATCTTGTTCACCTCATCAAAAGCATCTGCGACATTGG
ACGAAAAGTTACCAGCACTCTCGATGAAAGAACCAAACTCGTCAACAAAG
CTTTCAAATCTTTTTGATATTTTCATCAAATCGTTATTCCCGTCAAACAA
CAATCGAAAAATGTTGGAAGAATCGTTTCGAATGTCTTGGATAAAATCAG
AAGTGGTATGCAAAACATCAGCAACTTTGTTGAAGCCTTCTTCATTGAAT
TCGATCCCCTCCAGCTTTCCAATCTCCTCTTTGATCCCCTTAACTGATTG
GTAAATACCGGCAGCAGATGTTGCTCCATCTTCAACCTTGTCCAATATAC
CTTCCACCTTGATTGTAATATTCTTCAAACTTTTCCCGATACCTCCAAGA
ACATCTGATGAGAAATCTTTACCAAAGATGCTAGTGAAATCACAAGATTT
GCAATGCTTTTTCATCAAACCTGATATATTCTTCAATATGGCTCCACTCT
CGAATACAATTTCTTTCAAATCTGCAAACTTCTCCTTTGCAAACTTGGGT
GACACCAACAGAATCTCTCCAATATCGTAATTCTTTAGATTCTCGACAAA
CTCTTTGGTCGAATCCGTCAATTTCCCAATTTTCTCTACAGGTCCCGATT
GGATTTTATTGATAGTTGATGTGATATCTTTGCTGACATCAGCAAGTTTT
TTAACAGCGTTAGAGATATTTCCTATGAATCCTGAAACACCATTGGTCAA
TTCACCGAGATTGTCATCAATTCCTAGATCTACTCCAACCACATCCTGAA
TAGTCTTATCAAAGATGGAAGCTGAATGGCTCACACTTTGAACCAGCTTG
TCAGTCTTTCCAAGAGCATCATTGAGAATATTGAATTTCTGTTGCCAAGG
TGCTTTGAGAATTTTTTGATAATCTTGTTGGATCCCTCTGGTGATTCCTT
GCATATTTCGAAAATCTTTGACAATCAATCCAGCACCGTTCAACAATGTA
TCTGTCTTGTTGACCACAGTGGACAATTTTTGCGAAACATCCAACAAACT
TCCACTGAATTTCCGGAACCAGCTTCCATTGACACCCAACGTTACCAAGA
TATCCGATGATTGATCAAAAATCAAAGGAAGTGTTTTCCCAATTGCATTC
ACACCTTTACCAATATTCTTCAATACTTCGATTCTCGATTCGATTGGTCC
TTTAGTCACATTCTCCATATCTGCACCAATTTCACCGAATAAATCCTTCA
CTTTGTTGACCGAATCGTATACTTCACCAGCTTTTGGAAGAACCACTGAA
GTTTTATTCAGAACACCACTCACTTTATGTACCAATCCTTCAAAACCATT
CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057771-exon-scaffold_298-1575043694:195788..197993 | TCONS_00057771-exon-scaffold_298-1575043694:195788..197993 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1575043694:194556..195660 | TCONS_00057771-exon-scaffold_298-1575043694:194556..195660 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1575043694:192891..194495 | TCONS_00057771-exon-scaffold_298-1575043694:192891..194495 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1510915933:195788..197993 | TCONS_00057771-exon-scaffold_298-1510915933:195788..197993 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1510915933:194556..195660 | TCONS_00057771-exon-scaffold_298-1510915933:194556..195660 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1510915933:192891..194495 | TCONS_00057771-exon-scaffold_298-1510915933:192891..194495 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1491911889:195788..197993 | TCONS_00057771-exon-scaffold_298-1491911889:195788..197993 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1491911889:194556..195660 | TCONS_00057771-exon-scaffold_298-1491911889:194556..195660 | Clytia hemisphaerica | exon |
| TCONS_00057771-exon-scaffold_298-1491911889:192891..194495 | TCONS_00057771-exon-scaffold_298-1491911889:192891..194495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:192891..197993 - |
Blast
The following BLAST results are available for this feature:
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