TCONS_00057774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057774
Unique NameTCONS_00057774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057774 ID=TCONS_00057774|Name=TCONS_00057774|organism=Clytia hemisphaerica|type=transcript|length=1812bp
ATAAGAAGAAAGGAATCATAGAAAACATTTCTTTTAAcatgaaagaaatt
tttgacaTCAAGGGATGGAGGATTGTTATTCTACTCGTTATCGTAGGGAT
GTTATGGTATTTGGGAGTGGGCTCCAGGCAGATGTTTCTCTCCTCTGCAA
TGAAGGAACCCCCCGATGAAGGGTCTTTCTCAATCGTCAAAGACATCAAA
GGAGAAGGTCagtgttttttttcatgataGTAAATTCTTATTGGcgtaaa
ataaataaacgtatgaaattttgtaaataatagTAATtgagctttttcag
aaaaaaattgaacatgggagggagtggaggatataacattttttggaaat
ttacgcCCAGGATGGCAGGTCTAACCCCCCCGtacaagcattagttgacc
cccCTAAACAGAGAAATTTTGTCCTccaaacaaggcaaattttgtagatt
tttcactaccccccatatcctccaccccccatgtacgaacattttctgga
aaagcccatttacgAGAAGAGATGATCAAAGAAATGGCAGAGTAGAAGAT
ttataatattgaaaataatatcCCAATGCAATCAttataaaataaacaat
aaacttAATGTTTGTTTTCGTCTCTCACAGAACCTTACATAACAATCAAG
ATGAAATGTTATTACCATGACAACCAAACCTATGGCGTCGCATGGCAACA
GTTGCTAAACAACACGAAGTGTCATCAACAATTATTCGACAAGTGTTTTA
CTGAACGTTCGATCGTTGGGCGACATGAGACACATGTTTTAACGTTTCAC
AGGATACAGGACATCAGACGTTGTGTATGTACTGATGTCAGTGAATGGTA
CGTCAACTCATGCCTTCGGTCAAAGGATGTTCATTGTTGTTTAGATCGTG
GAGTAAATTCAGTGAAATGTTATTCAGTGACGTAAACGATTATGGATACA
ACAAGATCTAGGAGTTAAGAGTCTGAAATCGTATCTATATATTCGGTACA
AATCGTtagaaaatctcaagaaaaatCATTGTGGAGCGAAAAACATTGAA
GAATCATTTACATCGACTACAAACGCCAGTACCAATTACATTCACCAAAT
ATACAGTAAAGCAAACGGTTCATCTAACAAGTCATAATTTTTAAGAGGCA
GATTTCTCCAAACAACCCAGATACCAAGCGACAGTTTTCAATTAGACGAA
TAGACGGATTTTCGAGACGTCATTTATCCTTCTTTGTCTCCTTATCGTCG
CTATTTTGTTgccgttgttgttgttgacggATTTGTCGTTGTTTGACGTC
AATCAAAGTTCGTGCAGCGCTACTCAGCCACATAACCTGAAAACACGACA
GAAGGGAAGACCGTTATACTCATCAGAatgaaagagagagagagaagaaG
GGAGGTAGCATTAGGGGACTTAAATACCTCTATTTCGGAAGATTGGACTT
GGTATTATAAATTTTGTCGAGAACAATATGTCCCCAATGACTTGAGGTAC
TTGAGCTAATCCATTCATATCAAACAAATAAATATTTCTAACAAGATATG
GTTTGATACCATTGTGAATTTTTCTCATGTGCGAGATTTTTGCTATGGAT
CGGtattcatttcaaatttctcgACAGAAATAAAAACTGAATTGATAGAT
CAGACAATACGAGAGTTTGTACAAGACGAAGAGTTCTTCGAGACCCGACC
AGATAAAGGAAGCAAAATTCCCAAGGCTGTAACAAAATAAGCTGGCTGAa
tgaaaataatagaaaggaagaaaaaaacacattttcacTTCTAAAGATGA
CAAATTATTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_298:248646..251639-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057774 ID=TCONS_00057774|Name=TCONS_00057774|organism=Clytia hemisphaerica|type=transcript|length=2994bp|location=Sequence derived from alignment at scaffold_298:248646..251639- (Clytia hemisphaerica)
ATAAGAAGAAAGGAATCATAGAAAACATTTCTTTTAACATGAAAGAAATT
TTTGACATCAAGGGATGGAGGATTGTTATTCTACTCGTTATCGGTGAGAA
TGAAACTTCAATGTCGGTCAAAATGGTCTCCACAGACCCGGTGTAATTTT
ATCAGCCAGTGGGGATAAAAATAACAAACCAAAATGTTTATTATGGCCGG
AGATTTGAATTTCATTGTTTTCTAGCCAGAAAATTCAGTGGAGATGGAAA
AAATAGCACAATATTTTGCAGTGCAGATTTGCTTATCTGATAATTTTCAG
CGGGGACAAAAATTTGAGGATAATTTTCCACTAGGGACGATATTTTGGCC
AATTTTTCCAGTGGGTCTATGAGAAGGGGGCGTATAAATAAATTCTAATT
TGTGCAGATTTTCTGAACACAAAAATTTGGAGACATTTCTTGAGCTTTGT
GAAGGTCTATAAGCGGTCATTAATTTACATTTTTGGATTTTAAAGTGTAG
TGCGAAAACCGGCCTGTTGAGTTGAGGTTATCTATCCTTCAAAAGAGCTT
TCTTTTTCAACAACCTCTTTTTGTCGTTTTTTAATAACTACAATAGAGTC
TTTTGTTCGACTGAACTTTCCAACTTTGCTTCCTGACGATTTTGAAGTCC
AGTGTAGCAAACTAAAGGGTTTTGCCATCTTGAAAATGTTCACTTTCGTT
TTCAAAAAGTAAATGAAAACACAAAAACAATAAAATATCGAAATCTCTTT
AAAATTCTTAAAGCTATAAGAATCACAAAACAAAACACTTCCCAACTTTT
AGAAAATATGTTTCTTTTTCACCAAAAAGATTAGTGGTATGGATTTGTTC
GTACTTAAGTCTGCCATATCACACAGGGCCACTTATCAGCGCCATCTACA
CGTTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGATGGCC
AAAATATTAAGAACAAGTTAAAACTTTTTGAGGCTTTGAGGACCCTAAAA
CACCCGATCTCTGGACCCGAAAATGGATAGAAATTCTCAAAAATGGCTAA
AATAAGAACACGTTAAGAATATTTTTAGGCTTAAAATCCAAAAAGCTAAG
AACATTCCAAGGCTTCAAAATTTTTGAACGTGTTATCTTGAACAAGCAAT
TAGTGGCCTGTGGTCTATTTAGTAACCTGCTGCAAATATTTTCAATATAT
TTTACAGTAGGGATGTTATGGTATTTGGGAGTGGGCTCCAGGCAGATGTT
TCTCTCCTCTGCAATGAAGGAACCCCCCGATGAAGGGTCTTTCTCAATCG
TCAAAGACATCAAAGGAGAAGGTCAGTGTTTTTTTTCATGATAGTAAATT
CTTATTGGCGTAAAATAAATAAACGTATGAAATTTTGTAAATAATAGTAA
TTGAGCTTTTTCAGAAAAAAATTGAACATGGGAGGGAGTGGAGGATATAA
CATTTTTTGGAAATTTACGCCCAGGATGGCAGGTCTAACCCCCCCGTACA
AGCATTAGTTGACCCCCCTAAACAGAGAAATTTTGTCCTCCAAACAAGGC
AAATTTTGTAGATTTTTCACTACCCCCCATATCCTCCACCCCCCATGTAC
GAACATTTTCTGGAAAAGCCCATTTACGAGAAGAGATGATCAAAGAAATG
GCAGAGTAGAAGATTTATAATATTGAAAATAATATCCCAATGCAATCATT
ATAAAATAAACAATAAACTTAATGTTTGTTTTCGTCTCTCACAGAACCTT
ACATAACAATCAAGATGAAATGTTATTACCATGACAACCAAACCTATGGC
GTCGCATGGCAACAGTTGCTAAACAACACGAAGTGTCATCAACAATTATT
CGACAAGTGTTTTACTGAACGTTCGATCGTTGGGCGACATGAGACACATG
TTTTAACGTTTCACAGGATACAGGACATCAGACGTTGTGTATGTACTGAT
GTCAGTGAATGGTACGTCAACTCATGCCTTCGGTCAAAGGATGTTCATTG
TTGTTTAGATCGTGGAGTAAATTCAGTGAAATGTTATTCAGTGACGTAAA
CGATTATGGATACAACAAGATCTAGGAGTTAAGAGTCTGAAATCGTATCT
ATATATTCGATACAAGATGGACATCAACGTGTCATTCAACCATGGATGAG
ATTGTTGATCGAGAATATCCAGGACACGTACAAATCGTTAGAAAATCTCA
AGAAAAATCATTGTGGAGCGAAAAACATTGAAGAATCATTTACATCGACT
ACAAACGCCAGTACCAATTACATTCACCAAATATACAGTAAAGCAAACGG
TTCATCTAACAAGTCATAATTTTTAAGAGGCAGATTTCTCCAAACAACCC
AGATACCAAGCGACAGTTTTCAATTAGACGAATAGACGGATTTTCGAGAC
GTCATTTATCCTTCTTTGTCTCCTTATCGTCGCTATTTTGTTGCCGTTGT
TGTTGTTGACGGATTTGTCGTTGTTTGACGTCAATCAAAGTTCGTGCAGC
GCTACTCAGCCACATAACCTGAAAACACGACAGAAGGGAAGACCGTTATA
CTCATCAGAATGAAAGAGAGAGAGAGAAGAAGGGAGGTAGCATTAGGGGA
CTTAAATACCTCTATTTCGGAAGATTGGACTTGGTATTATAAATTTTGTC
GAGAACAATATGTCCCCAATGACTTGAGGTACTTGAGCTAATCCATTCAT
ATCAAACAAATAAATATTTCTAACAAGATATGGTTTGATACCATTGTGAA
TTTTTCTCATGTGCGAGATTTTTGCTATGGATCGGTATTCATTTCAAATT
TCTCGACAGAAATAAAAACTGAATTGATAGATCAGACAATACGAGAGTTT
GTACAAGACGAAGAGTTCTTCGAGACCCGACCAGATAAAGGAAGCAAAAT
TCCCAAGGCTGTAACAAAATAAGCTGGCTGAATGAAAATAATAGAAAGGA
AGAAAAAAACACATTTTCACTTCTAAAGATGACAAATTATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036416XLOC_036416Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057774-exon-scaffold_298-1575043694:251547..251639TCONS_00057774-exon-scaffold_298-1575043694:251547..251639Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1575043694:249531..250432TCONS_00057774-exon-scaffold_298-1575043694:249531..250432Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1575043694:248646..249462TCONS_00057774-exon-scaffold_298-1575043694:248646..249462Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1510915933:251547..251639TCONS_00057774-exon-scaffold_298-1510915933:251547..251639Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1510915933:249531..250432TCONS_00057774-exon-scaffold_298-1510915933:249531..250432Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1510915933:248646..249462TCONS_00057774-exon-scaffold_298-1510915933:248646..249462Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1491911889:251547..251639TCONS_00057774-exon-scaffold_298-1491911889:251547..251639Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1491911889:249531..250432TCONS_00057774-exon-scaffold_298-1491911889:249531..250432Clytia hemisphaericaexon
TCONS_00057774-exon-scaffold_298-1491911889:248646..249462TCONS_00057774-exon-scaffold_298-1491911889:248646..249462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:248646..251639 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0899132	0	0	7.40041e-06	9.37087e-08	0.76934	0	0	0	0.121989	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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