TCONS_00057775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057775
Unique NameTCONS_00057775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057775 ID=TCONS_00057775|Name=TCONS_00057775|organism=Clytia hemisphaerica|type=transcript|length=1489bp
gaaaattcgaaaagtttCATTTCTGTAATCTAATAAGAAGAAAGGAATCA
TAGAAAACATTTCTTTTAAcatgaaagaaatttttgacaTCAAGGGATGG
AGGATTGTTATTCTACTCGTTATCGTAGGGATGTTATGGTATTTGGGAGT
GGGCTCCAGGCAGATGTTTCTCTCCTCTGCAATGAAGGAACCCCCCGATG
AAGGGTCTTTCTCAATCGTCAAAGACATCAAAGGAGAAGAACCTTACATA
ACAATCAAGATGAAATGTTATTACCATGACAACCAAACCTATGGCGTCGC
ATGGCAACAGTTGCTAAACAACACGAAGTGTCATCAACAATTATTCGACA
AGTGTTTTACTGAACGTTCGATCGTTGGGCGACATGAGACACATGTTTTA
ACGTTTCACAGGATACAGGACATCAGACGTTGTGTATGTACTGATGTCAG
TGAATGGTACGTCAACTCATGCCTTCGGTCAAAGGATGTTCATTGTTGTT
TAGATCGTGGAGTAAATTCAGTGAAATGTTATTCAGTGACGTAAACGATT
ATGGATACAACAAGATCTAGGAGTTAAGAGTCTGAAATCGTATCTATATA
TTCGATACAAGATGGACATCAACGTGTCATTCAACCATGGATGAGATTGT
TGATCGAGAATATCCAGGACACGTACAAATCGTtagaaaatctcaagaaa
aatCATTGTGGAGCGAAAAACATTGAAGAATCATTTACATCGACTACAAA
CGCCAGTACCAATTACATTCACCAAATATACAGTAAAGCAAACGGTTCAT
CTAACAAGTCATAATTTTTAAGAGGCAGATTTCTCCAAACAACCCAGATA
CCAAGCGACAGTTTTCAATTAGACGAATAGACGGATTTTCGAGACGTCAT
TTATCCTTCTTTGTCTCCTTATCGTCGCTATTTTGTTgccgttgttgttg
ttgacggATTTGTCGTTGTTTGACGTCAATCAAAGTTCGTGCAGCGCTAC
TCAGCCACATAACCTGAAAACACGACAGAAGGGAAGACCGTTATACTCAT
CAGAatgaaagagagagagagaagaaGGGAGGTAGCATTAGGGGACTTAA
ATACCTCTATTTCGGAAGATTGGACTTGGTATTATAAATTTTGTCGAGAA
CAATATGTCCCCAATGACTTGAGGTACTTGAGCTAATCCATTCATATCAA
ACAAATAAATATTTCTAACAAGATATGGTTTGATACCATTGTGAATTTTT
CTCATGTGCGAGATTTTTGCTATGGATCGGtattcatttcaaatttctcg
ACAGAAATAAAAACTGAATTGATAGATCAGACAATACGAGAGTTTGTACA
AGACGAAGAGTTCTTCGAGACCCGACCAGATAAAGGAAGCAAAATTCCCA
AGGCTGTAACAAAATAAGCTGGCTGAatgaaaataatagaaaggaagaaa
aaaacacattttcacTTCTAAAGATGACAAATTATTTCC
Run BLAST on NCBI

protein sequence of TCONS_00057775-protein

>TCONS_00057775-protein ID=TCONS_00057775-protein|Name=TCONS_00057775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKEIFDIKGWRIVILLVIVGMLWYLGVGSRQMFLSSAMKEPPDEGSFSIV
KDIKGEEPYITIKMKCYYHDNQTYGVAWQQLLNNTKCHQQLFDKCFTERS
IVGRHETHVLTFHRIQDIRRCVCTDVSEWYVNSCLRSKDVHCCLDRGVNS
VKCYSVT
Run BLAST on NCBI

transcript from alignment at scaffold_298:248646..251671-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057775 ID=TCONS_00057775|Name=TCONS_00057775|organism=Clytia hemisphaerica|type=transcript|length=3026bp|location=Sequence derived from alignment at scaffold_298:248646..251671- (Clytia hemisphaerica)
GAAAATTCGAAAAGTTTCATTTCTGTAATCTAATAAGAAGAAAGGAATCA
TAGAAAACATTTCTTTTAACATGAAAGAAATTTTTGACATCAAGGGATGG
AGGATTGTTATTCTACTCGTTATCGGTGAGAATGAAACTTCAATGTCGGT
CAAAATGGTCTCCACAGACCCGGTGTAATTTTATCAGCCAGTGGGGATAA
AAATAACAAACCAAAATGTTTATTATGGCCGGAGATTTGAATTTCATTGT
TTTCTAGCCAGAAAATTCAGTGGAGATGGAAAAAATAGCACAATATTTTG
CAGTGCAGATTTGCTTATCTGATAATTTTCAGCGGGGACAAAAATTTGAG
GATAATTTTCCACTAGGGACGATATTTTGGCCAATTTTTCCAGTGGGTCT
ATGAGAAGGGGGCGTATAAATAAATTCTAATTTGTGCAGATTTTCTGAAC
ACAAAAATTTGGAGACATTTCTTGAGCTTTGTGAAGGTCTATAAGCGGTC
ATTAATTTACATTTTTGGATTTTAAAGTGTAGTGCGAAAACCGGCCTGTT
GAGTTGAGGTTATCTATCCTTCAAAAGAGCTTTCTTTTTCAACAACCTCT
TTTTGTCGTTTTTTAATAACTACAATAGAGTCTTTTGTTCGACTGAACTT
TCCAACTTTGCTTCCTGACGATTTTGAAGTCCAGTGTAGCAAACTAAAGG
GTTTTGCCATCTTGAAAATGTTCACTTTCGTTTTCAAAAAGTAAATGAAA
ACACAAAAACAATAAAATATCGAAATCTCTTTAAAATTCTTAAAGCTATA
AGAATCACAAAACAAAACACTTCCCAACTTTTAGAAAATATGTTTCTTTT
TCACCAAAAAGATTAGTGGTATGGATTTGTTCGTACTTAAGTCTGCCATA
TCACACAGGGCCACTTATCAGCGCCATCTACACGTTTTTTTTATAAGAAC
AAACTATATAAGAACATAAGGCTTCGATGGCCAAAATATTAAGAACAAGT
TAAAACTTTTTGAGGCTTTGAGGACCCTAAAACACCCGATCTCTGGACCC
GAAAATGGATAGAAATTCTCAAAAATGGCTAAAATAAGAACACGTTAAGA
ATATTTTTAGGCTTAAAATCCAAAAAGCTAAGAACATTCCAAGGCTTCAA
AATTTTTGAACGTGTTATCTTGAACAAGCAATTAGTGGCCTGTGGTCTAT
TTAGTAACCTGCTGCAAATATTTTCAATATATTTTACAGTAGGGATGTTA
TGGTATTTGGGAGTGGGCTCCAGGCAGATGTTTCTCTCCTCTGCAATGAA
GGAACCCCCCGATGAAGGGTCTTTCTCAATCGTCAAAGACATCAAAGGAG
AAGGTCAGTGTTTTTTTTCATGATAGTAAATTCTTATTGGCGTAAAATAA
ATAAACGTATGAAATTTTGTAAATAATAGTAATTGAGCTTTTTCAGAAAA
AAATTGAACATGGGAGGGAGTGGAGGATATAACATTTTTTGGAAATTTAC
GCCCAGGATGGCAGGTCTAACCCCCCCGTACAAGCATTAGTTGACCCCCC
TAAACAGAGAAATTTTGTCCTCCAAACAAGGCAAATTTTGTAGATTTTTC
ACTACCCCCCATATCCTCCACCCCCCATGTACGAACATTTTCTGGAAAAG
CCCATTTACGAGAAGAGATGATCAAAGAAATGGCAGAGTAGAAGATTTAT
AATATTGAAAATAATATCCCAATGCAATCATTATAAAATAAACAATAAAC
TTAATGTTTGTTTTCGTCTCTCACAGAACCTTACATAACAATCAAGATGA
AATGTTATTACCATGACAACCAAACCTATGGCGTCGCATGGCAACAGTTG
CTAAACAACACGAAGTGTCATCAACAATTATTCGACAAGTGTTTTACTGA
ACGTTCGATCGTTGGGCGACATGAGACACATGTTTTAACGTTTCACAGGA
TACAGGACATCAGACGTTGTGTATGTACTGATGTCAGTGAATGGTACGTC
AACTCATGCCTTCGGTCAAAGGATGTTCATTGTTGTTTAGATCGTGGAGT
AAATTCAGTGAAATGTTATTCAGTGACGTAAACGATTATGGATACAACAA
GATCTAGGAGTTAAGAGTCTGAAATCGTATCTATATATTCGATACAAGAT
GGACATCAACGTGTCATTCAACCATGGATGAGATTGTTGATCGAGAATAT
CCAGGACACGTACAAATCGTTAGAAAATCTCAAGAAAAATCATTGTGGAG
CGAAAAACATTGAAGAATCATTTACATCGACTACAAACGCCAGTACCAAT
TACATTCACCAAATATACAGTAAAGCAAACGGTTCATCTAACAAGTCATA
ATTTTTAAGAGGCAGATTTCTCCAAACAACCCAGATACCAAGCGACAGTT
TTCAATTAGACGAATAGACGGATTTTCGAGACGTCATTTATCCTTCTTTG
TCTCCTTATCGTCGCTATTTTGTTGCCGTTGTTGTTGTTGACGGATTTGT
CGTTGTTTGACGTCAATCAAAGTTCGTGCAGCGCTACTCAGCCACATAAC
CTGAAAACACGACAGAAGGGAAGACCGTTATACTCATCAGAATGAAAGAG
AGAGAGAGAAGAAGGGAGGTAGCATTAGGGGACTTAAATACCTCTATTTC
GGAAGATTGGACTTGGTATTATAAATTTTGTCGAGAACAATATGTCCCCA
ATGACTTGAGGTACTTGAGCTAATCCATTCATATCAAACAAATAAATATT
TCTAACAAGATATGGTTTGATACCATTGTGAATTTTTCTCATGTGCGAGA
TTTTTGCTATGGATCGGTATTCATTTCAAATTTCTCGACAGAAATAAAAA
CTGAATTGATAGATCAGACAATACGAGAGTTTGTACAAGACGAAGAGTTC
TTCGAGACCCGACCAGATAAAGGAAGCAAAATTCCCAAGGCTGTAACAAA
ATAAGCTGGCTGAATGAAAATAATAGAAAGGAAGAAAAAAACACATTTTC
ACTTCTAAAGATGACAAATTATTTCC

Coding sequence (CDS) from alignment at scaffold_298:248646..251671-

>TCONS_00057775 ID=TCONS_00057775|Name=TCONS_00057775|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_298:248646..251671- (Clytia hemisphaerica)
AACCTTACATAACAATCAAGATGAAATGTTATTACCATGACAACCAAACC
TATGGCGTCGCATGGCAACAGTTGCTAAACAACACGAAGTGTCATCAACA
ATTATTCGACAAGTGTTTTACTGAACGTTCGATCGTTGGGCGACATGAGA
CACATGTTTTAACGTTTCACAGGATACAGGACATCAGACGTTGTGTATGT
ACTGATGTCAGTGAATGGTACGTCAACTCATGCCTTCGGTCAAAGGATGT
TCATTGTTGTTTAGATCGTGGAGTAAATTCAGTGAAATGTTATTCAGTGA
CGTAATAGGGATGTTATGGTATTTGGGAGTGGGCTCCAGGCAGATGTTTC
TCTCCTCTGCAATGAAGGAACCCCCCGATGAAGGGTCTTTCTCAATCGTC
AAAGACATCAAAGGAGAAGATGAAAGAAATTTTTGACATCAAGGGATGGA
GGATTGTTATTCTACTCGTTATCGAACCTTACATAACAATCAAGATGAAA
TGTTATTACCATGACAACCAAACCTATGGCGTCGCATGGCAACAGTTGCT
AAACAACACGAAGTGTCATCAACAATTATTCGACAAGTGTTTTACTGAAC
GTTCGATCGTTGGGCGACATGAGACACATGTTTTAACGTTTCACAGGATA
CAGGACATCAGACGTTGTGTATGTACTGATGTCAGTGAATGGTACGTCAA
CTCATGCCTTCGGTCAAAGGATGTTCATTGTTGTTTAGATCGTGGAGTAA
ATTCAGTGAAATGTTATTCAGTGACGTAATAGGGATGTTATGGTATTTGG
GAGTGGGCTCCAGGCAGATGTTTCTCTCCTCTGCAATGAAGGAACCCCCC
GATGAAGGGTCTTTCTCAATCGTCAAAGACATCAAAGGAGAAGATGAAAG
AAATTTTTGACATCAAGGGATGGAGGATTGTTATTCTACTCGTTATCGAA
CCTTACATAACAATCAAGATGAAATGTTATTACCATGACAACCAAACCTA
TGGCGTCGCATGGCAACAGTTGCTAAACAACACGAAGTGTCATCAACAAT
TATTCGACAAGTGTTTTACTGAACGTTCGATCGTTGGGCGACATGAGACA
CATGTTTTAACGTTTCACAGGATACAGGACATCAGACGTTGTGTATGTAC
TGATGTCAGTGAATGGTACGTCAACTCATGCCTTCGGTCAAAGGATGTTC
ATTGTTGTTTAGATCGTGGAGTAAATTCAGTGAAATGTTATTCAGTGACG
TAATAGGGATGTTATGGTATTTGGGAGTGGGCTCCAGGCAGATGTTTCTC
TCCTCTGCAATGAAGGAACCCCCCGATGAAGGGTCTTTCTCAATCGTCAA
AGACATCAAAGGAGAAGATGAAAGAAATTTTTGACATCAAGGGATGGAGG
ATTGTTATTCTACTCGTTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036416XLOC_036416Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057775-proteinTCONS_00057775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057775-exon-scaffold_298-1575043694:251547..251671TCONS_00057775-exon-scaffold_298-1575043694:251547..251671Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1575043694:250319..250432TCONS_00057775-exon-scaffold_298-1575043694:250319..250432Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1575043694:248646..249895TCONS_00057775-exon-scaffold_298-1575043694:248646..249895Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1510915933:251547..251671TCONS_00057775-exon-scaffold_298-1510915933:251547..251671Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1510915933:250319..250432TCONS_00057775-exon-scaffold_298-1510915933:250319..250432Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1510915933:248646..249895TCONS_00057775-exon-scaffold_298-1510915933:248646..249895Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1491911889:251547..251671TCONS_00057775-exon-scaffold_298-1491911889:251547..251671Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1491911889:250319..250432TCONS_00057775-exon-scaffold_298-1491911889:250319..250432Clytia hemisphaericaexon
TCONS_00057775-exon-scaffold_298-1491911889:248646..249895TCONS_00057775-exon-scaffold_298-1491911889:248646..249895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:248646..251671 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102208	0	0.368509	0.0962438	2.84289	2.06875	1.84702	1.56216	1.8212	0.795895	2.63187	1.77463	2.43701	1.42072	1.83658	5.05854	2.76542	2.62308	0.235204	0.299672	1.10582	0.942964	0.512627	1.4088	2.57326	1.67152	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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