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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057782 ID=TCONS_00057782|Name=TCONS_00057782|organism=Clytia hemisphaerica|type=transcript|length=2001bp aaatcttgcaaattttacaatctatagaaagaactgaataaaaaacgtgc aaatactttaaaaaatcaaaaatgtcattttttctctttgttttgcttcg tttgtttgatttgaaatgccagaaaaggggattcctttgctcaaaatggc atttcaaatgccaacaaaatgccaacacgctggcatcattaggcatTTGA CAAACCGAACAATTGCGCGGAACAATAGAATTCAAAAaaatactgcaagc aattacaaatgccagacTGGTCTAAACGCATGATTATTGTGCGGATTAAA CACCTTTCCAAATTTCgcagatgacacccaaatccccGCGAGAATTTATC TCATTAAAGTAATTATCGCTAAATAAATAATTTGATTATATTAGGCGACG GAATAAATatagatttttataaaagatggcaaataattcaaaaatcattt gTAACTTGGTTATGCGTGAAAATTATCAAcattaaattataaaaatgaaa ttatcattgAAACAAATAACCTGCGTTCTGTTCACACTGCTCATATCCAA CACAGATGGACGCCGCAGGAAATTTAAACGTGGCTACCTTAGTAACCGAC CAAATATTATATTCATATTGGCGGATGATCTTGACGTCACGTTAGGTTCG CCTGACGTCATGCGAAAAACGAACGCTCTTTTGCGCCAGCAgggcgttac tttcaaaaaTGCCTTTTCGACGTCGCCCCTGTGTTGTCCGTCACGCTCTT CGATCTTGACCGGTAGATACACCCACAACCACCACGTGCATAGCAATAAT AAGAATTGTTCTGGCCCTGGGTGGAtcaataaagaagaaaaagagaCCAT AGGTGTATTTATGCAAAAAGCTGGTTACCAGACAGcattttttggaaAGT ATTTGAACAAATATGATGGTAGGCGAGTGCCACCCGGTTGGGACCACTGG AACGCGTTGCGTGGTAACAGTCGTTACTATAACTACACACTAAATATCAA CGGAAAATTGAAAAGACATAACCATGATTATAAGAATTACTTCACGAATG TCATCACAGATCAAAGCACGCATGGACTATTTCACAAAACATTCCCTCAA GGCCAACGATAAACCTTTATTAATGGTTGTCGCACATTCGGCCCCTCATG GTCCGGAAGATGGGGCCCGGCCTTATTATGAGAAGTTTCCAGACGTCAAA GCGCCAAGGGATCCTAACTATAATTTCACTTCACTCGACAAACATTGGCT CATTCGAAACACACCCCCTTTAAATAATGTGACGTCACAATTCACGGACA CGTTACATCGTAAACGGTTAATCACCCTCCTTTCTTTGGACGATGCCATT GAAAATGTGATCCTCACGTTGGAAAAAACAGGCCAGCTACACAACACTTA TGTGTTTTTCTCATCTGGCCACGGATATCACCTTGGTCAGTTTAACCTAG TGAAAGGGAAATCACAGCCGTACGAATCCGATATTCGAATTCCATTGTAC ATGCGAGGACCGAATATCCCTAAAGACGAAGTgAGAGAAGAAATTGCATT AAATATCGACTTCGCACCAACCTTTTTGGACATAGCAGGTGCCAAACCGA ACAGAATTATGGACGGGACAAGTTTGTTGGACGTGGCTGTCAGACCTACT GATAACAACAATATCAATAGgaGATTAGTAAGGCCAGTGTCATTTAAAGA GCCCGACTCTCGAGAAgaagaaatcttgaaattatgTTTGAAATATGGAT ATCCTAAACCCCCATGCACACCAGAGAAGAAAATTGTTTGCTACTCAAGC GGCGATCAGATCTATGTTCAGAAGTGCTCTGTGGAAGTGAGTGAGACCGA GCGGTGTTCCTGCACAAGAGATGGTAAAGAAACAGAAAAATCACTATGTG AGGCAGAGAATAATCGAGTTAAACCATTGTTGGAGATATTAAAGCAAAAA ATTGAGAACTTGAGGCGAAGAATCAAAAGACATAGACATAAATATTTAAA G Run BLAST on NCBI transcript from alignment at scaffold_298:282476..288210- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057782 ID=TCONS_00057782|Name=TCONS_00057782|organism=Clytia hemisphaerica|type=transcript|length=5735bp|location=Sequence derived from alignment at scaffold_298:282476..288210- (Clytia hemisphaerica) AAATCTTGCAAATTTTACAATCTATAGAAAGAACTGAATAAAAAACGTGC
AAATACTTTAAAAAATCAAAAATGTCATTTTTTCTCTTTGTTTTGCTTCG
TTTGTTTGATTTGAAATGCCAGAAAAGGGGATTCCTTTGCTCAAAATGGC
ATTTCAAATGCCAACAAAATGCCAACACGCTGGCATCATTAGGCATTTGA
CAAACCGAACAATTGCGCGGAACAATAGAATTCAAAAAAATACTGCAAGC
AATTACAAATGCCAGACTGGTCTAAACGCATGATTATTGTGCGGATTAAA
CACCTTTCCAAATTTCGCAGATGACACCCAAATCCCCGCGAGAATTTATC
TCATTAAAGTAATTATCGCTAAATAAATAATTTGATTATATTAGGCGACG
GAATAAATATAGATTTTTATAAAAGATGGCAAATAATTCAAAAATCATTT
GTAACTTGGTTATGCGTGAAAATTATCAACATTAAATTATAAAAATGAAA
TTATCATTGAAACAAATAACCTGCGTTCTGTTCACACTGCTCATATCCAA
CACAGATGGACGCCGCAGGAAATTTAAACGTGGCTACCTTAGTAACCGAC
CAAATATTATATTCATATTGGCGGATGATCTTGACGTCACGTTAGGTTCG
CCTGACGTCATGCGAAAAACGAACGCTCTTTTGCGCCAGCAGGGCGTTAC
TTTCAAAAATGCCTTTTCGACGTCGCCCCTGTGTTGTCCGTCACGCTCTT
CGATCTTGACCGGTAGATACACCCACAACCACCACGTGCATAGCAATAAT
AAGAATTGTTCTGGCCCTGGGTGGATCAATAAAGAAGAAAAAGAGACCAT
AGGTGTATTTATGCAAAAAGCTGGTTACCAGACAGGTAAGTGTGATAGCA
GATTTCTTTCCGATATCGGAAATCGGGGAAACATTTTTTTGGATATCGGA
AAATCGGGGAACTTTTTTCCGACATCGAAAAATTGGGAAACTTTTTTCCG
ATATAAAATAATTGGGGAAAATTTCTGCTTAAATTAAAAAATGTTATATT
AATTTCAGCATTTTTTGGAAAGTATTTGAACAAATATGATGGTAGGCGAG
TGCCACCCGGTTGGGACCACTGGAACGCGTTGCGTGGTAACAGTCGTTAC
TATAACTACACACTAAATATCAACGGAAAATTGAAAAGACATAACCATGA
TTATAAGAATTACTTCACGAATGTCATCACAGATCAAAGCACGCATGGAC
TATTTCACAAAACATTCCCTCAAGGCCAACGATAAACCTTTATTAATGGT
TGTCGCACATTCGGCCCCTCATGGTCCGGAAGATGGGGCCCGGCCTTATT
ATGAGAAGTTTCCAGACGTCAAAGCGCCAAGGTATATCTTTTTTTGTTGA
TTTTCGAAATCCAAATACAAAAATCGAAAGAAATTTTGAGTTAATGACAA
AGTCGAGTGTAGATAAAACGAATTTTTAAGGCATCTAGTCATTTCGGATA
AAAAATTTTCTTTTGCTAAATAATCTCACATGAAATCATTGCAAACCAAA
TGACAGTGATCTATTGGCCTAAATTAACCAGGTTTTGAAGCATACTTTCT
ATTCTTAACCTGTATTTCAGGGATCCTAACTATAATTTCACTTCACTCGA
CAAACATTGGCTCATTCGAAACACACCCCCTTTAAATAATGTGACGTCAC
AATTCACGGACACGTTACATCGTAAACGGTTAATCACCCTCCTTTCTTTG
GACGATGCCATTGAAAATGTGATCCTCACGTTGGAAAAAACAGGCCAGCT
ACACAACACTTATGTGTTTTTCTCATCTGGCCACGGATATCACCTTGGTC
AGTTTAACCTAGTGAAAGGGAAATCACAGCCGTACGAATCCGATATTCGA
ATTCCATTGTACATGCGAGGACCGAATATCCCTAAAGACGAAGTGTACGT
TTTTTCGTTGTTTTCCATCTTTCATAGAATTCGTACATTTGTAACATGCT
ATTTTCTATTCAATTTAANGAAGTGTACGTTTTTTTGTTGTTTTCTATCT
TTCATAGAATTCGTACATTTGTAACATGCTATTTTCTATTCAATTTAAAA
GTGAAAATGCACAAATTTTGCGCAGATTTCCCTTCGCGAAAGACGTTGGA
AAAAACTGATTTTTTCTGTCATCATTCAATTGACTTGGGAACTGAAGAAT
ACTTTTCCATTGTTGTTGCCTTTGTAAAACTTATAATCTCAATTCTCAAA
AGAGTGCTCAACCATAAAAGTCAATTACTATTATTATCTATTAGTCACCC
TCTTTCATTTTCCTAAGAGTTTTGGCCAAATTTTGGATTTTAACTATTTC
ACGGGGACCAATTTTCGAAAAAACGGCCAAAATTTTATTGCGAAAATCGA
AATTTAATCCAAAGTCAAAGTGATGTAAGCTAGAAGATTTCACCATCTTT
GAATTTTAAAAGTACTTAAATGCCTCTGAAAACAATGACCTCCAACTTCT
ATTGAGAGGATCCCATCGAAACTCCCGGTAATTGATATTCAACTCCACTT
CGCTTCGTTGAATATTGCTTACCTCGAGTTAATAAATCTCAATACAATGA
AATACCATGCAATATCTGCTTATTATCTTGTTTTTCTTCAAAATAGGAGA
GAAGAAATTGCATTAAATATCGACTTCGCACCAACCTTTTTGGACATAGC
AGGTGCCAAACCGAACAGAATTATGGACGGGACAAGTTTGTTGGACGTGG
CTGTCAGACCTACTGATAACAACAATATCAATAGGTTGGGTTTGGTAATC
TTTTCATAGCATTTTGAAAAGCCAAAACAAGGGGAGAAAATATCCCATTT
TTTTATTTGTATCTTCTCCACGCTAGTGCCCAGTGCCTTTTTAGATGAAA
ACAATTTAGAGCTTAGTCCCTTAAAATAAGACTTAAAACCGACGTATTCC
TCTTTTTCAATCTTGTTTTCCCGCTTTATTCACGTGAAAAGTTTTATATG
AAGGTGAAGCACAAAGAACGCAAAATTAGGCAAACCCGAAGGAGAAAAAA
ATCCGTTTTATTGTTTTAAAGTACCTTATCGGGGAAAACTTCGTCGGGGA
AAAGTGACGAAATTTTGGCCAAGTGACGAATATTTTTCCTTGACGAAAAT
TTTCCCGATAAAGTTTTCCCCGATAAGGTAGTGAAAAGAGCACAGTACTG
GTCAAACTTTCCGCTATGTATCTTCTTGGGAGGTCCCAGTTTGTGCAGTG
AATACACCGTACTATCAACCCTTTACGGCGCGGTCGTTTTCTGAGGAGTC
TGGTAATGAATTTACAAGGAACTAAAGGCCGGTCTCCACTTTCGCGCGAA
ATGAACGACATTTTTTTTCTTAACCTTTTTTGCCTGAAGAAAAGATTATG
TCATAAAAAAGTTTCGCGCGAACAAAAAAAAGTTGAAGTAAGTTCTACTT
TTTTCATCCGTTACATCAATTTCGTACCCTGAGTATCAGAGGTTAAGTTT
TTAAAGAATATATTAACCTCTGAAGACCAATAATAGAAATTTTATCGCGC
ATGTGTCAATCTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAATAT
TACCATATTAATTCAGTTTACTATTTACGAATTCCCCAGAAACCTCCAAG
TGTAATTGAAATGAATTTATATCGAAAGAAATCTTTTACATGATCCCCAC
ATGTATAACAGTAATTACTAAACTTTTAATTATGGAAATGTCACTTTAAT
TGAATCAAAATAATAGACAGACTTTATGTTATGATTCTCTATCATATTCT
CTTTTTACAAAGCATTGATGACTTTTTAAGTTTGTGTTTTCAACGACGGG
AATAAAAATGTCAACTTTGAACTTCATCTAAGATCTTGGATGGTCGTCAT
CGTTACTTTTGTCTTCGTTGATTGCGCGCTGAATAGAATCTCGATTCGTC
GGCACAGCGTCAATATATGATTTTGACCTGTGCTATTCACGGCAATGCAC
CATTGCAATGTATTCCACGGACACAACAGCTGATTGGTTGCAAGTGACGC
ATTGACTGATTTTAAGTCACATACAACCAATCAGCTAATGGGTCCTTCAA
TGTCAGAAGACATTGCAATGATGCATATTATGAATTCATAGCGACCGTAG
TGCAGTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTGTGGGTTCAACCC
CCAGCCGGGTCATACCAAAGATTCCCAAAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTAGAT
AGCTATCGAAAGAGGAGCCTTCGGGTCGCCTCCGACTGCGGTCGCAGACT
TACTTATGAATTCAAAACAAATTTGAGAAAAAAATAACTTTTTTCATCTC
TTTCAGCAAAGTAAAGAAACCCATCTGGAAAGATACCTTCTTGGTGGAAA
GAGGGTTGGATTTGCTTCTTATTGGTCTGGGGGTCTAAATGAATCTTGTT
CTTTCACTTATTTTGATTTGAAATTTTATGGACACTTTCATAAGCACTCT
ATGGGCGTAAAAAATAATTTTGTCTAACGATAATGCTCTGAAAGTTTTGA
TTTATTTTGCGTTTCTTCATTTTTAGGAGATTAGTAAGGCCAGTGTCATT
TAAAGAGCCCGACTCTCGAGAAGAAGAAATCTTGAAATTATGTTTGAAAT
ATGGATATCCTAAACCCCCATGCACACCAGAGAAGAAAATTGTTTGCTAC
TCAAGCGGCGATCAGATCTATGTTCAGAAGTGCTCTGTGGAAGTGAGTGA
GACCGAGCGGTGTTCCTGCACAAGAGATGGTAAAGAAACAGGTTATATTA
TACCTTGTACCACCTTGTGTATAACGTAAAGGCCAGGATCTACTTGCGCG
CGCTGCGATCGCATTTTTTCGAGCAAAGCTATCGCGGTATTGGTCAAAAT
AAAAATGAAGCAACTCCATTGGCGCGATCTGACGTAACGGTTGAAACAAG
TAGAAAATGGGTTCAACTTTTTTTTCGAGCGCGCGCTACATTTTTATGAC
GTAATCTTTTTCCCAAGCAAAAAGAATTGAAGCCAAAAAGTGCAATCGCA
GTGCGCGCAAGTGGAGACCGGCCTTGATGATGTGAATCTTTTCATCGATG
ATATCTTTCAACATTTGGCGGCAAAAATCGCCAAAGTTTTCATTTACCCT
GTACTTTATTTTGGCAATCCACGTTTTTTTTCTTAAGCATAGGGTTCTTT
TGATTTGTTGCTAATAAACGCTGGGTTAATGTTTAAATTTCTTTTGTTCT
ATAGCAGTTGATCTAGCCCAAATTACAGCACCTGACTATGCTTATAAGCT
TTATGCTTTTATAAATAAAAAAACTTTTTGCTCTAGCGCCTTGCAATGTA
AAATCAAGGCAAACACTGTGCAGGGATATCTTAATGACTAACTTCATCTT
ATTGTCAAATTTCATGTAGAAAAATCACTATGTGAGGCAGAGAATAATCG
AGTTAAACCATTGTTGGAGATATTAAAGCAAAAAATTGAGAACTTGAGGC
GAAGAATCAAAAGACATAGACATAAATATTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057782-exon-scaffold_298-1575043694:287326..288210 | TCONS_00057782-exon-scaffold_298-1575043694:287326..288210 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1575043694:286830..287152 | TCONS_00057782-exon-scaffold_298-1575043694:286830..287152 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1575043694:286267..286590 | TCONS_00057782-exon-scaffold_298-1575043694:286267..286590 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1575043694:285427..285564 | TCONS_00057782-exon-scaffold_298-1575043694:285427..285564 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1575043694:283220..283434 | TCONS_00057782-exon-scaffold_298-1575043694:283220..283434 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1575043694:282476..282591 | TCONS_00057782-exon-scaffold_298-1575043694:282476..282591 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1510915933:287326..288210 | TCONS_00057782-exon-scaffold_298-1510915933:287326..288210 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1510915933:286830..287152 | TCONS_00057782-exon-scaffold_298-1510915933:286830..287152 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1510915933:286267..286590 | TCONS_00057782-exon-scaffold_298-1510915933:286267..286590 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1510915933:285427..285564 | TCONS_00057782-exon-scaffold_298-1510915933:285427..285564 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1510915933:283220..283434 | TCONS_00057782-exon-scaffold_298-1510915933:283220..283434 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1510915933:282476..282591 | TCONS_00057782-exon-scaffold_298-1510915933:282476..282591 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1491911889:287326..288210 | TCONS_00057782-exon-scaffold_298-1491911889:287326..288210 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1491911889:286830..287152 | TCONS_00057782-exon-scaffold_298-1491911889:286830..287152 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1491911889:286267..286590 | TCONS_00057782-exon-scaffold_298-1491911889:286267..286590 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1491911889:285427..285564 | TCONS_00057782-exon-scaffold_298-1491911889:285427..285564 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1491911889:283220..283434 | TCONS_00057782-exon-scaffold_298-1491911889:283220..283434 | Clytia hemisphaerica | exon |
TCONS_00057782-exon-scaffold_298-1491911889:282476..282591 | TCONS_00057782-exon-scaffold_298-1491911889:282476..282591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_298 | supercontig | scaffold_298:282476..288210 - |
Blast
BLAST of TCONS_00057782 vs. Swiss-Prot (Human)
Match: SULF2 (Extracellular sulfatase Sulf-2 OS=Homo sapiens GN=SULF2 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 2.443e-100 Identity = 96/196 (48.98%), Postives = 129/196 (65.82%), Query Frame = 3
Query: 501 LSLKQITCVLFTLLISNTD-----GRRRKFKRGYLSNRPNIIFILADDLDVTLGSPDVMRKTNALLRQQGVTFKNAFSTSPLCCPSRSSILTGRYTHNHHVHSNNKNCSGPGWINKEEKETIGVFMQKAGYQTAFFGKYLNKYDGRRVPPGWDHWNALRGNSRYYNYTLNINGKLKRHNHDY-KNYFTNVITDQST 1070
L L ++ +F+LL ++ + +F+R + RPNII +L DD DV LGS VM KT ++ Q G F NAF T+P+CCPSRSSILTG+Y HNH+ ++NN+NCS P W + E T V++ GY+TAFFGKYLN+Y+G VPPGW W L NSR+YNYTL NG ++H DY K+Y T++IT+ S
Sbjct: 6 LVLCLLSATVFSLLGGSSAFLSHHRLKGRFQRDRRNIRPNIILVLTDDQDVELGSMQVMNKTRRIMEQGGAHFINAFVTTPMCCPSRSSILTGKYVHNHNTYTNNENCSSPSWQAQHESRTFAVYLNSTGYRTAFFGKYLNEYNGSYVPPGWKEWVGLLKNSRFYNYTLCRNGVKEKHGSDYSKDYLTDLITNDSV 201 HSP 2 Score: 191.43 bits (485), Expect = 2.443e-100 Identity = 91/192 (47.40%), Postives = 130/192 (67.71%), Query Frame = 1
Query: 1111 KPLLMVVAHSAPHGPEDGARPYYEKFPDVKAPRDPNYNFT-SLDKHWLIRNTPPLNNVTSQFTDTLHRKRLITLLSLDDAIENVILTLEKTGQLHNTYVFFSSGHGYHLGQFNLVKGKSQPYESDIRIPLYMRGPNIPKDEVREEIALNIDFAPTFLDIAGAKPNRIMDGTSLLDV--AVRPTDNNNINRRL 1677
+P+LMV++H+APHGPED A Y FP+ P+YN+ + DKHW++R T P+ + +FT+ L RKRL TL+S+DD++E + L +TG+L NTY+ +++ HGYH+GQF LVKGKS PYE DIR+P Y+RGPN+ + I LNID APT LDIAG MDG S+L + RP + ++ +++
Sbjct: 214 RPVLMVISHAAPHGPEDSAPQYSRLFPNASQHITPSYNYAPNPDKHWIMRYTGPMKPIHMEFTNMLQRKRLQTLMSVDDSMETIYNMLVETGELDNTYIVYTADHGYHIGQFGLVKGKSMPYEFDIRVPFYVRGPNVEAGCLNPHIVLNIDLAPTILDIAGLDIPADMDGKSILKLLDTERPVNRFHLKKKM 405
The following BLAST results are available for this feature:
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