TCONS_00057786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057786
Unique NameTCONS_00057786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057786 ID=TCONS_00057786|Name=TCONS_00057786|organism=Clytia hemisphaerica|type=transcript|length=1751bp
aaattttggacaagtgacgaatattttccccgacgaaaattttccccggc
cttaatgcgtttaccaactaccagcaagtgacgaatatttttccccgacg
taaatttttcccgacgaaaattttccccgacgaagttttccccgataagg
tatttattGGTTTTCATTCTTCTAGAGAAGACAGAGAAAACGTTAAGCGA
GGCAGAAGAGAATCGAGTCAAATCATTATTGAAACAACTTGAACAACAGT
TCGAAAGATTAAAACGAAGAATCAAAAGACATGGTCTCCGATATTTCAAG
AAcattctcaaatcaaaacaagaatTGCTTCAACCGGTGAAAGGTCAGCC
ATTAAATTTGACGACGtcagcaaaacagaaaatcaACCTCATCAACCAAA
CACTTGCAACAATTTCACAAAAACGAAAATTAGAAATGCTGCTAGACAAA
CAGATCGAGAGAAAACTTCAAGAGTTGGAATACTGGCAAAAACAACGCGA
AAAGTTGACGAAAAATCGtaatattaagaaaaaattggaGAAAAGATTGA
CGCAAAAGATTTACAAAGAAGAACAGTTTAATTTGTTGATCAAAGAAAAT
GATGAAAGTACGGTTAGTAACAACTCCACTACAACCTCATCTTGTATTTG
TGAAAAGAAACAGAAGATCAAGAAAGAGAGAAAGAAAAGTTCCAAAAAGC
GAAGAGGATACAAAATGAATTGTTTCTCAATGAGTAAGAAACATTGGAAG
ACTCCCCCTTATTGGACTGGACCAGAATTCGTAGCATGCACAAACACAGC
GAACAGTACATACTGGTGTTtaagaaccatcaattccacgcATAATTTCC
TCTACTGTGAATATTGGACAGGCTTCGTGGAATACTTCGATATGCAAACA
GACCCTTATCAGttgTACAATAAAGCTGACAACATGACGGCTGACTTTCA
AAAGGAATTGAGTTCACAACTGCAATATATGAGAAAATGTCGTGGCGCCA
AAGAATGTTTCTTGAAAGCTTCTCAATCTTTCTCTGTTAGAAGGGACATG
CTACGAAAATGGCGTCGCTACGAGCGGAAAAAGAGACATGGTATATTCGT
TCGGGGACCTTTTATTCGCGACTCGACGGCATCGCGAGAAGGAGCCAGAA
AGATTAAAACCTCAAAATCTTAGCGGTGAAAGAAGAATTTTTGGTGAGAA
GCAGGTAGAAAAGTAGTGATGAAGTGAAgacccagctggtacacaacgtt
gttttaacgttcaaataacgttatttggacgttatgaatgtcaaatggac
gttgttttgacgttgtgtgccggctggggaGTATCCAACCATGGAAGTTT
CTCTGATGGCTTGACCAATAACAGCCATGATTGTCAGTAATTCGTNGTGT
GCCGGCTGGACGAGTATCCAACCATGGAAGTTTCTCTGGTGGCTTGACCA
ATAACAGCCATGATTGTCAGCAATTTGCAAATATCGttggaaaaaaatac
aaaaaacttacttcaaatttgtaatttttatttaaatatgaaAAGATTTG
AGTGCGCATGTCTAATGTGTATTAATGAAGAAAATATCCCTGAAAGGGAC
ACGATAGATTCAGTAGACTAACtaattattgtttttttattttaagtgaG
GAAAAACATGACCctttgtaaataattttttttttgaaaatcattttttc
ctttcagaaataaaattttcttttaaactaTGAATGATGACAAAACCGAG
A
Run BLAST on NCBI

transcript from alignment at scaffold_298:304699..309558-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057786 ID=TCONS_00057786|Name=TCONS_00057786|organism=Clytia hemisphaerica|type=transcript|length=4860bp|location=Sequence derived from alignment at scaffold_298:304699..309558- (Clytia hemisphaerica)
AAATTTTGGACAAGTGACGAATATTTTCCCCGACGAAAATTTTCCCCGGC
CTTAATGCGTTTACCAACTACCAGCAAGTGACGAATATTTTTCCCCGACG
TAAATTTTTCCCGACGAAAATTTTCCCCGACGAAGTTTTCCCCGATAAGG
TATTTATTGGTTTTCATTCTTCTAGAGAAGACAGAGAAAACGTTAAGCGA
GGCAGAAGAGAATCGAGTCAAATCATTATTGAAACAACTTGAACAACAGT
TCGAAAGATTAAAACGAAGAATCAAAAGACATGGTCTCCGATATTTCAAG
AACATTCTCAAATCAAAACAAGAATTGCTTCAACCGGGTAAGTACACCTT
AATTTTTTTATAAGAACATTAAAAATTTTTGAAGCCTTCGGATGTTCTTA
ACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAACATGCTAACATGCTCT
TGATTTTCGAATATTTTGTGAGTATCTTTGTCCAATAAAATATGGGGTTT
GAAATGTCTAGCTTTATGCGTATTTAAAGGTTTGTTAAACTGCCACTGTG
TGGTTTCGGGAAATTTTAAAAATTAGGAAGATGAAATTTAAATGGGGGTT
TGAGACCCCCTTTGTATATTATTAGCGAGATTATGTATCTAGAGATCTCT
ACGGCTACAGTTAAAGTGGCGAGGGAAATGGTGAGTAAGGCAAGTAATGG
CGGGTGAAAGCAAGTTCGATATTTGACGTACGGCATGTCGACTTTGCTTA
TACGGTGTTTTGGTGTTTTTCCCGTACAGAACAAAGTAGACAACGACATG
TCGCCTTTTGTGACGACCCGTACGTGCAGCCCCGCAATCGTAGCCGTAGA
ATATCTCTGATACATAATCTCGCTATTATTTAACCGTATATAAAATTAAC
ATTTTCATTTTTTTTCACTAGCAGTGAAAGGTCAGCCATTAAATTTGACG
ACGTCAGCAAAACAGAAAATCAACCTCATCAACCAAACACTTGCAACAAT
TTCACAAAAACGAAAATTAGAAATGCTGCTAGACAAACAGATCGAGAGAA
AACTTCAAGAGTTGGAATACTGGCAAAAACAACGCGAAAAGTTGACGAAA
AATCGTAATATTAAGAAAAAATTGGAGAAAAGATTGACGCAAAAGATTTA
CAAAGAAGAACAGTTTAATTTGTTGATCAAAGAAAATGATGGTAAGAATA
TTTGTTCCTCCTTTTTGTCTCATTCTTGACAGTACACGTTTTTTTTATAA
GAACATCCAAAAATTTTGAAGCTTTTTAGTTTTATAAGCCTAAAAATGTT
CTTAACATGTTCTTATTTTCCCCATTTTTTGAACATTTTTGTCCAGTTTC
CTAAGAAATTGGGTATTTTAGAGTCTACAGTACAAAGCCTTAAAATGTTC
TTAACTTGTTCTCAACGTTTTGGTCATGAAAGTCTTATGTTCTTATATAG
TTTGTTCTTATAAAAAAAACGTGTGAAATAAGAATTAACAACAGTGTACA
AAGTTCTTCCGTCCCAGACAGATTTCCATGCCAGAGAAGCTTCTCCGTTT
CCAAATCCGGCAAGATTCTATAAAATTTAAAGATTCTTTGCCCAATTTGT
CTATTTTCCTCTGAGACAAAAAAATGCTTTTACCACTGTTAAAGGTTTCA
TTTTCCATAAGTGTTCCCGTTTTATATCAGACTCATATTTCATATCAGGA
CAGTGTCTACCTATTGTCATATTGTGCTGATATAAGCAAAGAAGTGTTTC
TTTTCCTCTTTCTGACAAATTTTGCTTGCACATCCGGGTCGATCCAATGT
GAAAAAGCTAGTAAATTAAAATTGTTGAGTAAGGGGCCATCCATATAGTA
CGTACGCAGTGAAGGGGGAGAGGGGGTTTAGCAAAAGCGTACATCTATTG
TTTAAATGACATAATTTCTATTGTTCTCTGCGTACAAGGGGGGGGGGGTA
TCAAATTTTTGGAAAATCTTTGCGTACGTACTATATGGACGGCCCCTAAG
CAAACGATATCACTCTTATTTAAAAACAAAACCTTTAACAGTATTTTAAA
CACAACACTTTCTACCATTTCATTTTCACAGAAAGTACGGTTAGTAACAA
CTCCACTACAACCTCATCTTGTATTTGTGAAAAGAAACAGAAGATCAAGA
AAGAGAGAAAGAAAAGTTCCAAAAAGCGAAGAGGATACAAAATGAATTGT
TTCTCAATGAGTAAGAAACATTGGAAGACTCCCCCTTATTGGACTGGTAA
GTGTTGAATCTCAAACCAAACTCGAACCCAGTCCCTTAGTTCGCTTTTGA
TGATTTTGATAACGCTCACGAAAGCTGTATCACGTTCCATCAGTAAAATC
ACAAAGTGATACAAGTGGCCCTGGGTACGAAATTGGTCATTGGTCGAAGT
CGGCTACCAAAATGCACATCAAGGGCCAAAATGGACGATATAGTAAACTT
GAACCCAGTCCCAAAGTTCACTTCTTTATGATTCTGATAGTGCTCACGAA
GGAAACTGTGTCACATCCATCAGTAAAATAAATTGGTTGAGTGGAAGGTA
CTGACTAGGCTGTTTACAGACAAGCCTTTTTTACATTATTTCGTCGCTGA
TGTAATAGGGACCAGCGTAAGCGATCGGAATTAAATTTGGGCCGGGCTTA
ATATGAAAAAAGTGGAGCCTTGGGGGTGAAATAGCCTATACTAGACGCCA
CCCGCGTTTTTTTACGCAATTAACTAAGAAACGGGGATGAAAAATCCCGG
TATTTGACGAGGTGCTCACTAGGGTAATAAGAGCAAGCGTAAAAAGGGCT
GATAAAGTGCTTCATTGAACGATGTTTTTTTATACCAGTTGTCTTCGTTG
ACTTGACTCTTTTTCAATCTTGTATATTTCCAGGACCAGAATTCGTAGCA
TGCACAAACACAGCGAACAGTACATACTGGTGTTTAAGAACCATCAATTC
CACGCATAATTTCCTCTACTGTGAATATTGGACAGGCTTCGTGGAATACT
TCGATATGCAAACAGACCCTTATCAGGTATTTTTTCTCAATATTTAGACT
GGCACGCCAGTCGGGCTGGAACGGTATCACACGGAAAAAGTGAGCGTAGG
AGTTAGGTAAGCGTAGGAAGAAATTTTGGCGGCGGCGGCAAGGGCTGAAA
GCAGCAATCAGCAGCCTCTCACCAACCTTTGCTCGTTGTCCTAGCAGCTC
CTATTCTAGCAAACGCCTGCCGCCTTATGTTCCCGCCCTCTGACATGATT
AATTAACAGACTAGCTTTCTAGTCTACTCAATATTGCGCGTACTTCGTCC
TTCATTCTTTTGTGGCCATGGAGGATAACTGGTGATATACAGATGAATTT
TTTACTTTTCTAAAGAAAGTAGACAGGCTCAGTGGAAGCGAGGAGACTGG
GAAGACTTCAGCATCCCCACTTTTAAGCAAATGATATATTTTTCTCAAAT
TCCTACCAAATTTTATCTCATTTTTAGCCCTCAGCCTCCCCATTTTTACG
GTTGTTCCGTCAGGCCTGGGATTTAGGATTCGACCACAGTCCACGGATTT
TTTTTTCTGTCTTTTATCTTGATTGGCTGAGGCTCAGAATCGGACGGAAG
TATTGATTCTATTTTCATTTTTTTTTTAGTTGTACAATAAAGCTGACAAC
ATGACGGCTGACTTTCAAAAGGAATTGAGTTCACAACTGCAATATATGAG
AAAATGTCGTGGCGCCAAAGAATGTTTCTTGAAAGCTTCTCAATCTTTCT
CTGTTAGAAGGGTAAGAATTAATGTTTTTTTCTCAAACTGTCAAAAAGTT
TGGTTCAGTTTTCCTATAGAGGATTTTCATGTTTAGTATAGTTACGTAAT
TCCCGCCATTATGGAAGCAAATCGTTGCTTCCAAAATGGCGGAAATAATG
TAACTTTAAAAACCTCTATATTTTATTCTGGAAAATAGGGATGATTTTTG
AAGAATTAACAGAAAAATGTCTATTCAAATTACAGAAATTATTTTATACT
AATTTCTAGCTGAGGAAACCAATATTTTAGTTCGAATTATAGAAAGATTC
GAATAATAAAGCCCGAATTAGAGAGAGTTGACCGTAGTGCCAAACCTGCC
TCTGCGTCCTTAACAATGTGTATTTTTCATCATTTTTTCTGATTTTTCTT
CAGGACATGCTACGAAAATGGCGTCGCTACGAGCGGAAAAAGAGACATGG
TATATTCGTTCGGGGACCTTTTATTCGCGACTCGACGGCATCGCGAGAAG
GAGCCAGAAAGATTAAAACCTCAAAATCTTAGCGGTGAAAGAAGAATTTT
TGGTGAGAAGCAGGTAGAAAAGTAGTGATGAAGTGAAGACCCAGCTGGTA
CACAACGTTGTTTTAACGTTCAAATAACGTTATTTGGACGTTATGAATGT
CAAATGGACGTTGTTTTGACGTTGTGTGCCGGCTGGGGAGTATCCAACCA
TGGAAGTTTCTCTGATGGCTTGACCAATAACAGCCATGATTGTCAGTAAT
TCGTNGTGTGCCGGCTGGACGAGTATCCAACCATGGAAGTTTCTCTGGTG
GCTTGACCAATAACAGCCATGATTGTCAGCAATTTGCAAATATCGTTGGA
AAAAAATACAAAAAACTTACTTCAAATTTGTAATTTTTATTTAAATATGA
AAAGATTTGAGTGCGCATGTCTAATGTGTATTAATGAAGAAAATATCCCT
GAAAGGGACACGATAGATTCAGTAGACTAACTAATTATTGTTTTTTTATT
TTAAGTGAGGAAAAACATGACCCTTTGTAAATAATTTTTTTTTTGAAAAT
CATTTTTTCCTTTCAGAAATAAAATTTTCTTTTAAACTATGAATGATGAC
AAAACCGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036419XLOC_036419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057786-exon-scaffold_298-1575043694:309222..309558TCONS_00057786-exon-scaffold_298-1575043694:309222..309558Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1575043694:308368..308634TCONS_00057786-exon-scaffold_298-1575043694:308368..308634Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1575043694:307313..307477TCONS_00057786-exon-scaffold_298-1575043694:307313..307477Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1575043694:306533..306675TCONS_00057786-exon-scaffold_298-1575043694:306533..306675Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1575043694:305798..305929TCONS_00057786-exon-scaffold_298-1575043694:305798..305929Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1575043694:304699..305405TCONS_00057786-exon-scaffold_298-1575043694:304699..305405Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1510915933:309222..309558TCONS_00057786-exon-scaffold_298-1510915933:309222..309558Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1510915933:308368..308634TCONS_00057786-exon-scaffold_298-1510915933:308368..308634Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1510915933:307313..307477TCONS_00057786-exon-scaffold_298-1510915933:307313..307477Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1510915933:306533..306675TCONS_00057786-exon-scaffold_298-1510915933:306533..306675Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1510915933:305798..305929TCONS_00057786-exon-scaffold_298-1510915933:305798..305929Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1510915933:304699..305405TCONS_00057786-exon-scaffold_298-1510915933:304699..305405Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1491911889:309222..309558TCONS_00057786-exon-scaffold_298-1491911889:309222..309558Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1491911889:308368..308634TCONS_00057786-exon-scaffold_298-1491911889:308368..308634Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1491911889:307313..307477TCONS_00057786-exon-scaffold_298-1491911889:307313..307477Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1491911889:306533..306675TCONS_00057786-exon-scaffold_298-1491911889:306533..306675Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1491911889:305798..305929TCONS_00057786-exon-scaffold_298-1491911889:305798..305929Clytia hemisphaericaexon
TCONS_00057786-exon-scaffold_298-1491911889:304699..305405TCONS_00057786-exon-scaffold_298-1491911889:304699..305405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:304699..309558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.26975	3.16848	2.83643	5.02008	88.6199	58.7212	23.9246	26.85	9.26599	11.1696	6.75763	5.82747	3.47932	3.33582	7.27944	5.34077	11.1497	11.0855	7.21661	11.0922	7.97474	6.80459	22.3033	15.3064	10.7293	10.2688	45.5084	36.0642	25.0683	27.8647
Blast
[Close]
BLAST of TCONS_00057786 vs. Swiss-Prot (Human)
Match: SULF2 (Extracellular sulfatase Sulf-2 OS=Homo sapiens GN=SULF2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.560e-31
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:  715 MNCFSMSKKHWKTPPYWTGPEFVACTNTANSTYWCLRTINSTHNFLYCEYWTGFVEYFDMQTDPYQLYNKADNMTADFQKELSSQLQYMRKCRGAKEC 1008
            + CF+   +HW+T P+WT   F ACT+  N+TYWC+RTIN THNFL+CE+ TGF+EYFD+ TDPYQL N  + +  D   +L  QL  +R C+G K+C
Sbjct:  725 LTCFTHDNQHWQTAPFWTLGPFCACTSANNNTYWCMRTINETHNFLFCEFATGFLEYFDLNTDPYQLMNAVNTLDRDVLNQLHVQLMELRSCKGYKQC 822
The following BLAST results are available for this feature:
BLAST of TCONS_00057786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SULF21.560e-3152.04Extracellular sulfatase Sulf-2 OS=Homo sapiens GN=... [more]
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