TCONS_00057795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057795
Unique NameTCONS_00057795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057795 ID=TCONS_00057795|Name=TCONS_00057795|organism=Clytia hemisphaerica|type=transcript|length=578bp
ATTTTCGTTACAAATATCGTTGGAGCAAACAACACAACGTCGAGAACAAG
CTTGTGGAAAGTTACTTTTGATATGGTTTTGAAACAAGAGACTACCGATT
GAAGAACCGTTACATTTTACAATATCAAGTTTGATTTGATGATGAATGAG
GGTTTTGTTGATACGACTAGCAAAGCGTTCAACTGTTTTTTCGTATGATG
TACCTAAGAGAATGACCCATCTAACAGCATTAACTTCGGTTTCTGAACGT
CCAGTAGGGGTAAGGTTTCTCTGGAGGGTATGAGCTTGTTGTAAGATGTT
ATCCACCATTTGCGGACAATATCCAGAATTGATACATCTTTCTCTCAATT
TTTCAACGGCTTGAAGGAAATCACAGTCTCTAGAGCATAGGCGGCGGAGT
CTGAGTAGCTGACTTTTTACGATACCTTTAAAGCAGTGGCTAGGGTGCGC
TGATCCGAACTTAACAAAGGAGTTGGATGCTGTTTGTTTGCGAAATTCAC
GGGTATGGAACTGGCcgttttcgatgaaaatttcaatgtcGAGTAGGTGG
ATAGATTCTGAAGATATTTCATGGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00057795-protein

>TCONS_00057795-protein ID=TCONS_00057795-protein|Name=TCONS_00057795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
THEISSESIHLLDIEIFIENGQFHTREFRKQTASNSFVKFGSAHPSHCFK
GIVKSQLLRLRRLCSRDCDFLQAVEKLRERCINSGYCPQMVDNILQQAHT
LQRNLTPTGRSETEVNAVRWVILLGTSYEKTVERFASRINKTLIHHQIKL
DIVKCNGSSIGSLLFQNHIKSNFPQACSRRCVVCSNDICNEN
Run BLAST on NCBI

transcript from alignment at scaffold_298:13039..13616

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057795 ID=TCONS_00057795|Name=TCONS_00057795|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at scaffold_298:13039..13616 (Clytia hemisphaerica)
TTACCCATGAAATATCTTCAGAATCTATCCACCTACTCgacattgaaatt
ttcatcgaaaacgGCCAGTTCCATACCCGTGAATTTCGCAAACAAACAGC
ATCCAACTCCTTTGTTAAGTTCGGATCAGCGCACCCTAGCCACTGCTTTA
AAGGTATCGTAAAAAGTCAGCTACTCAGACTCCGCCGCCTATGCTCTAGA
GACTGTGATTTCCTTCAAGCCGTTGAAAAATTGAGAGAAAGATGTATCAA
TTCTGGATATTGTCCGCAAATGGTGGATAACATCTTACAACAAGCTCATA
CCCTCCAGAGAAACCTTACCCCTACTGGACGTTCAGAAACCGAAGTTAAT
GCTGTTAGATGGGTCATTCTCTTAGGTACATCATACGAAAAAACAGTTGA
ACGCTTTGCTAGTCGTATCAACAAAACCCTCATTCATCATCAAATCAAAC
TTGATATTGTAAAATGTAACGGTTCTTCAATCGGTAGTCTCTTGTTTCAA
AACCATATCAAAAGTAACTTTCCACAAGCTTGTTCTCGACGTTGTGTTGT
TTGCTCCAACGATATTTGTAACGAAAAT

Coding sequence (CDS) from alignment at scaffold_298:13039..13616

>TCONS_00057795 ID=TCONS_00057795|Name=TCONS_00057795|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_298:13039..13616 (Clytia hemisphaerica)
ACCCATGAAATATCTTCAGAATCTATCCACCTACTCgacattgaaatttt
catcgaaaacgGCCAGTTCCATACCCGTGAATTTCGCAAACAAACAGCAT
CCAACTCCTTTGTTAAGTTCGGATCAGCGCACCCTAGCCACTGCTTTAAA
GGTATCGTAAAAAGTCAGCTACTCAGACTCCGCCGCCTATGCTCTAGAGA
CTGTGATTTCCTTCAAGCCGTTGAAAAATTGAGAGAAAGATGTATCAATT
CTGGATATTGTCCGCAAATGGTGGATAACATCTTACAACAAGCTCATACC
CTCCAGAGAAACCTTACCCCTACTGGACGTTCAGAAACCGAAGTTAATGC
TGTTAGATGGGTCATTCTCTTAGGTACATCATACGAAAAAACAGTTGAAC
GCTTTGCTAGTCGTATCAACAAAACCCTCATTCATCATCAAATCAAACTT
GATATTGTAAAATGTAACGGTTCTTCAATCGGTAGTCTCTTGTTTCAAAA
CCATATCAAAAGTAACTTTCCACAAGCTTGTTCTCGACGTTGTGTTGTTT
GCTCCAACGATATTTGTAACGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036425XLOC_036425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057795-exon-scaffold_298-1491911889:13039..13616TCONS_00057795-exon-scaffold_298-1491911889:13039..13616Clytia hemisphaericaexon
TCONS_00057795-exon-scaffold_298-1510915933:13039..13616TCONS_00057795-exon-scaffold_298-1510915933:13039..13616Clytia hemisphaericaexon
TCONS_00057795-exon-scaffold_298-1575043694:13039..13616TCONS_00057795-exon-scaffold_298-1575043694:13039..13616Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057795-proteinTCONS_00057795-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:13039..13616 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.553797	0.547443	0.428125	0.437797	2.76977	2.76349	3.55285	3.92587	1.44014	1.50616	0.827747	0.977109	3.29317	0.582786	1.31787	1.94685	1.14537	2.65041	0.748464	1.05211	0.641423	0.513137	0.702666	0.544975	2.67732	2.02928	0.250579	0	0	0.162353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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