TCONS_00057796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057796
Unique NameTCONS_00057796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057796 ID=TCONS_00057796|Name=TCONS_00057796|organism=Clytia hemisphaerica|type=transcript|length=815bp
CCTTGTTAGGGTAAGTGGAATTTATTCCTCTCTATTTCCTTGCGGAGCTT
GGGAAATACGGTGCACTCACCGGGTTTGTAGGCATAAGGTAAGGTTGGTA
TAGATCCTTTCTTCGGGGGTGATTTTCTTCTCCATCTTTGAGAACATAGA
TTTAGACATCACTTTGCAACTGTCGTACAAACTCTTCCAATTGAGAGATT
TCTCATGGTCAACAGCCTTCGCCGACCTGACACTGGCCTAATTCAATTGA
AACCTTCTAGACTATATCGCACATTTCTGTTTTGGCGATGCTGATTTTCC
TGCAATTCTAAAGATCCTGAACCGATTGGCGATCGCGTTGAAGAATTAAG
AAAAAACGGTGTTATGAAATGCTATCCTGATAACGGAGTCAAAATTGGCT
CGACCCTCATGTCTTTATAAGATTGTGCAAGTAGAAATCCGTTGATTTCG
TGGATTGAATCGTGACGAGTGGGACAAAGCCTTTTTTTGTTACACACCAA
AGCGCCTTCAAAGTTGAATGACTCCCTCTTACACTAGAAAACGTTTTGAA
GACGATTCACCATATGATTAATCATATCGAATCTTGATTAAGTCCCAGAA
AGGTTGTTTGGTGATCTTGAAACCCTTGTCTCCAATTGAAAGAGTTGATA
CCAAAATTAACCTTTGCTCTCAGTTGATTTCGATGAGTTTTTTTATCTCA
TCTTACGATTGTTCATTGATCTTCTTGAGCTTTGGGCGGCAAGACCGTGC
TTGTGCTTGAAATAAAGGGCTTTCAATTTCTTAATACATATACAGAAGAC
GGTTTTTAGGGCGTA
Run BLAST on NCBI

transcript from alignment at scaffold_298:17105..17919

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057796 ID=TCONS_00057796|Name=TCONS_00057796|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at scaffold_298:17105..17919 (Clytia hemisphaerica)
TACGCCCTAAAAACCGTCTTCTGTATATGTATTAAGAAATTGAAAGCCCT
TTATTTCAAGCACAAGCACGGTCTTGCCGCCCAAAGCTCAAGAAGATCAA
TGAACAATCGTAAGATGAGATAAAAAAACTCATCGAAATCAACTGAGAGC
AAAGGTTAATTTTGGTATCAACTCTTTCAATTGGAGACAAGGGTTTCAAG
ATCACCAAACAACCTTTCTGGGACTTAATCAAGATTCGATATGATTAATC
ATATGGTGAATCGTCTTCAAAACGTTTTCTAGTGTAAGAGGGAGTCATTC
AACTTTGAAGGCGCTTTGGTGTGTAACAAAAAAAGGCTTTGTCCCACTCG
TCACGATTCAATCCACGAAATCAACGGATTTCTACTTGCACAATCTTATA
AAGACATGAGGGTCGAGCCAATTTTGACTCCGTTATCAGGATAGCATTTC
ATAACACCGTTTTTTCTTAATTCTTCAACGCGATCGCCAATCGGTTCAGG
ATCTTTAGAATTGCAGGAAAATCAGCATCGCCAAAACAGAAATGTGCGAT
ATAGTCTAGAAGGTTTCAATTGAATTAGGCCAGTGTCAGGTCGGCGAAGG
CTGTTGACCATGAGAAATCTCTCAATTGGAAGAGTTTGTACGACAGTTGC
AAAGTGATGTCTAAATCTATGTTCTCAAAGATGGAGAAGAAAATCACCCC
CGAAGAAAGGATCTATACCAACCTTACCTTATGCCTACAAACCCGGTGAG
TGCACCGTATTTCCCAAGCTCCGCAAGGAAATAGAGAGGAATAAATTCCA
CTTACCCTAACAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036426XLOC_036426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057796-exon-scaffold_298-1491911889:17105..17919TCONS_00057796-exon-scaffold_298-1491911889:17105..17919Clytia hemisphaericaexon
TCONS_00057796-exon-scaffold_298-1510915933:17105..17919TCONS_00057796-exon-scaffold_298-1510915933:17105..17919Clytia hemisphaericaexon
TCONS_00057796-exon-scaffold_298-1575043694:17105..17919TCONS_00057796-exon-scaffold_298-1575043694:17105..17919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:17105..17919 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.196575	0.57842	0.270958	0.143041	0	0.383725	0.672577	0.741533	0.450458	0.696018	2.13485	1.4367	0.0807308	0.811179	0.425689	0.975581	0.859336	0.78375	0.37144	0.480482	0.513051	0.674953	0.732682	0.461695	0.201641	0.294885	0.240827	0.275732	0.233691	0.657246
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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