TCONS_00057798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057798
Unique NameTCONS_00057798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057798 ID=TCONS_00057798|Name=TCONS_00057798|organism=Clytia hemisphaerica|type=transcript|length=395bp
AATTTTATGGGAGAGATTTCCATTAATTTCTTGTATGATTCGAGTTGCTC
TGTATCGAAGAATTCACTCATATAAATTATAAAGCTGTATGGCAACGGAA
ACTCGTCGGCAATGGCAATTGTCTATGTCAATGTCAATTGTCAACTATGG
CAATGTCGACACTACTGACACTGCTGGACCTTAACGCCACTTAGGCTTTC
TTGTTGTATTTAGCTAGGTCAAGGGTCGGCCTTTTTCCCGCCCAAGGGTC
GGGGTTAATATAAATTGccgtcattttttagaaaacgcAGCCGCGTCATT
TTCGGAAACACGCGGTCGCgtcttttttcagaaacatgcggccgcgtctt
ttttcagaaacataaaatatcataaaatcataaaatgacACGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_298:24196..24590

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057798 ID=TCONS_00057798|Name=TCONS_00057798|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_298:24196..24590 (Clytia hemisphaerica)
CTGCGTgtcattttatgattttatgatattttatgtttctgaaaaaagac
gcggccgcatgtttctgaaaaaagacGCGACCGCGTGTTTCCGAAAATGA
CGCGGCTgcgttttctaaaaaatgacggCAATTTATATTAACCCCGACCC
TTGGGCGGGAAAAAGGCCGACCCTTGACCTAGCTAAATACAACAAGAAAG
CCTAAGTGGCGTTAAGGTCCAGCAGTGTCAGTAGTGTCGACATTGCCATA
GTTGACAATTGACATTGACATAGACAATTGCCATTGCCGACGAGTTTCCG
TTGCCATACAGCTTTATAATTTATATGAGTGAATTCTTCGATACAGAGCA
ACTCGAATCATACAAGAAATTAATGGAAATCTCTCCCATAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036428XLOC_036428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057798-exon-scaffold_298-1491911889:24196..24590TCONS_00057798-exon-scaffold_298-1491911889:24196..24590Clytia hemisphaericaexon
TCONS_00057798-exon-scaffold_298-1510915933:24196..24590TCONS_00057798-exon-scaffold_298-1510915933:24196..24590Clytia hemisphaericaexon
TCONS_00057798-exon-scaffold_298-1575043694:24196..24590TCONS_00057798-exon-scaffold_298-1575043694:24196..24590Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:24196..24590 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190741	0	0	0.845157	0.514449	0.203262	0	0.229579	0.4822	0.398189	0.193246	0.762193	0.507422	0	0.649853	0.929855	0.715941	0.146763	0	1.06088	0.553256	0.809577	0.218699	0.596488	0.614369	0.54831	0.261543	0.279126	0	0.215696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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