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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057801 ID=TCONS_00057801|Name=TCONS_00057801|organism=Clytia hemisphaerica|type=transcript|length=1084bp
AACGATTTTTAGATCAAAGGGGTTGTTTCTGGAGGTTGAGTATCCAAATA
AATTCAGCTTATAATTCTAGACTATTTACCTTTCAGacattattttatat
tttataacgTCTTTTGTGAAATATAATTTGCTAGCTGGCATCAACTTTCC
CtatgtttataaataaaatactTGTATAATACTAAAAAAATGTCAGGACA
AAATTAGGTTCAACTGGCAGGTTTATCATAAATTTCTGTGTTTCTAAGAA
AGGTTGGCAGTATatgattaattttttcaatttttttagtaGAAATACCG
TTGAAAGCACAGTAGCTCGTTATCAATGACAAGATTCGTTGAAATTCTGA
TAATTAAAGATAATAAAACGCTCTTATTGATAATAGCCTGCTACTTGGAC
GTCTTTAAATTAAAATACGTTAAAAGAGATTGGCAGCACCTCTACACATT
GAAGCTTTCAATCCTTCTTGaacttcctttttttttcagcctCAGAACAT
TCCtgtgaaattttattttcatggtTGTGAAAGCAATCCAATCCATCTTC
AAATTTAATAGTGATTTCCTCCCCAATCTGTGAATTAATTTCTTCAATCG
GTATAGACTGATCAAAACAATTCATTCAATCGTTaatattttctgaattt
ttattttccaaaatgttcatcaattttagactttcattctcaTCATCTTG
AGGTTTTGACTCAGCTTCAAGTTTATTGataatttcacaatttttggGGT
TTGTTTCTTCGGATGATGTAACATCATTCCCCTttacatttctacaagaa
atttTAAATAGTTCATTTTCACGGTTTTTGAATGGTTCCAAAATCTCGTC
GTCTGGATATCCAATTGATTCATTTCCCAGTTTGATAACAATTTCCAAAT
GTTCGTGTTTCGTTTCATCACAACCatgaatttcttcttcttcaattttt
atttttattttttcaatctcattcattttttaaacaaaacactCTAAATG
AAAGAAAGATACAGTACCAGAATTGAAATTAATATGCTTGAAAATGTCTA
AAGAAGTGTTAAATATAATTGTTgcagaaattta Run BLAST on NCBI protein sequence of TCONS_00057801-protein >TCONS_00057801-protein ID=TCONS_00057801-protein|Name=TCONS_00057801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MNEIEKIKIKIEEEEIHGCDETKHEHLEIVIKLGNESIGYPDDEILEPFK
NRENELFKISCRNVKGNDVTSSEETNPKNCEIINKLEAESKPQDDENESL
KLMNILENKNSENIND Run BLAST on NCBI transcript from alignment at scaffold_298:41751..42834 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057801 ID=TCONS_00057801|Name=TCONS_00057801|organism=Clytia hemisphaerica|type=transcript|length=1084bp|location=Sequence derived from alignment at scaffold_298:41751..42834 (Clytia hemisphaerica)
taaatttctgcAACAATTATATTTAACACTTCTTTAGACATTTTCAAGCA
TATTAATTTCAATTCTGGTACTGTATCTTTCTTTCATTTAGagtgttttg
tttaaaaaatgaatgagattgaaaaaataaaaataaaaattgaagaagaa
gaaattcatGGTTGTGATGAAACGAAACACGAACATTTGGAAATTGTTAT
CAAACTGGGAAATGAATCAATTGGATATCCAGACGACGAGATTTTGGAAC
CATTCAAAAACCGTGAAAATGAACTATTTAaaatttcttgtagaaatgta
aAGGGGAATGATGTTACATCATCCGAAGAAACAAACCccaaaaattgtga
aattatCAATAAACTTGAAGCTGAGTCAAAACCTCAAGATGAtgagaatg
aaagtctaaaattgatgaacattttggaaaataaaaattcagaaaatatt
AACGATTGAATGAATTGTTTTGATCAGTCTATACCGATTGAAGAAATTAA
TTCACAGATTGGGGAGGAAATCACTATTAAATTTGAAGATGGATTGGATT
GCTTTCACAaccatgaaaataaaatttcacaGGAATGTTCTGaggctgaa
aaaaaaaggaagttCAAGAAGGATTGAAAGCTTCAATGTGTAGAGGTGCT
GCCAATCTCTTTTAACGTATTTTAATTTAAAGACGTCCAAGTAGCAGGCT
ATTATCAATAAGAGCGTTTTATTATCTTTAATTATCAGAATTTCAACGAA
TCTTGTCATTGATAACGAGCTACTGTGCTTTCAACGGTATTTCtactaaa
aaaattgaaaaaattaatcatATACTGCCAACCTTTCTTAGAAACACAGA
AATTTATGATAAACCTGCCAGTTGAACCTAATTTTGTCCTGACATTTTTT
TAGTATTATACAagtattttatttataaacataGGGAAAGTTGATGCCAG
CTAGCAAATTATATTTCACAAAAGAcgttataaaatataaaataatgtCT
GAAAGGTAAATAGTCTAGAATTATAAGCTGAATTTATTTGGATACTCAAC
CTCCAGAAACAACCCCTTTGATCTAAAAATCGTT Coding sequence (CDS) from alignment at scaffold_298:41751..42834 >TCONS_00057801 ID=TCONS_00057801|Name=TCONS_00057801|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_298:41751..42834 (Clytia hemisphaerica)
atgaatgagattgaaaaaataaaaataaaaattgaagaagaagaaattca
tGGTTGTGATGAAACGAAACACGAACATTTGGAAATTGTTATCAAACTGG
GAAATGAATCAATTGGATATCCAGACGACGAGATTTTGGAACCATTCAAA
AACCGTGAAAATGAACTATTTAaaatttcttgtagaaatgtaaAGGGGAA
TGATGTTACATCATCCGAAGAAACAAACCccaaaaattgtgaaattatCA
ATAAACTTGAAGCTGAGTCAAAACCTCAAGATGAtgagaatgaaagtcta
aaattgatgaacattttggaaaataaaaattcagaaaatattAACGATTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057801-exon-scaffold_298-1491911889:41751..42834 | TCONS_00057801-exon-scaffold_298-1491911889:41751..42834 | Clytia hemisphaerica | exon |
| TCONS_00057801-exon-scaffold_298-1510915933:41751..42834 | TCONS_00057801-exon-scaffold_298-1510915933:41751..42834 | Clytia hemisphaerica | exon |
| TCONS_00057801-exon-scaffold_298-1575043694:41751..42834 | TCONS_00057801-exon-scaffold_298-1575043694:41751..42834 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_298 | supercontig | scaffold_298:41751..42834 . |
Blast
The following BLAST results are available for this feature:
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