TCONS_00057807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057807
Unique NameTCONS_00057807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057807 ID=TCONS_00057807|Name=TCONS_00057807|organism=Clytia hemisphaerica|type=transcript|length=395bp
attttttatgtcctATATTCCGCTTCTTTTTAAAACTGTACATATTATAT
ACCTAACTACTttgggtgataaaagagatatatatatatatactttTGTT
TTGGGTTTACTATTATGTGAACTTTCTGAAGTCTCAATTCAATTTACTAG
GATCCTCTTTAATCACATCAGCAGCTTTTTCAGCGATCATAATTGTAGGT
GCAGTAGTATTTCCACCGACAATGGTTGGCATGATTGATGCATCGACAAC
ACGTAATCCTTTGATACCATAAACTTTCAATGTTGAATCTACAACTGCTT
GATCATCATTAGGGGTCCCATCTTGCACGTACCCACTGGGTGGTAGAGTG
TCGCTGCTCCTCGTTTCGCTAaacatttgtaaaaatcatCTGATC
Run BLAST on NCBI

transcript from alignment at scaffold_298:162632..163026

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057807 ID=TCONS_00057807|Name=TCONS_00057807|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at scaffold_298:162632..163026 (Clytia hemisphaerica)
GATCAGatgatttttacaaatgttTAGCGAAACGAGGAGCAGCGACACTC TACCACCCAGTGGGTACGTGCAAGATGGGACCCCTAATGATGATCAAGCA GTTGTAGATTCAACATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGT CGATGCATCAATCATGCCAACCATTGTCGGTGGAAATACTACTGCACCTA CAATTATGATCGCTGAAAAAGCTGCTGATGTGATTAAAGAGGATCCTAGT AAATTGAATTGAGACTTCAGAAAGTTCACATAATAGTAAACCCAAAACAa aagtatatatatatatatctcttttatcacccaaAGTAGTTAGGTATATA ATATGTACAGTTTTAAAAAGAAGCGGAATATaggacataaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036437XLOC_036437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057807-exon-scaffold_298-1491911889:162632..163026TCONS_00057807-exon-scaffold_298-1491911889:162632..163026Clytia hemisphaericaexon
TCONS_00057807-exon-scaffold_298-1510915933:162632..163026TCONS_00057807-exon-scaffold_298-1510915933:162632..163026Clytia hemisphaericaexon
TCONS_00057807-exon-scaffold_298-1575043694:162632..163026TCONS_00057807-exon-scaffold_298-1575043694:162632..163026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:162632..163026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (12.3915 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05258 2.14177 0.576271 0.82724 0 1.42283 0.245227 0.229579 0.321467 0.620328 0 0.677443 3.83174 5.95625 5.13628 7.60467 1.91262 4.48257 12.3915 9.04517 0.524889 0.592999 1.67428 1.83547 1.43353 0.91385 0.290166 0.656545 2.28256 1.27794
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
50100150200250300350Expect = 7.37e-19 / Id = 50.63SequenceCHDH
Match NameE-valueIdentityDescription
CHDH7.371e-1950.63Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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