TCONS_00057812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057812
Unique NameTCONS_00057812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=transcript|length=1309bp
tATGAATTGACCTATTTTGACATACATATTATTTCCAAAAGGAAAGCTGC
TTTAAGACAGTCATCAGACTTTAGTATAAAAGCTAGCAGGTTTAGATTTA
ACTTCGTCAcattcaaatcaatcaaaatggCAGACTCACAGTGGGAGAAA
GAACTTCGACAAAATCTATTGGATCTGTTGACAGCTTCGTTTCGAGATAA
TGATTCCCTGAGCGAAGAATTAAAAAAGTACGCCATCAAAAATCATTTGC
TTGATGACATCACAAACTTCATCCAAAATGAACACCGCTTATTTGATCAG
AAGATTCGATTATGCAGAGAGAAAGATTTGCAgacaaaaatcaatgaaat
tatCGAACggaaaaattatttctacatTGGGTCAATGAAAAATATCACCT
ACAACTTATGGCAAATTCAACCGTCAGccgaaaaaagtaaaaaatggaAA
GCCTACACATCTAAACATCTTCAGGAAGGTGAGAAACTTCAAACCTTCTA
TTCCCACGTGACCGAAAATGCTGAGAAGCGAGGCAGGAAAATGATCGAGA
CAAATAAGGATAGCATGTTTTGTCTCAACGATGAAGAGCTTGAAGAAAAT
CTCAATGGAGAAGAGAAAGGAGTTATCTTTGTTTTGGAATATTCCAAAAT
ATCTTACAAGATTTTGGTGGCTGGTGATTGCCTTCTCAATGGTATCAAGT
CACGAAAATTACACGAAATTCATAAAAGTGAAGTCGTGGTCTACCCAAGA
GCAACAACGGGGAAGTTGTTCAAAAATTACACAAAAGGGATCTTACGGTC
TCCTCCTGACGTGTTGATTCTACATTTTGGGACGTATGATCTCACCCTGG
GTGGTGAAGCAAAAGACAccattcaaaacattcgaaattttaTTCGACGC
ACCAAGGAGAAGAGCCCACGAATCACAATCGCACTCTCCTCCATCTTAGT
TCGTGTAGATCGTAAAGGCATGCGCAGTGCAATAAAACATTTGAACAGCC
AATTAAAAAAACTCTGCGCTGAAGAGAGTGTTGATTTCATAAATAATGAA
AATGTGACGGAACCGATGCTTTGTCAGAAAATGTTGCTCACTTTGAACGC
AGAAGGAAAGAACACACtggctcaaaatatttcaacataCATTAATGAAC
TATTAtaagtttttgaattgttaactttttcccgACTGAAGTTCTACCCA
TGTGTCCAGGGTTGAGTTGTTTAGCATTTGGAAAGAACACACTGGCTCGA
AATATTTCAACATATATCAATGAACTATTATAGTTTTtgaattgttaact
ttttccccA
Run BLAST on NCBI

protein sequence of TCONS_00057812-protein

>TCONS_00057812-protein ID=TCONS_00057812-protein|Name=TCONS_00057812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
YELTYFDIHIISKRKAALRQSSDFSIKASRFRFNFVTFKSIKMADSQWEK
ELRQNLLDLLTASFRDNDSLSEELKKYAIKNHLLDDITNFIQNEHRLFDQ
KIRLCREKDLQTKINEIIERKNYFYIGSMKNITYNLWQIQPSAEKSKKWK
AYTSKHLQEGEKLQTFYSHVTENAEKRGRKMIETNKDSMFCLNDEELEEN
LNGEEKGVIFVLEYSKISYKILVAGDCLLNGIKSRKLHEIHKSEVVVYPR
ATTGKLFKNYTKGILRSPPDVLILHFGTYDLTLGGEAKDTIQNIRNFIRR
TKEKSPRITIALSSILVRVDRKGMRSAIKHLNSQLKKLCAEESVDFINNE
NVTEPMLCQKMLLTLNAEGKNTLAQNISTYINELL
Run BLAST on NCBI

transcript from alignment at scaffold_298:204272..205580

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at scaffold_298:204272..205580 (Clytia hemisphaerica)
TggggaaaaagttaacaattcaAAAACTATAATAGTTCATTGATATATGT TGAAATATTTCGAGCCAGTGTGTTCTTTCCAAATGCTAAACAACTCAACC CTGGACACATGGGTAGAACTTCAGTcgggaaaaagttaacaattcaaaaa cttaTAATAGTTCATTAATGtatgttgaaatattttgagccaGTGTGTTC TTTCCTTCTGCGTTCAAAGTGAGCAACATTTTCTGACAAAGCATCGGTTC CGTCACATTTTCATTATTTATGAAATCAACACTCTCTTCAGCGCAGAGTT TTTTTAATTGGCTGTTCAAATGTTTTATTGCACTGCGCATGCCTTTACGA TCTACACGAACTAAGATGGAGGAGAGTGCGATTGTGATTCGTGGGCTCTT CTCCTTGGTGCGTCGAAtaaaatttcgaatgttttgaatggTGTCTTTTG CTTCACCACCCAGGGTGAGATCATACGTCCCAAAATGTAGAATCAACACG TCAGGAGGAGACCGTAAGATCCCTTTTGTGTAATTTTTGAACAACTTCCC CGTTGTTGCTCTTGGGTAGACCACGACTTCACTTTTATGAATTTCGTGTA ATTTTCGTGACTTGATACCATTGAGAAGGCAATCACCAGCCACCAAAATC TTGTAAGATATTTTGGAATATTCCAAAACAAAGATAACTCCTTTCTCTTC TCCATTGAGATTTTCTTCAAGCTCTTCATCGTTGAGACAAAACATGCTAT CCTTATTTGTCTCGATCATTTTCCTGCCTCGCTTCTCAGCATTTTCGGTC ACGTGGGAATAGAAGGTTTGAAGTTTCTCACCTTCCTGAAGATGTTTAGA TGTGTAGGCTTtccattttttacttttttcggCTGACGGTTGAATTTGCC ATAAGTTGTAGGTGATATTTTTCATTGACCCAatgtagaaataatttttc cGTTCGataatttcattgatttttgtcTGCAAATCTTTCTCTCTGCATAA TCGAATCTTCTGATCAAATAAGCGGTGTTCATTTTGGATGAAGTTTGTGA TGTCATCAAGCAAATGATTTTTGATGGCGTACTTTTTTAATTCTTCGCTC AGGGAATCATTATCTCGAAACGAAGCTGTCAACAGATCCAATAGATTTTG TCGAAGTTCTTTCTCCCACTGTGAGTCTGccattttgattgatttgaatg TGACGAAGTTAAATCTAAACCTGCTAGCTTTTATACTAAAGTCTGATGAC TGTCTTAAAGCAGCTTTCCTTTTGGAAATAATATGTATGTCAAAATAGGT CAATTCATa

Coding sequence (CDS) from alignment at scaffold_298:204272..205580

>TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_298:204272..205580 (Clytia hemisphaerica)
ttaTAATAGTTCATTAATGtatgttgaaatattttgagccaGTGTGTTCT
TTCCTTCTGCGTTCAAAGTGAGCAACATTTTCTGACAAAGCATCGGTTCC
GTCACATTTTCATTATTTATGAAATCAACACTCTCTTCAGCGCAGAGTTT
TTTTAATTGGCTGTTCAAATGTTTTATTGCACTGCGCATGCCTTTACGAT
CTACACGAACTAAGATGGAGGAGAGTGCGATTGTGATTCGTGGGCTCTTC
TCCTTGGTGCGTCGAAtaaaatttcgaatgttttgaatggTGTCTTTTGC
TTCACCACCCAGGGTGAGATCATACGTCCCAAAATGTAGAATCAACACGT
CAGGAGGAGACCGTAAGATCCCTTTTGTGTAATTTTTGAACAACTTCCCC
GTTGTTGCTCTTGGGTAGACCACGACTTCACTTTTATGAATTTCGTGTAA
TTTTCGTGACTTGATACCATTGAGAAGGCAATCACCAGCCACCAAAATCT
TGTAAGATATTTTGGAATATTCCAAAACAAAGATAACTCCTTTCTCTTCT
CCATTGAGATTTTCTTCAAGCTCTTCATCGTTGAGACAAAACATGCTATC
CTTATTTGTCTCGATCATTTTCCTGCCTCGCTTCTCAGCATTTTCGGTCA
CGTGGGAATAGAAGGTTTGAAGTTTCTCACCTTCCTGAAGATGTTTAGAT
GTGTAGGCTTtccattttttacttttttcggCTGACGGTTGAATTTGCCA
TAAGTTGTAGGTGATATTTTTCATTGACCCAatgtagaaataatttttcc
GTTCGataatttcattgatttttgtcTGCAAATCTTTCTCTCTGCATAAT
CGAATCTTCTGATCAAATAAGCGGTGTTCATTTTGGATGAAGTTTGTGAT
GTCATCAAGCAAATGATTTTTGATGGCGTACTTTTTTAATTCTTCGCTCA
GGGAATCATTATCTCGAAACGAAGCTGTCAACAGATCCAATAGATTTTGT
CGAAGTTCTTTCTCCCACTGTGAGTCTGccattttgattgatttgaatgT
GACGAAGTTAAATCTAAACCTGCTAGCTTTTATACTAAAGTCTGATGACT
GTCTTAAAGCAGCTTTCCTTTTGGAAATAATATGTATGTCAAAATAGGTC
AATTCATa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036442XLOC_036442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057812-exon-scaffold_298-1491911889:204272..205580TCONS_00057812-exon-scaffold_298-1491911889:204272..205580Clytia hemisphaericaexon
TCONS_00057812-exon-scaffold_298-1510915933:204272..205580TCONS_00057812-exon-scaffold_298-1510915933:204272..205580Clytia hemisphaericaexon
TCONS_00057812-exon-scaffold_298-1575043694:204272..205580TCONS_00057812-exon-scaffold_298-1575043694:204272..205580Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057812-proteinTCONS_00057812-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:204272..205580 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (16.3599 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0322525 0 0 0.0357271 0 0 0.124397 0.0776393 0.108714 0 0 0 3.92537 3.05183 0 0.0589613 0 0 7.26844 16.3599 0 0 0 0.134481 0 0.0927142 0 0 0.0715955 0.0364722
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000110012001300Sequence
Match NameE-valueIdentityDescription
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