Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=transcript|length=1309bp tATGAATTGACCTATTTTGACATACATATTATTTCCAAAAGGAAAGCTGC TTTAAGACAGTCATCAGACTTTAGTATAAAAGCTAGCAGGTTTAGATTTA ACTTCGTCAcattcaaatcaatcaaaatggCAGACTCACAGTGGGAGAAA GAACTTCGACAAAATCTATTGGATCTGTTGACAGCTTCGTTTCGAGATAA TGATTCCCTGAGCGAAGAATTAAAAAAGTACGCCATCAAAAATCATTTGC TTGATGACATCACAAACTTCATCCAAAATGAACACCGCTTATTTGATCAG AAGATTCGATTATGCAGAGAGAAAGATTTGCAgacaaaaatcaatgaaat tatCGAACggaaaaattatttctacatTGGGTCAATGAAAAATATCACCT ACAACTTATGGCAAATTCAACCGTCAGccgaaaaaagtaaaaaatggaAA GCCTACACATCTAAACATCTTCAGGAAGGTGAGAAACTTCAAACCTTCTA TTCCCACGTGACCGAAAATGCTGAGAAGCGAGGCAGGAAAATGATCGAGA CAAATAAGGATAGCATGTTTTGTCTCAACGATGAAGAGCTTGAAGAAAAT CTCAATGGAGAAGAGAAAGGAGTTATCTTTGTTTTGGAATATTCCAAAAT ATCTTACAAGATTTTGGTGGCTGGTGATTGCCTTCTCAATGGTATCAAGT CACGAAAATTACACGAAATTCATAAAAGTGAAGTCGTGGTCTACCCAAGA GCAACAACGGGGAAGTTGTTCAAAAATTACACAAAAGGGATCTTACGGTC TCCTCCTGACGTGTTGATTCTACATTTTGGGACGTATGATCTCACCCTGG GTGGTGAAGCAAAAGACAccattcaaaacattcgaaattttaTTCGACGC ACCAAGGAGAAGAGCCCACGAATCACAATCGCACTCTCCTCCATCTTAGT TCGTGTAGATCGTAAAGGCATGCGCAGTGCAATAAAACATTTGAACAGCC AATTAAAAAAACTCTGCGCTGAAGAGAGTGTTGATTTCATAAATAATGAA AATGTGACGGAACCGATGCTTTGTCAGAAAATGTTGCTCACTTTGAACGC AGAAGGAAAGAACACACtggctcaaaatatttcaacataCATTAATGAAC TATTAtaagtttttgaattgttaactttttcccgACTGAAGTTCTACCCA TGTGTCCAGGGTTGAGTTGTTTAGCATTTGGAAAGAACACACTGGCTCGA AATATTTCAACATATATCAATGAACTATTATAGTTTTtgaattgttaact ttttccccA Run BLAST on NCBI protein sequence of TCONS_00057812-protein >TCONS_00057812-protein ID=TCONS_00057812-protein|Name=TCONS_00057812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
YELTYFDIHIISKRKAALRQSSDFSIKASRFRFNFVTFKSIKMADSQWEK ELRQNLLDLLTASFRDNDSLSEELKKYAIKNHLLDDITNFIQNEHRLFDQ KIRLCREKDLQTKINEIIERKNYFYIGSMKNITYNLWQIQPSAEKSKKWK AYTSKHLQEGEKLQTFYSHVTENAEKRGRKMIETNKDSMFCLNDEELEEN LNGEEKGVIFVLEYSKISYKILVAGDCLLNGIKSRKLHEIHKSEVVVYPR ATTGKLFKNYTKGILRSPPDVLILHFGTYDLTLGGEAKDTIQNIRNFIRR TKEKSPRITIALSSILVRVDRKGMRSAIKHLNSQLKKLCAEESVDFINNE NVTEPMLCQKMLLTLNAEGKNTLAQNISTYINELL Run BLAST on NCBI transcript from alignment at scaffold_298:204272..205580 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at scaffold_298:204272..205580 (Clytia hemisphaerica) TggggaaaaagttaacaattcaAAAACTATAATAGTTCATTGATATATGT
TGAAATATTTCGAGCCAGTGTGTTCTTTCCAAATGCTAAACAACTCAACC
CTGGACACATGGGTAGAACTTCAGTcgggaaaaagttaacaattcaaaaa
cttaTAATAGTTCATTAATGtatgttgaaatattttgagccaGTGTGTTC
TTTCCTTCTGCGTTCAAAGTGAGCAACATTTTCTGACAAAGCATCGGTTC
CGTCACATTTTCATTATTTATGAAATCAACACTCTCTTCAGCGCAGAGTT
TTTTTAATTGGCTGTTCAAATGTTTTATTGCACTGCGCATGCCTTTACGA
TCTACACGAACTAAGATGGAGGAGAGTGCGATTGTGATTCGTGGGCTCTT
CTCCTTGGTGCGTCGAAtaaaatttcgaatgttttgaatggTGTCTTTTG
CTTCACCACCCAGGGTGAGATCATACGTCCCAAAATGTAGAATCAACACG
TCAGGAGGAGACCGTAAGATCCCTTTTGTGTAATTTTTGAACAACTTCCC
CGTTGTTGCTCTTGGGTAGACCACGACTTCACTTTTATGAATTTCGTGTA
ATTTTCGTGACTTGATACCATTGAGAAGGCAATCACCAGCCACCAAAATC
TTGTAAGATATTTTGGAATATTCCAAAACAAAGATAACTCCTTTCTCTTC
TCCATTGAGATTTTCTTCAAGCTCTTCATCGTTGAGACAAAACATGCTAT
CCTTATTTGTCTCGATCATTTTCCTGCCTCGCTTCTCAGCATTTTCGGTC
ACGTGGGAATAGAAGGTTTGAAGTTTCTCACCTTCCTGAAGATGTTTAGA
TGTGTAGGCTTtccattttttacttttttcggCTGACGGTTGAATTTGCC
ATAAGTTGTAGGTGATATTTTTCATTGACCCAatgtagaaataatttttc
cGTTCGataatttcattgatttttgtcTGCAAATCTTTCTCTCTGCATAA
TCGAATCTTCTGATCAAATAAGCGGTGTTCATTTTGGATGAAGTTTGTGA
TGTCATCAAGCAAATGATTTTTGATGGCGTACTTTTTTAATTCTTCGCTC
AGGGAATCATTATCTCGAAACGAAGCTGTCAACAGATCCAATAGATTTTG
TCGAAGTTCTTTCTCCCACTGTGAGTCTGccattttgattgatttgaatg
TGACGAAGTTAAATCTAAACCTGCTAGCTTTTATACTAAAGTCTGATGAC
TGTCTTAAAGCAGCTTTCCTTTTGGAAATAATATGTATGTCAAAATAGGT
CAATTCATa Coding sequence (CDS) from alignment at scaffold_298:204272..205580 >TCONS_00057812 ID=TCONS_00057812|Name=TCONS_00057812|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_298:204272..205580 (Clytia hemisphaerica) ttaTAATAGTTCATTAATGtatgttgaaatattttgagccaGTGTGTTCT TTCCTTCTGCGTTCAAAGTGAGCAACATTTTCTGACAAAGCATCGGTTCC GTCACATTTTCATTATTTATGAAATCAACACTCTCTTCAGCGCAGAGTTT TTTTAATTGGCTGTTCAAATGTTTTATTGCACTGCGCATGCCTTTACGAT CTACACGAACTAAGATGGAGGAGAGTGCGATTGTGATTCGTGGGCTCTTC TCCTTGGTGCGTCGAAtaaaatttcgaatgttttgaatggTGTCTTTTGC TTCACCACCCAGGGTGAGATCATACGTCCCAAAATGTAGAATCAACACGT CAGGAGGAGACCGTAAGATCCCTTTTGTGTAATTTTTGAACAACTTCCCC GTTGTTGCTCTTGGGTAGACCACGACTTCACTTTTATGAATTTCGTGTAA TTTTCGTGACTTGATACCATTGAGAAGGCAATCACCAGCCACCAAAATCT TGTAAGATATTTTGGAATATTCCAAAACAAAGATAACTCCTTTCTCTTCT CCATTGAGATTTTCTTCAAGCTCTTCATCGTTGAGACAAAACATGCTATC CTTATTTGTCTCGATCATTTTCCTGCCTCGCTTCTCAGCATTTTCGGTCA CGTGGGAATAGAAGGTTTGAAGTTTCTCACCTTCCTGAAGATGTTTAGAT GTGTAGGCTTtccattttttacttttttcggCTGACGGTTGAATTTGCCA TAAGTTGTAGGTGATATTTTTCATTGACCCAatgtagaaataatttttcc GTTCGataatttcattgatttttgtcTGCAAATCTTTCTCTCTGCATAAT CGAATCTTCTGATCAAATAAGCGGTGTTCATTTTGGATGAAGTTTGTGAT GTCATCAAGCAAATGATTTTTGATGGCGTACTTTTTTAATTCTTCGCTCA GGGAATCATTATCTCGAAACGAAGCTGTCAACAGATCCAATAGATTTTGT CGAAGTTCTTTCTCCCACTGTGAGTCTGccattttgattgatttgaatgT GACGAAGTTAAATCTAAACCTGCTAGCTTTTATACTAAAGTCTGATGACT GTCTTAAAGCAGCTTTCCTTTTGGAAATAATATGTATGTCAAAATAGGTC AATTCATa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057812-exon-scaffold_298-1491911889:204272..205580 | TCONS_00057812-exon-scaffold_298-1491911889:204272..205580 | Clytia hemisphaerica | exon |
TCONS_00057812-exon-scaffold_298-1510915933:204272..205580 | TCONS_00057812-exon-scaffold_298-1510915933:204272..205580 | Clytia hemisphaerica | exon |
TCONS_00057812-exon-scaffold_298-1575043694:204272..205580 | TCONS_00057812-exon-scaffold_298-1575043694:204272..205580 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_298 | supercontig | scaffold_298:204272..205580 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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