TCONS_00057815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057815
Unique NameTCONS_00057815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=transcript|length=2858bp
TGGAGGGGGAGTGCGGGGGTGTGGTCTTGTAGTAAGCGACATTTTGACGT
TAGTCATGGGAAAGAATTGATATGTGAGTCGCTCCTTATGTATCTTCCTA
TGTATGtatcttaactttttttcagctttctaaaaatgaaaaagaaattt
taaagaaatgatGACAACgaaacatttactttcgatCCTGATTATTTTGA
TGACCATCCACAATGCATTTCCCATGATGCATCCTCTTAATCGTGAATAC
ACTATCGTTAAACTCATCACAAGATGTGACGGACGAAATATAATGGGCAa
cgaaatttcaaaacagattAACAAGACTATTGGACACGTTTTTTCGTTTG
TTTACGAATTTATTGAGTTTGATATTTGTGATGAAAAGCCAGAGGAAGGA
CAATTTCAGTTGACCAGACTTTTATCATCTCTTCTTCTCGAACCAAGATG
GCGACGCAAAATCGAAACCAATGATACGTATTATTTATCACCAAAGTGGG
ACCAAATTACCAGTTCAGACGAATATCGCATTTTAGGCATTGTAACATAC
TTAAGTCACACGCTATTACAGAGAACGAttgagattttgaaattttcaaa
aatcatgatcTACCCAATGACGAGACAAAAAGAGTCATCGGAGTGGTTCG
AGAGACAGGAAACCGTTCTACCGGCAATGCAAAGAGAACAGAGTACAGAA
TCCATCataaaaacattacttaaaAAACATTCACAATGGAAAAACATATT
AATTATTGAGCTAATTACTAAAAAACAACCACAACCTTCCCTACGTATCG
AAATGATTCAACGTAGATTTCAATCACGACGTAACATACGTTATTGGGCG
ACACCAGACTTTATGAAGAAGAAAGATACCATCTTCCAAAAACTGAAGAA
AGAATCTAGCGACCAACTCGTAATAGTGGTTGGTGGGGCAGCGGGTATCT
TTATGGCTTTGGCACAGAGGGAACATAACATTACTAACCGAAATTGGATT
CTTTTTGCTAATCTAAACAGACAAAGTGGTCTTCCCGACTATGTCTGTTT
TATTGGTGTTCTTGGGCATTTGGACGTAACCACGTTACCACTCTACCACA
ATAAAACATTTTGTGCTCAGAAAAGAACTTGGAGGCTGACCCAAATCAAT
AAAAGTCGTCATAAAAAGCAAATAAACTTAACGTGCGGGATGACAACCCA
AAAATTAGAGAAAACCATAGAAATTCAAATGTCACAGAGCATAATACACA
TGCGAGgtgtttttcaagaaaaaaatagttACCAAATTGAACAGTTAAGA
AATAAAACACTCAGTACTGTCGATCGAATTGATGATATTAATTTCGGACG
acccaaaaaacgtaaaatgaaattcaacataaacaccACTATAGAGTTTT
GCGAGCATGTGGAAGTACGTCATATAAATGGCTCATCAGATTTCGTAAAA
CAATTTGACTATACATGTTTGAAATGTCAAAATACATCATATCTGGATAA
AGGATCTTGCCATATGTGTGTTGGTGGTGAAATACCCAATCACAACCAAA
CAGCATGTTATTACCCCTTCGAAGAAAGCAACAATGACATTATTTATCAC
ATCACAACAGTTTTTGACACGCTTGGTATTATCCTCTGTTTATTCATATT
AACAGTATTCATCAAATATCGTAATACACCGGTCGTGCGTTCAAGCCATT
TCACTCTATCCATGCTCCAAGTTATTTGCTGTCTTAGTCTTNAGTCGTGC
GTTCAAGCCACTTCACCCTATCCATGCTCCAAGTTATTTGCTGTCTTAGT
CTTTTCGTTATCTTCATGAGTTCAGTTTCGTTAGAACCTGACGTTTTCAG
ATGTACGTCACGTCAGTACGGCGTCAGTTTGTTACTGATCATTGTTAACG
CAATCGTAGTCTGCAAATCAGAAATGATAATCACGATCTGCTCAATGAGG
ACAGTTCTTTGTCGGAAAACGAAACGCGATCTCTTCCGAAAGCAAGCTTT
GATTTTCATCCTTATCGTTGTAATCGATCTTTCAATCATGGGATCCAGTT
TCCCGCATCCCTCGCGACCGATCGTAAACATTAAGCGAACAGATGCGTAC
GGCAATAAATATCTGACCTTAGCGTGTGATCTCGGAGAGAAGAGCTATCT
ACAGGTCGCATATTGTATATTCTTGTTAATGCTATCACTAGGACAAGCAA
TGCGCGGACATGGTCGATTACCGGATGCCTATAACGAAGGGAATGCTATC
ATAGCATCATCGGCAACCTCAGCCTGTTGTCTACTTTTTCTTCTTATATA
CGGAAGCATGAGTAAAGTCTCCATCAAGCAGAACGATTTCGTACCCATCA
TTTGTATAACATTATCCATTAATCTCATCACCTTAATACTTTGTTTATAC
TCCAGTAAAATTTATATAATcatctttcaaaagaaaaggaACACAAAATC
TTTCGTTAAAACTTTTAATAAACAAATGGAATATGTGGCGAAACATTGCG
ACTCCAGACGACGCAAGGTGACGCAAATGAGCCGGATGACGAGTGTGACT
TTCGTACAAAGCGAAACGCTGATGAGTTCTGAACAATATGAGAGTGATTG
CGAGCCGTTTGATCTGTAACGTTCTTAGAATGCTTGGAAAATTTTACCAA
CTATTTATTGATAtagaataatttttattttagtactcTTCTACTAAAGT
CAAATTAAATTGGAAATTGTAAaaactagccgtcccggcgtcgtccaAGA
CAAATCTTTACCATGATGattaagatatttttgagaaattaaatgtattt
tttaattttttacaattcggtaaaacccgttgtccgggggccaaaagtca
cttttccC
Run BLAST on NCBI

protein sequence of TCONS_00057815-protein

>TCONS_00057815-protein ID=TCONS_00057815-protein|Name=TCONS_00057815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
MMTTKHLLSILIILMTIHNAFPMMHPLNREYTIVKLITRCDGRNIMGNEI
SKQINKTIGHVFSFVYEFIEFDICDEKPEEGQFQLTRLLSSLLLEPRWRR
KIETNDTYYLSPKWDQITSSDEYRILGIVTYLSHTLLQRTIEILKFSKIM
IYPMTRQKESSEWFERQETVLPAMQREQSTESIIKTLLKKHSQWKNILII
ELITKKQPQPSLRIEMIQRRFQSRRNIRYWATPDFMKKKDTIFQKLKKES
SDQLVIVVGGAAGIFMALAQREHNITNRNWILFANLNRQSGLPDYVCFIG
VLGHLDVTTLPLYHNKTFCAQKRTWRLTQINKSRHKKQINLTCGMTTQKL
EKTIEIQMSQSIIHMRGVFQEKNSYQIEQLRNKTLSTVDRIDDINFGRPK
KRKMKFNINTTIEFCEHVEVRHINGSSDFVKQFDYTCLKCQNTSYLDKGS
CHMCVGGEIPNHNQTACYYPFEESNNDIIYHITTVFDTLGIILCLFILTV
FIKYRNTPVVRSSHFTLSMLQVICCLSLXSCVQATSPYPCSKLFAVLVFS
LSS
Run BLAST on NCBI

transcript from alignment at scaffold_298:255595..258452

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=transcript|length=2858bp|location=Sequence derived from alignment at scaffold_298:255595..258452 (Clytia hemisphaerica)
Gggaaaagtgacttttggcccccggacaacgggttttaccgaattgtaaa aaattaaaaaatacatttaatttctcaaaaatatcttaatCATCATGGTA AAGATTTGTCTtggacgacgccgggacggctagtttTTACAATTTCCAAT TTAATTTGACTTTAGTAGAAgagtactaaaataaaaattattctaTATCA ATAAATAGTTGGTAAAATTTTCCAAGCATTCTAAGAACGTTACAGATCAA ACGGCTCGCAATCACTCTCATATTGTTCAGAACTCATCAGCGTTTCGCTT TGTACGAAAGTCACACTCGTCATCCGGCTCATTTGCGTCACCTTGCGTCG TCTGGAGTCGCAATGTTTCGCCACATATTCCATTTGTTTATTAAAAGTTT TAACGAAAGATTTTGTGTtccttttcttttgaaagatgATTATATAAATT TTACTGGAGTATAAACAAAGTATTAAGGTGATGAGATTAATGGATAATGT TATACAAATGATGGGTACGAAATCGTTCTGCTTGATGGAGACTTTACTCA TGCTTCCGTATATAAGAAGAAAAAGTAGACAACAGGCTGAGGTTGCCGAT GATGCTATGATAGCATTCCCTTCGTTATAGGCATCCGGTAATCGACCATG TCCGCGCATTGCTTGTCCTAGTGATAGCATTAACAAGAATATACAATATG CGACCTGTAGATAGCTCTTCTCTCCGAGATCACACGCTAAGGTCAGATAT TTATTGCCGTACGCATCTGTTCGCTTAATGTTTACGATCGGTCGCGAGGG ATGCGGGAAACTGGATCCCATGATTGAAAGATCGATTACAACGATAAGGA TGAAAATCAAAGCTTGCTTTCGGAAGAGATCGCGTTTCGTTTTCCGACAA AGAACTGTCCTCATTGAGCAGATCGTGATTATCATTTCTGATTTGCAGAC TACGATTGCGTTAACAATGATCAGTAACAAACTGACGCCGTACTGACGTG ACGTACATCTGAAAACGTCAGGTTCTAACGAAACTGAACTCATGAAGATA ACGAAAAGACTAAGACAGCAAATAACTTGGAGCATGGATAGGGTGAAGTG GCTTGAACGCACGACTNAAGACTAAGACAGCAAATAACTTGGAGCATGGA TAGAGTGAAATGGCTTGAACGCACGACCGGTGTATTACGATATTTGATGA ATACTGTTAATATGAATAAACAGAGGATAATACCAAGCGTGTCAAAAACT GTTGTGATGTGATAAATAATGTCATTGTTGCTTTCTTCGAAGGGGTAATA ACATGCTGTTTGGTTGTGATTGGGTATTTCACCACCAACACACATATGGC AAGATCCTTTATCCAGATATGATGTATTTTGACATTTCAAACATGTATAG TCAAATTGTTTTACGAAATCTGATGAGCCATTTATATGACGTACTTCCAC ATGCTCGCAAAACTCTATAGTggtgtttatgttgaatttcattttacgtt ttttgggtCGTCCGAAATTAATATCATCAATTCGATCGACAGTACTGAGT GTTTTATTTCTTAACTGTTCAATTTGGTaactatttttttcttgaaaaac acCTCGCATGTGTATTATGCTCTGTGACATTTGAATTTCTATGGTTTTCT CTAATTTTTGGGTTGTCATCCCGCACGTTAAGTTTATTTGCTTTTTATGA CGACTTTTATTGATTTGGGTCAGCCTCCAAGTTCTTTTCTGAGCACAAAA TGTTTTATTGTGGTAGAGTGGTAACGTGGTTACGTCCAAATGCCCAAGAA CACCAATAAAACAGACATAGTCGGGAAGACCACTTTGTCTGTTTAGATTA GCAAAAAGAATCCAATTTCGGTTAGTAATGTTATGTTCCCTCTGTGCCAA AGCCATAAAGATACCCGCTGCCCCACCAACCACTATTACGAGTTGGTCGC TAGATTCTTTCTTCAGTTTTTGGAAGATGGTATCTTTCTTCTTCATAAAG TCTGGTGTCGCCCAATAACGTATGTTACGTCGTGATTGAAATCTACGTTG AATCATTTCGATACGTAGGGAAGGTTGTGGTTGTTTTTTAGTAATTAGCT CAATAATTAATATGTTTTTCCATTGTGAATGTTTtttaagtaatgttttt atGATGGATTCTGTACTCTGTTCTCTTTGCATTGCCGGTAGAACGGTTTC CTGTCTCTCGAACCACTCCGATGACTCTTTTTGTCTCGTCATTGGGTAga tcatgatttttgaaaatttcaaaatctcaaTCGTTCTCTGTAATAGCGTG TGACTTAAGTATGTTACAATGCCTAAAATGCGATATTCGTCTGAACTGGT AATTTGGTCCCACTTTGGTGATAAATAATACGTATCATTGGTTTCGATTT TGCGTCGCCATCTTGGTTCGAGAAGAAGAGATGATAAAAGTCTGGTCAAC TGAAATTGTCCTTCCTCTGGCTTTTCATCACAAATATCAAACTCAATAAA TTCGTAAACAAACGAAAAAACGTGTCCAATAGTCTTGTTaatctgttttg aaatttcgtTGCCCATTATATTTCGTCCGTCACATCTTGTGATGAGTTTA ACGATAGTGTATTCACGATTAAGAGGATGCATCATGGGAAATGCATTGTG GATGGTCATCAAAATAATCAGGatcgaaagtaaatgtttcGTTGTCatca tttctttaaaatttctttttcatttttagaaagctgaaaaaaagttaaga taCATACATAGGAAGATACATAAGGAGCGACTCACATATCAATTCTTTCC CATGACTAACGTCAAAATGTCGCTTACTACAAGACCACACCCCCGCACTC CCCCTCCA

Coding sequence (CDS) from alignment at scaffold_298:255595..258452

>TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_298:255595..258452 (Clytia hemisphaerica)
TCATGAAGATAACGAAAAGACTAAGACAGCAAATAACTTGGAGCATGGAT
AGGGTGAAGTGGCTTGAACGCACGACTNAAGACTAAGACAGCAAATAACT
TGGAGCATGGATAGAGTGAAATGGCTTGAACGCACGACCGGTGTATTACG
ATATTTGATGAATACTGTTAATATGAATAAACAGAGGATAATACCAAGCG
TGTCAAAAACTGTTGTGATGTGATAAATAATGTCATTGTTGCTTTCTTCG
AAGGGGTAATAACATGCTGTTTGGTTGTGATTGGGTATTTCACCACCAAC
ACACATATGGCAAGATCCTTTATCCAGATATGATGTATTTTGACATTTCA
AACATGTATAGTCAAATTGTTTTACGAAATCTGATGAGCCATTTATATGA
CGTACTTCCACATGCTCGCAAAACTCTATAGTggtgtttatgttgaattt
cattttacgttttttgggtCGTCCGAAATTAATATCATCAATTCGATCGA
CAGTACTGAGTGTTTTATTTCTTAACTGTTCAATTTGGTaactatttttt
tcttgaaaaacacCTCGCATGTGTATTATGCTCTGTGACATTTGAATTTC
TATGGTTTTCTCTAATTTTTGGGTTGTCATCCCGCACGTTAAGTTTATTT
GCTTTTTATGACGACTTTTATTGATTTGGGTCAGCCTCCAAGTTCTTTTC
TGAGCACAAAATGTTTTATTGTGGTAGAGTGGTAACGTGGTTACGTCCAA
ATGCCCAAGAACACCAATAAAACAGACATAGTCGGGAAGACCACTTTGTC
TGTTTAGATTAGCAAAAAGAATCCAATTTCGGTTAGTAATGTTATGTTCC
CTCTGTGCCAAAGCCATAAAGATACCCGCTGCCCCACCAACCACTATTAC
GAGTTGGTCGCTAGATTCTTTCTTCAGTTTTTGGAAGATGGTATCTTTCT
TCTTCATAAAGTCTGGTGTCGCCCAATAACGTATGTTACGTCGTGATTGA
AATCTACGTTGAATCATTTCGATACGTAGGGAAGGTTGTGGTTGTTTTTT
AGTAATTAGCTCAATAATTAATATGTTTTTCCATTGTGAATGTTTtttaa
gtaatgtttttatGATGGATTCTGTACTCTGTTCTCTTTGCATTGCCGGT
AGAACGGTTTCCTGTCTCTCGAACCACTCCGATGACTCTTTTTGTCTCGT
CATTGGGTAgatcatgatttttgaaaatttcaaaatctcaaTCGTTCTCT
GTAATAGCGTGTGACTTAAGTATGTTACAATGCCTAAAATGCGATATTCG
TCTGAACTGGTAATTTGGTCCCACTTTGGTGATAAATAATACGTATCATT
GGTTTCGATTTTGCGTCGCCATCTTGGTTCGAGAAGAAGAGATGATAAAA
GTCTGGTCAACTGAAATTGTCCTTCCTCTGGCTTTTCATCACAAATATCA
AACTCAATAAATTCGTAAACAAACGAAAAAACGTGTCCAATAGTCTTGTT
aatctgttttgaaatttcgtTGCCCATTATATTTCGTCCGTCACATCTTG
TGATGAGTTTAACGATAGTGTATTCACGATTAAGAGGATGCATCATGGGA
AATGCATTGTGGATGGTCATCAAAATAATCAGGatcgaaagtaaatgttt
cGTTGTCatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036445XLOC_036445Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057815-proteinTCONS_00057815-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057815-exon-scaffold_298-1491911889:255595..258452TCONS_00057815-exon-scaffold_298-1491911889:255595..258452Clytia hemisphaericaexon
TCONS_00057815-exon-scaffold_298-1510915933:255595..258452TCONS_00057815-exon-scaffold_298-1510915933:255595..258452Clytia hemisphaericaexon
TCONS_00057815-exon-scaffold_298-1575043694:255595..258452TCONS_00057815-exon-scaffold_298-1575043694:255595..258452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_298supercontigscaffold_298:255595..258452 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (10.9826 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0267858 0 0.0151641 0.0148357 0.126427 0.0713604 0.929808 1.25735 0.55301 1.80335 1.24833 0.677888 10.9826 8.56568 6.66191 5.31297 0.844535 3.67889 5.19648 7.47876 0.103592 0.0568446 0.107492 0.195452 2.09938 2.43831 2.88319 3.35141 3.07707 2.19604
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600180020002200240026002800Sequence
Match NameE-valueIdentityDescription
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