Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=transcript|length=2858bp TGGAGGGGGAGTGCGGGGGTGTGGTCTTGTAGTAAGCGACATTTTGACGT TAGTCATGGGAAAGAATTGATATGTGAGTCGCTCCTTATGTATCTTCCTA TGTATGtatcttaactttttttcagctttctaaaaatgaaaaagaaattt taaagaaatgatGACAACgaaacatttactttcgatCCTGATTATTTTGA TGACCATCCACAATGCATTTCCCATGATGCATCCTCTTAATCGTGAATAC ACTATCGTTAAACTCATCACAAGATGTGACGGACGAAATATAATGGGCAa cgaaatttcaaaacagattAACAAGACTATTGGACACGTTTTTTCGTTTG TTTACGAATTTATTGAGTTTGATATTTGTGATGAAAAGCCAGAGGAAGGA CAATTTCAGTTGACCAGACTTTTATCATCTCTTCTTCTCGAACCAAGATG GCGACGCAAAATCGAAACCAATGATACGTATTATTTATCACCAAAGTGGG ACCAAATTACCAGTTCAGACGAATATCGCATTTTAGGCATTGTAACATAC TTAAGTCACACGCTATTACAGAGAACGAttgagattttgaaattttcaaa aatcatgatcTACCCAATGACGAGACAAAAAGAGTCATCGGAGTGGTTCG AGAGACAGGAAACCGTTCTACCGGCAATGCAAAGAGAACAGAGTACAGAA TCCATCataaaaacattacttaaaAAACATTCACAATGGAAAAACATATT AATTATTGAGCTAATTACTAAAAAACAACCACAACCTTCCCTACGTATCG AAATGATTCAACGTAGATTTCAATCACGACGTAACATACGTTATTGGGCG ACACCAGACTTTATGAAGAAGAAAGATACCATCTTCCAAAAACTGAAGAA AGAATCTAGCGACCAACTCGTAATAGTGGTTGGTGGGGCAGCGGGTATCT TTATGGCTTTGGCACAGAGGGAACATAACATTACTAACCGAAATTGGATT CTTTTTGCTAATCTAAACAGACAAAGTGGTCTTCCCGACTATGTCTGTTT TATTGGTGTTCTTGGGCATTTGGACGTAACCACGTTACCACTCTACCACA ATAAAACATTTTGTGCTCAGAAAAGAACTTGGAGGCTGACCCAAATCAAT AAAAGTCGTCATAAAAAGCAAATAAACTTAACGTGCGGGATGACAACCCA AAAATTAGAGAAAACCATAGAAATTCAAATGTCACAGAGCATAATACACA TGCGAGgtgtttttcaagaaaaaaatagttACCAAATTGAACAGTTAAGA AATAAAACACTCAGTACTGTCGATCGAATTGATGATATTAATTTCGGACG acccaaaaaacgtaaaatgaaattcaacataaacaccACTATAGAGTTTT GCGAGCATGTGGAAGTACGTCATATAAATGGCTCATCAGATTTCGTAAAA CAATTTGACTATACATGTTTGAAATGTCAAAATACATCATATCTGGATAA AGGATCTTGCCATATGTGTGTTGGTGGTGAAATACCCAATCACAACCAAA CAGCATGTTATTACCCCTTCGAAGAAAGCAACAATGACATTATTTATCAC ATCACAACAGTTTTTGACACGCTTGGTATTATCCTCTGTTTATTCATATT AACAGTATTCATCAAATATCGTAATACACCGGTCGTGCGTTCAAGCCATT TCACTCTATCCATGCTCCAAGTTATTTGCTGTCTTAGTCTTNAGTCGTGC GTTCAAGCCACTTCACCCTATCCATGCTCCAAGTTATTTGCTGTCTTAGT CTTTTCGTTATCTTCATGAGTTCAGTTTCGTTAGAACCTGACGTTTTCAG ATGTACGTCACGTCAGTACGGCGTCAGTTTGTTACTGATCATTGTTAACG CAATCGTAGTCTGCAAATCAGAAATGATAATCACGATCTGCTCAATGAGG ACAGTTCTTTGTCGGAAAACGAAACGCGATCTCTTCCGAAAGCAAGCTTT GATTTTCATCCTTATCGTTGTAATCGATCTTTCAATCATGGGATCCAGTT TCCCGCATCCCTCGCGACCGATCGTAAACATTAAGCGAACAGATGCGTAC GGCAATAAATATCTGACCTTAGCGTGTGATCTCGGAGAGAAGAGCTATCT ACAGGTCGCATATTGTATATTCTTGTTAATGCTATCACTAGGACAAGCAA TGCGCGGACATGGTCGATTACCGGATGCCTATAACGAAGGGAATGCTATC ATAGCATCATCGGCAACCTCAGCCTGTTGTCTACTTTTTCTTCTTATATA CGGAAGCATGAGTAAAGTCTCCATCAAGCAGAACGATTTCGTACCCATCA TTTGTATAACATTATCCATTAATCTCATCACCTTAATACTTTGTTTATAC TCCAGTAAAATTTATATAATcatctttcaaaagaaaaggaACACAAAATC TTTCGTTAAAACTTTTAATAAACAAATGGAATATGTGGCGAAACATTGCG ACTCCAGACGACGCAAGGTGACGCAAATGAGCCGGATGACGAGTGTGACT TTCGTACAAAGCGAAACGCTGATGAGTTCTGAACAATATGAGAGTGATTG CGAGCCGTTTGATCTGTAACGTTCTTAGAATGCTTGGAAAATTTTACCAA CTATTTATTGATAtagaataatttttattttagtactcTTCTACTAAAGT CAAATTAAATTGGAAATTGTAAaaactagccgtcccggcgtcgtccaAGA CAAATCTTTACCATGATGattaagatatttttgagaaattaaatgtattt tttaattttttacaattcggtaaaacccgttgtccgggggccaaaagtca cttttccC Run BLAST on NCBI protein sequence of TCONS_00057815-protein >TCONS_00057815-protein ID=TCONS_00057815-protein|Name=TCONS_00057815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
MMTTKHLLSILIILMTIHNAFPMMHPLNREYTIVKLITRCDGRNIMGNEI SKQINKTIGHVFSFVYEFIEFDICDEKPEEGQFQLTRLLSSLLLEPRWRR KIETNDTYYLSPKWDQITSSDEYRILGIVTYLSHTLLQRTIEILKFSKIM IYPMTRQKESSEWFERQETVLPAMQREQSTESIIKTLLKKHSQWKNILII ELITKKQPQPSLRIEMIQRRFQSRRNIRYWATPDFMKKKDTIFQKLKKES SDQLVIVVGGAAGIFMALAQREHNITNRNWILFANLNRQSGLPDYVCFIG VLGHLDVTTLPLYHNKTFCAQKRTWRLTQINKSRHKKQINLTCGMTTQKL EKTIEIQMSQSIIHMRGVFQEKNSYQIEQLRNKTLSTVDRIDDINFGRPK KRKMKFNINTTIEFCEHVEVRHINGSSDFVKQFDYTCLKCQNTSYLDKGS CHMCVGGEIPNHNQTACYYPFEESNNDIIYHITTVFDTLGIILCLFILTV FIKYRNTPVVRSSHFTLSMLQVICCLSLXSCVQATSPYPCSKLFAVLVFS LSS Run BLAST on NCBI transcript from alignment at scaffold_298:255595..258452 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=transcript|length=2858bp|location=Sequence derived from alignment at scaffold_298:255595..258452 (Clytia hemisphaerica) Gggaaaagtgacttttggcccccggacaacgggttttaccgaattgtaaa
aaattaaaaaatacatttaatttctcaaaaatatcttaatCATCATGGTA
AAGATTTGTCTtggacgacgccgggacggctagtttTTACAATTTCCAAT
TTAATTTGACTTTAGTAGAAgagtactaaaataaaaattattctaTATCA
ATAAATAGTTGGTAAAATTTTCCAAGCATTCTAAGAACGTTACAGATCAA
ACGGCTCGCAATCACTCTCATATTGTTCAGAACTCATCAGCGTTTCGCTT
TGTACGAAAGTCACACTCGTCATCCGGCTCATTTGCGTCACCTTGCGTCG
TCTGGAGTCGCAATGTTTCGCCACATATTCCATTTGTTTATTAAAAGTTT
TAACGAAAGATTTTGTGTtccttttcttttgaaagatgATTATATAAATT
TTACTGGAGTATAAACAAAGTATTAAGGTGATGAGATTAATGGATAATGT
TATACAAATGATGGGTACGAAATCGTTCTGCTTGATGGAGACTTTACTCA
TGCTTCCGTATATAAGAAGAAAAAGTAGACAACAGGCTGAGGTTGCCGAT
GATGCTATGATAGCATTCCCTTCGTTATAGGCATCCGGTAATCGACCATG
TCCGCGCATTGCTTGTCCTAGTGATAGCATTAACAAGAATATACAATATG
CGACCTGTAGATAGCTCTTCTCTCCGAGATCACACGCTAAGGTCAGATAT
TTATTGCCGTACGCATCTGTTCGCTTAATGTTTACGATCGGTCGCGAGGG
ATGCGGGAAACTGGATCCCATGATTGAAAGATCGATTACAACGATAAGGA
TGAAAATCAAAGCTTGCTTTCGGAAGAGATCGCGTTTCGTTTTCCGACAA
AGAACTGTCCTCATTGAGCAGATCGTGATTATCATTTCTGATTTGCAGAC
TACGATTGCGTTAACAATGATCAGTAACAAACTGACGCCGTACTGACGTG
ACGTACATCTGAAAACGTCAGGTTCTAACGAAACTGAACTCATGAAGATA
ACGAAAAGACTAAGACAGCAAATAACTTGGAGCATGGATAGGGTGAAGTG
GCTTGAACGCACGACTNAAGACTAAGACAGCAAATAACTTGGAGCATGGA
TAGAGTGAAATGGCTTGAACGCACGACCGGTGTATTACGATATTTGATGA
ATACTGTTAATATGAATAAACAGAGGATAATACCAAGCGTGTCAAAAACT
GTTGTGATGTGATAAATAATGTCATTGTTGCTTTCTTCGAAGGGGTAATA
ACATGCTGTTTGGTTGTGATTGGGTATTTCACCACCAACACACATATGGC
AAGATCCTTTATCCAGATATGATGTATTTTGACATTTCAAACATGTATAG
TCAAATTGTTTTACGAAATCTGATGAGCCATTTATATGACGTACTTCCAC
ATGCTCGCAAAACTCTATAGTggtgtttatgttgaatttcattttacgtt
ttttgggtCGTCCGAAATTAATATCATCAATTCGATCGACAGTACTGAGT
GTTTTATTTCTTAACTGTTCAATTTGGTaactatttttttcttgaaaaac
acCTCGCATGTGTATTATGCTCTGTGACATTTGAATTTCTATGGTTTTCT
CTAATTTTTGGGTTGTCATCCCGCACGTTAAGTTTATTTGCTTTTTATGA
CGACTTTTATTGATTTGGGTCAGCCTCCAAGTTCTTTTCTGAGCACAAAA
TGTTTTATTGTGGTAGAGTGGTAACGTGGTTACGTCCAAATGCCCAAGAA
CACCAATAAAACAGACATAGTCGGGAAGACCACTTTGTCTGTTTAGATTA
GCAAAAAGAATCCAATTTCGGTTAGTAATGTTATGTTCCCTCTGTGCCAA
AGCCATAAAGATACCCGCTGCCCCACCAACCACTATTACGAGTTGGTCGC
TAGATTCTTTCTTCAGTTTTTGGAAGATGGTATCTTTCTTCTTCATAAAG
TCTGGTGTCGCCCAATAACGTATGTTACGTCGTGATTGAAATCTACGTTG
AATCATTTCGATACGTAGGGAAGGTTGTGGTTGTTTTTTAGTAATTAGCT
CAATAATTAATATGTTTTTCCATTGTGAATGTTTtttaagtaatgttttt
atGATGGATTCTGTACTCTGTTCTCTTTGCATTGCCGGTAGAACGGTTTC
CTGTCTCTCGAACCACTCCGATGACTCTTTTTGTCTCGTCATTGGGTAga
tcatgatttttgaaaatttcaaaatctcaaTCGTTCTCTGTAATAGCGTG
TGACTTAAGTATGTTACAATGCCTAAAATGCGATATTCGTCTGAACTGGT
AATTTGGTCCCACTTTGGTGATAAATAATACGTATCATTGGTTTCGATTT
TGCGTCGCCATCTTGGTTCGAGAAGAAGAGATGATAAAAGTCTGGTCAAC
TGAAATTGTCCTTCCTCTGGCTTTTCATCACAAATATCAAACTCAATAAA
TTCGTAAACAAACGAAAAAACGTGTCCAATAGTCTTGTTaatctgttttg
aaatttcgtTGCCCATTATATTTCGTCCGTCACATCTTGTGATGAGTTTA
ACGATAGTGTATTCACGATTAAGAGGATGCATCATGGGAAATGCATTGTG
GATGGTCATCAAAATAATCAGGatcgaaagtaaatgtttcGTTGTCatca
tttctttaaaatttctttttcatttttagaaagctgaaaaaaagttaaga
taCATACATAGGAAGATACATAAGGAGCGACTCACATATCAATTCTTTCC
CATGACTAACGTCAAAATGTCGCTTACTACAAGACCACACCCCCGCACTC
CCCCTCCA Coding sequence (CDS) from alignment at scaffold_298:255595..258452 >TCONS_00057815 ID=TCONS_00057815|Name=TCONS_00057815|organism=Clytia hemisphaerica|type=CDS|length=1662bp|location=Sequence derived from alignment at scaffold_298:255595..258452 (Clytia hemisphaerica) TCATGAAGATAACGAAAAGACTAAGACAGCAAATAACTTGGAGCATGGAT AGGGTGAAGTGGCTTGAACGCACGACTNAAGACTAAGACAGCAAATAACT TGGAGCATGGATAGAGTGAAATGGCTTGAACGCACGACCGGTGTATTACG ATATTTGATGAATACTGTTAATATGAATAAACAGAGGATAATACCAAGCG TGTCAAAAACTGTTGTGATGTGATAAATAATGTCATTGTTGCTTTCTTCG AAGGGGTAATAACATGCTGTTTGGTTGTGATTGGGTATTTCACCACCAAC ACACATATGGCAAGATCCTTTATCCAGATATGATGTATTTTGACATTTCA AACATGTATAGTCAAATTGTTTTACGAAATCTGATGAGCCATTTATATGA CGTACTTCCACATGCTCGCAAAACTCTATAGTggtgtttatgttgaattt cattttacgttttttgggtCGTCCGAAATTAATATCATCAATTCGATCGA CAGTACTGAGTGTTTTATTTCTTAACTGTTCAATTTGGTaactatttttt tcttgaaaaacacCTCGCATGTGTATTATGCTCTGTGACATTTGAATTTC TATGGTTTTCTCTAATTTTTGGGTTGTCATCCCGCACGTTAAGTTTATTT GCTTTTTATGACGACTTTTATTGATTTGGGTCAGCCTCCAAGTTCTTTTC TGAGCACAAAATGTTTTATTGTGGTAGAGTGGTAACGTGGTTACGTCCAA ATGCCCAAGAACACCAATAAAACAGACATAGTCGGGAAGACCACTTTGTC TGTTTAGATTAGCAAAAAGAATCCAATTTCGGTTAGTAATGTTATGTTCC CTCTGTGCCAAAGCCATAAAGATACCCGCTGCCCCACCAACCACTATTAC GAGTTGGTCGCTAGATTCTTTCTTCAGTTTTTGGAAGATGGTATCTTTCT TCTTCATAAAGTCTGGTGTCGCCCAATAACGTATGTTACGTCGTGATTGA AATCTACGTTGAATCATTTCGATACGTAGGGAAGGTTGTGGTTGTTTTTT AGTAATTAGCTCAATAATTAATATGTTTTTCCATTGTGAATGTTTtttaa gtaatgtttttatGATGGATTCTGTACTCTGTTCTCTTTGCATTGCCGGT AGAACGGTTTCCTGTCTCTCGAACCACTCCGATGACTCTTTTTGTCTCGT CATTGGGTAgatcatgatttttgaaaatttcaaaatctcaaTCGTTCTCT GTAATAGCGTGTGACTTAAGTATGTTACAATGCCTAAAATGCGATATTCG TCTGAACTGGTAATTTGGTCCCACTTTGGTGATAAATAATACGTATCATT GGTTTCGATTTTGCGTCGCCATCTTGGTTCGAGAAGAAGAGATGATAAAA GTCTGGTCAACTGAAATTGTCCTTCCTCTGGCTTTTCATCACAAATATCA AACTCAATAAATTCGTAAACAAACGAAAAAACGTGTCCAATAGTCTTGTT aatctgttttgaaatttcgtTGCCCATTATATTTCGTCCGTCACATCTTG TGATGAGTTTAACGATAGTGTATTCACGATTAAGAGGATGCATCATGGGA AATGCATTGTGGATGGTCATCAAAATAATCAGGatcgaaagtaaatgttt cGTTGTCatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00057815-exon-scaffold_298-1491911889:255595..258452 | TCONS_00057815-exon-scaffold_298-1491911889:255595..258452 | Clytia hemisphaerica | exon |
TCONS_00057815-exon-scaffold_298-1510915933:255595..258452 | TCONS_00057815-exon-scaffold_298-1510915933:255595..258452 | Clytia hemisphaerica | exon |
TCONS_00057815-exon-scaffold_298-1575043694:255595..258452 | TCONS_00057815-exon-scaffold_298-1575043694:255595..258452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_298 | supercontig | scaffold_298:255595..258452 . |
Blast
The following BLAST results are available for this feature:
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