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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057823 ID=TCONS_00057823|Name=TCONS_00057823|organism=Clytia hemisphaerica|type=transcript|length=1872bpRun BLAST on NCBI protein sequence of TCONS_00057823-protein >TCONS_00057823-protein ID=TCONS_00057823-protein|Name=TCONS_00057823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=624bp FRQNEKKVELERIMSLRLFTRKKWLLGVLFLIFMAIYTTIVLYIQDYLHHRun BLAST on NCBI transcript from alignment at scaffold_299:29022..41635+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057823 ID=TCONS_00057823|Name=TCONS_00057823|organism=Clytia hemisphaerica|type=transcript|length=12614bp|location=Sequence derived from alignment at scaffold_299:29022..41635+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_299:29022..41635+ >TCONS_00057823 ID=TCONS_00057823|Name=TCONS_00057823|organism=Clytia hemisphaerica|type=CDS|length=33696bp|location=Sequence derived from alignment at scaffold_299:29022..41635+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057823 vs. Swiss-Prot (Human)
Match: MGT5A (Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT5 PE=2 SV=1) HSP 1 Score: 348.977 bits (894), Expect = 3.045e-109 Identity = 209/556 (37.59%), Postives = 319/556 (57.37%), Query Frame = 1
Query: 256 KYDIKEKLNGTPKKKDCSFKRHQFFPMCQSKLDYLKYRWQ-ETCFREVHGVDGSQCSILEYFQKVEPYCGY--------HESKIRKDLPAKMRFDLQGLLKIISG-EQFQWMRQRATDSWPHWVQAGKFFQKKNQIYKRKK------IALFMGSFGFQPLLFKYAGKGGPLGELVQWTDTLCGLYILGYDVNVYLNITEMN-LPKTQPG--YCAPHWTDEMLRDEPEVIYTDSNGMAYFIMDLGAAATAKYRCRLRLLDSFGTWPEYNDPSYPFEIMGGRSPWANMNLLTQQFLTLYPHTDDNLFLGFVVGSKTMNELPTNKPTE--KQDKALLYAKLLSYCKSQENRKYLKIVSEYFQLEAT--SVKNENGFDFLHNYGPVSGSKVKELLAGAKVFIGCGFPYEGPGPLEAMAAGTPFIQPKYPVPKNKENDEFFKLKPNLRRLTSQSPYMEDFVGEPYVYTIDITNESLLRSVLQKIKNMKPLPPKIPKEFTNEGMMERLHIFTEHMDFCHASKPRWPPLSHREVFAAEKSTSCSETCRKHGLVCEKSYFDELN 1854
K ++ + +NG +K C +P C+ K+ ++K W+ + C+ + +GVDGS CS Y +VE +C + +E L A++R D L ++ E+F+WMR R W+QA K +K + KRK+ + L GF+ + + A GGPLGELVQW+D + LY+LG+D+ + ++ E+ + K G P D ++ E+IY D G+A F LG + Y+C LR+LDSFGT PE+N +Y + G ++PW NL QQF T++PHT DN FLGFVV + +N + E +Q+++L+Y K+ S+ K++ + YL I+ Y ++ AT +N ++ N+G +SG ++ LL K+F+G GFPYEGP PLEA+A G F+ PK+ PK+ +N +FF KP LR LTSQ PY E F+G P+V+T+D+ N+ + ++ I N K + P +P EFT EGM++R++ F E DFCH + WPPLS +V AE SC + C++ L+CE S+F LN
Sbjct: 131 KINVADIINGAQEK--CVLPPMDGYPHCEGKIKWMKDMWRSDPCYAD-YGVDGSTCSFFIYLSEVENWCPHLPWRAKNPYEEADHNSL-AEIRTDFNILYSMMKKHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKVLVHLGLLTKESGFK--IAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLAELKEIMKKVVGNRSGCPTVGDRIV----ELIYIDIVGLAQFKKTLGPSWV-HYQCMLRVLDSFGTEPEFNHANYA-QSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVV-EQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNK--KIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNQEEVEDAVKAILNQK-IEPYMPYEFTCEGMLQRINAFIEKQDFCHG-QVMWPPLSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLN 669 The following BLAST results are available for this feature:
BLAST of TCONS_00057823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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