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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057824 ID=TCONS_00057824|Name=TCONS_00057824|organism=Clytia hemisphaerica|type=transcript|length=1607bpRun BLAST on NCBI transcript from alignment at scaffold_299:29026..39413+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057824 ID=TCONS_00057824|Name=TCONS_00057824|organism=Clytia hemisphaerica|type=transcript|length=10388bp|location=Sequence derived from alignment at scaffold_299:29026..39413+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00057824 vs. Swiss-Prot (Human)
Match: MGT5A (Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT5 PE=2 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 4.061e-84 Identity = 177/491 (36.05%), Postives = 271/491 (55.19%), Query Frame = 3
Query: 252 KYDIKEKLNGTPKKKDCSFKRHQFFPMCQSKLDYLKYRWQ-ETCFREVHGVDGSQCSILEYFQKVEPYCGY-------------HES--KIRKDL-----------PFQWMRQRATDSWPHWVQAGKFFQKKNQIYKRKK------IALFMGSFGFQPLLFKYAGKGGPLGELVQWTDTLCGLYILGYDVNVYLNITEM-NLPKTQPG--YCAPHWTDEMLRDEPEVIYTDSNGMAYFIMDLGAAATAKYRCRLRLLDSFGTWPEYNDPSYPFEIMGGRSPWANMNLLTQQFLTLYPHTDDNLFLGFVVGSKTMNELPTNKPTE--KQDKALLYAKLLSYCKSQENRKYLKIVSEYFQLEAT--SVKNENGFDFLHNYGPVSGSKVKELLAGAKVFIGCGFPYEGPGPLEAMAAGTPFIQPKYPVPKNKENDEFFKLKPNLRRLTSQSPYMEDFVGEPYVYTIDITNESLLRSVLQKIKNMKPLPPKIPKE 1604
K ++ + +NG +K C +P C+ K+ ++K W+ + C+ + +GVDGS CS Y +VE +C + H S +IR D F+WMR R W+QA K +K + KRK+ + L GF+ + + A GGPLGELVQW+D + LY+LG+D+ + ++ E+ + K G P D ++ E+IY D G+A F LG + Y+C LR+LDSFGT PE+N +Y + G ++PW NL QQF T++PHT DN FLGFVV + +N + E +Q+++L+Y K+ S+ K++ + YL I+ Y ++ AT +N ++ N+G +SG ++ LL K+F+G GFPYEGP PLEA+A G F+ PK+ PK+ +N +FF KP LR LTSQ PY E F+G P+V+T+D+ N+ + ++ I N K + P +P E
Sbjct: 131 KINVADIINGAQEK--CVLPPMDGYPHCEGKIKWMKDMWRSDPCYAD-YGVDGSTCSFFIYLSEVENWCPHLPWRAKNPYEEADHNSLAEIRTDFNILYSMMKKHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKVLVHLGLLTKESGFK--IAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLAELKEIMKKVVGNRSGCPTVGDRIV----ELIYIDIVGLAQFKKTLGPSWV-HYQCMLRVLDSFGTEPEFNHANYA-QSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVV-EQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNK--KIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNQEEVEDAVKAILNQK-IEPYMPYE 606 The following BLAST results are available for this feature:
BLAST of TCONS_00057824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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