TCONS_00057825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057825
Unique NameTCONS_00057825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057825 ID=TCONS_00057825|Name=TCONS_00057825|organism=Clytia hemisphaerica|type=transcript|length=1814bp
gacaaaatgaaaaaaaagtagaaTTAGAAAGAATAATGTCACTTAGATTG
TTTACAAGAAAGAAATGGCTTTTGggtgttttgtttttaatcttCATGGC
AATCTACACAACGATTGTGTTGTATATCCAAGATTATCTTCATCATGAGA
ACCATAACAAGATTCCATTAATGCTCGAACACAAGAAAGATTCAGAATCT
GTCAGAAATGAAGAATTCGCATTACAAGAGTCTCTTCCACCTCCAACAAG
CAAGTATGATATCAAAGAAAAGTTGAACGGCACTCCCAAGAAAAAAGACT
GCTCCTTCAAGAGACATCAATTTTTCCCAATGTGCCAATCTAAACTTGAc
TATTTGAAATACCGATGGCAAGAAACATGTTTTCGAGAGGTTCATGGTGT
TGATGGTTCACAATGCTCAATACTTGAGTATTTTCAAAAGGTGGAGCCAT
ACTGTGGATACCATGAATCGAAAATAAGAAAAGATCTTCCGTTTCAATGG
ATGAGACAACGGGCCACAGATTCATGGCCTCACTGGGTTCAAGCTGGCaa
gttctttcaaaagaaaaaccaaaTATATAAAAGGAAAAAGATTGCGTTAT
TCATGGGCTCATTTGGTTTCCAACCTTTGCTTTTCAAATATGCTGGCAAG
GGTGGACCATTAGGTGAATTGGTACAGTGGACGGACACGTTGTGTGGATT
GTATATCCTTGGATATGACGTCAATGTTTATCTGAATATCACCGAGATGA
ACCTTCCAAAAACACAACCCGGTTATTGTGCACCGCATTGGACGGATGAA
ATGTTGCGTGACGAGCCGGAAGTTATTTATACCGATTCCAACGGAATGGC
GTATTTCATCATGGATCTGGGCGCTGCTGCCACTGCTAAGTATAGGTGTA
GATTGCGATTGTTAGATTCCTTTGGCACATGGCCAGAGTATAATGATCCC
AGCTATCCATTCGAAATAATGGGTGGTCGTTCTCCATGGGCCAACATGAA
TTTGCTGACTCAACAATTCCTAACATTGTATCCTCATACAGatgataatt
tatttttgggttttgtCGTCGGCAGCAAAACGATGAACGAACTTCCTACA
AATAAACCAACAGAAAAACAAGACAAAGCACTGCTTTATGCCAAGTTGCT
AAGTTACTGTAAAAGCCAGGAGAATCGAAAATACTTGAAAATTGTCAGTG
AATATTTTCAATTGGAAGCCACGTCAGTCAAGAATGAAAACGggtttgat
tttttacacaacTATGGACCAGTGAGTGGCAGTAAAGTTAAAGAGCTCTT
GGCCGGTGCAAAGGTTTTCATCGGATGTGGCTTCCCGTATGAAGGACCGG
GTCCTCTGGAAGCAATGGCTGCTGGAACACCTTTCATCCAACCCAAGTAT
CCAGTCCCtaagaataaagaaaatgacGAGTTTTTCAAACTGAAACCGAA
TTTAAGAAGGCTAACCTCGCAAAGCCCATACATGGAAGATTTCGTTGGTG
AGCCATATGTGTATACCATTGATATCACGAATGAATCGTTGTTGAGATCA
GTTCttcaaaagattaaaaatatgAAGcCATTACCACCAAAAATCCCCAA
AGAATTCACAAATGAAGGAATGATGGAACGACTTCACATTTTCACTGAGC
ACATGGACTTTTGTCATGCATCAAAACCGCGATGGCCACCACTAAGTCAT
CGAGAAGTTTTTGCGGcagaaaaatcaacttcttgttcAGAGACTTGCCG
AAAACATGGTCTAGTTTGCGAGAAGAGTTATTTCGACGAATTGAACGTTG
CTTCAGAAATTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_299:29026..41635+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057825 ID=TCONS_00057825|Name=TCONS_00057825|organism=Clytia hemisphaerica|type=transcript|length=12610bp|location=Sequence derived from alignment at scaffold_299:29026..41635+ (Clytia hemisphaerica)
gacaaaatgaaaaaaaagtagaaTTAGAAAGAATAATGTCACTTAGATTG TTTACAAGAAAGAAATGGCTTTTGggtgttttgtttttaatcttCATGGC AATCTACACAACGATTGTGTTGTATATCCAAGATTATCTTCATCATGAGA ACCATAACAAGATTCCATTAATGCTCGAACACAAGAAAGGTGAAATTTTT ATCTCTGCAATTAATTGACCACGGCTTTGCACCAGTTAACCGGTGCCAGG TGTCCCACATTTCACCGCCTTacaaaaatttctctttttttgattttcgt tttttaatcTCTGAGCAAAAgttgttcaaaatttttgttcaaGTTCTTTC TTATATGGTAcctcaaaatatattttaaaagatattaTATACACTTTCTC TAAAACGTTATCTCTTCCGATAAGGTTCGATACTTTCTTAGaaaatgatt tgaatttttgtgttttcttaaacaaacggtttatttcatccccattctaG ATTCAGAATCTGTCAGAAATGAAGAATTCGCATTACAAGAGTCTCTTCCA CCTCCAACAAGCAAGTATGATATCAAAGAAAAGTTGAACGGCACTCCCAA GAAAAAAGACTGCTCCTTCAAGAGACATCAATTTTTCCCAATGTGCCAAT CTAAACTTGAcgtaaataattttaaatcatttCTTTGCCAACCGGTCCAc acaaattacacgtttttttgagaatatacatcataagaatatttatgatt aaTTTGgccgaaaaataaaaatgtgctAAGAATGTCACCATCATGGTGAG GATATCATTTTCAGAgcattttaactgtaaattgccaaCCCCCCAGCAAG GCTCAATACTTTGACAAAAGTACCATTTTATTCTTCAGGTGTGTATCACA TGTTATCATTAGGTTGAATTTCGGGCTTCGCCGGAGAATGCCGTAGATTA TTTTAGGATAATATTATAGGTATTaatcataaaatgaaaaaaaaaaacta tttcataaaaaaaaacgtgtagagtgATTTTAGGTGAAAGGGAAACAGGG ACCAGACAAAACATTTAAATTACGGAGAGGtctttaaaattcttaaaatt tctaCCACGTTTGGCTTGAACTGAGTCTTTCGAGAATAATATACTCATAC TAAGTTGCGATATTTTCTTGATAAACATAATTAATTGATAGAGGACATCC TCGACTACTGTTCTGGAATGTAGCTTGATTTATTTTCCATTTGAAGTATT TGAAATACCGATGGCAAGAAACATGTTTTCGAGAGGTTCATGGTGTTGAT GGTTCACAATGCTCAATACTTGAGTATTTTCAAAAGGTTAGTGAAAACAC CCTGTTCTCGTTGGAATTTAGCCATGATAGTAAAGCCATGattctttatt ttatatactgatggtgAAATGAATAGCCTTGTTTGGGCtgtgagtttgaa tttcccatctCCAAATGTCAGTTGataaaagagccaatcaaagttttttt ctgagtgaaatatttttaactgttattttttgagtccaaaattttcctca cagctcgaacccgtcctgtctcatcaaaagtatttttatttcattattct GATTTTTACGATGCTGATTCTGTAAAgtaaaatgatgtttttgtttagGT GGAGCCATACTGTGGATACCATGAATCGAAAATAAGAAAAGATCTTCCGG TAAAGctattttttgttgatttataTCTTAAAAACCATTGAAATTACCTC CACGATTTTCACCGCTATCTGTAAACTTTTTtggatttaaaaaataaaat cactaATCCACTATTGTCATACAGAAAAAGAGTTCCACCTTTAGTTCTGG TATTTAGCATAGCAATTATCTGATTTTCAGTTATTCAGACCTCAGTGAAA ACCAATCCAGTAGGTCATAAAGGTCTTTAAATAATTTACAATCGATAAAA TCTAACGTGTATCTTTAGGCCAAGATGAGGTTTGATTTACAAGGCTTATT GAAAATCATATCCGGTGAACAGTTTCAATGGATGAGACAACGGGCCACAG ATTCATGGCCTCACTGGGTTCAAGCTGGCaagttctttcaaaagaaaaac caaaTATATAAAAGGAAAAAGGTACAGTAGGAAACTCACAAtgtaagaaa ttaaaaaaatgctaTCAAAGTATAAACAGTTCGAGGGGCCAAtcttttag gattatttataaAAGAGTGTACGTGAATTAGGCCCAGCTACAATCATGGG CAAAatgttgtagacaaatgaaatttcagtgaaaaatggtgagaaataga gcaaaatgactcttcaatgtgtctgaaaaagggggatgagctggagtttt tataagatacttcactaagtggtcatttgaagtaaaagagatgacgcgtt ctttagaaaaagtaacaaaattgttttactacatgttaacgaccaaccaa atcgaataagagcttgtaaaaactccagctNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACA CTttcgaagtcgttgcattgcttttgaattgcttttgagggaaccacaag caaaaaatcagcgttttgatactggtgtaagcctgTTAATCTAGCtcttg tggttagactgcagtgggtgactttgactttagaaagcacccagaacctc ttgggaacttgtttttgatcgatattgaagtattttgcaaatattgcaga agtctacaaaccttttgtccatgattgtaaacTGTAAGGGGAAACAAGTG CTgggtagcctatactagacgtcacgatATTTTTTCTTCGCTGTACCGTC TATAAACATGTTGCAGAATTAAAGTCTAAAGACAAAATCAttcttttact cgaaattttgttcttgttacatgacatttatttctgattggttcgaattt attgacactaataaagttatcagctctaagttgtaaagcaagtaacatga actttttcgagtaatcacatgttttgaatgcgctgatataattttgcaac ccatGTATTCCCTTTTGCGGCTTTTTCGAATTTTcggagcccaggttttc gggcatGAAATTCTGAGGAAAAAAGTAGACTACAAAATACCCTTTACACA TATGTACAAGGAAATACGGACATTTAAAGCAAAGGTCCTGTCCGATCCAA GTGCAATCTAAACAGATTTGACGCCAATCATTCTAAAACTGACAGGCATT TCAGCTTTTCATGACTGTTCGGAAGAATTCATCGTATTGACTCGAACAAT TTTATCTAGCTTTGTTCAATGATTTGAAAATCAATTCTATTGGAGAGAAA ATCTGGCCGGTGTACCGTTTGAAAAATACTAAAACGCTCGAACTCGTATA TCGCGGTTTGGTACATTGAAATCTTTCCCCTAAAATTTTCTAACTCTTCC CTTTTAGATTGCGTTATTCATGGGCTCATTTGGTTTCCAACCTTTGCTTT TCAAATATGCTGGCAAGGGTGGACCATTAGGTGAATTGGTACAGTGGACG GACACGTTGTGTGGATTGTATATCCTTGGATATGACGTCAATGTTTATCT GAATATCACCGAGATGAAGTATATATTTCCTTCATTTCATTTCGACGAGG AAAGTTTCATAGACGAAACAAATGAATTTATAGCCCCTAAATtgaatttt caaggaaaaacatttttataatgtcattacatgttttttaaaaGCAAGTG TCTATCCCTTCACCAGGcttgcattatgcttagcattctattgttcttaa acaatgAGTCATTGTATAGGAGCCAAAAACTGAACCTGTATAATGCTAAT AAACGTTtatgcttttgaaaaaaaaacatggttCATTACAAGGCGGAAAT GATTTGAAGTGAAATTTTTTAAGTGCCATACTATCAGAAGAAccgaagat ttttttctttcgagtTAAACTGAACCTTTATATTTCGAGTTGAACTGAAC CTTTATACTTCTCCATCTTGTAGGTGTGGCACAACTTTAGTGGTCGAGAG GGGGAGGGGCGTTAAAATCTGCACCATTATTGTAGAAAGATATAAAATGC CTATCATTTTTACTACTAAACAACCTAAGCAATTAATAGAAAACCATTGA AAAccctcattttggtattttCAGCCTTCCAAAAACACAACCCGGTTATT GTGCACCGCATTGGACGGATGAAATGTTGCGTGACGAGCCGGAAGTTATT TATACCGATTCCAACGGAATGGCGTATTTCATCATGGATCTGGGCGCTGC TGCCACTGCTAAGTATAGGTAAGCAAAAAGTGATGGTGAAACTTAATTTC GTCAATCAAGTCATGACTGTGCATTATAGAGATACCTTAAAGAAAGAATC GCCTTTTGCCGGAAAGCATCGCCTGAAATCCGCCAATTAAGTTCCCAGTA GATTTAATTTATTCCACACATTCTCCAAATTGGTGCTATTTCAGGCTTAT ATAGGTTTTCCTTATTTAACAGCTGTTTAAATAACAACTTTTAGCCAAAg atatcctgcaaccgccaaattaatttccctctgaaaaaacttttttcggc TATCATCTGCTGAATTAAATTTCCGCCAAAATGTCTTCCTTTTAAGGTAC AGACGTCTCCGTTCTTTTAATTCGtcaattttcagtttaaaaaccctcta tttttataaaatagagagctttagcttcaaaaaaaaaatgtttattcaCA ACCAAAAATTATCCTCGGGCACATAATATTGATATATTATGTtgaataaa atgaagaaaaatatatacactAGAAATCACTTAACTTCCCCTTTAATATC AAAGCAAAAATCTTCTTTGATCAATCTAAAATGGTCCTGGCAAGGACGCC AAGAAAATGTTGTTTGAAGAATCTTTCACCGTTTTCTTTTACAGGTGTAG ATTGCGATTGTTAGATTCCTTTGGCACATGGCCAGAGTATAATGATCCCA GCTATCCATTCGAAATAATGGGTGGTCGTTCTCCATGGGCCAACATGAAT TTGCTGACTCAACAATTCCTAACATTGTATCGTAAGTATAATAACCGATT CCATCATTGCTATTAAGAGGGGacgtttttattaatttctttaGGAAACT TTTGTTATGATATATAATGAAAGgaatatatttttaatgttgaaaaAACA TTCTGTGATTACGATCtgacaaaaagtttgaaactttGTGTGACTTTTTC CAATTCAATCAACCTATTATGCAGCTCCATTAAAGTAGATTGGGTTTTAG TTTACCGTTGTTGCCATATGTTATTAGAGTGTATATTTACAACAgaagtc attgtattgaccCCAATACTAAACCTTAGAGAACTCACAGCGATCGCACC ATTACAGATCAACAAACtgattttcttactttttcagCTCATACAGatga taatttatttttgggttttgtCGTCGGCAGCAAAACGATGAACGAACTTC CTACAAATAAACCAACAGAAAAACAAGACAAAGCACTGCTTTATGCCAAG TTGCTAAGTTACTGTAAAAGCCAGGTAGGCTATTTTCTTCAAGAATCTAA TGAAGGATAACCTGCTTTTAGTCTGCTAGAAGAAGATTGGCGGAAACTTC TTCTTTTAAACTCATTTTTAGACCTATTCGATGCTAGAATAGTACTGACC TGTGTGTTCTGAATCAAAAGACCCTCAAAACTTGCAGTAACATTGTTAGA TGGCTAACGTCTGGACTCTGAAATCTTGTGATGAAATTATTTGgccaccc agctggcacacaacgttgtttcaacgtttatttaacgtttccaacgtcca tataacgttagatgaacgttgaaacaacgttgtgtaccagcttgGCACCT TTCTCTTTGAATTGCCTTTATTTACAGGAGAATCGAAAATACTTGAAAAT TGTCAGTGAATATTTTCAATTGGAAGCCACGTCAGTCAAGAATGAAAACG TATGTTTTTTAAGACTCATTATCATTCACTTGTCATCATCGGTGTCATAT CCAAAAATGGTGCTTAAGGTGTACAAACTTtggcgagcagaaacttttgc aaggacgaaaaatcgcgaaatttgcgacatttactttcgcaaaaaattga ggaaaaaatgttttttgcgaacaaaaactttcacgaatcgttggataaaa atgagaatttttcaaTGAGAATTgccttaaagcttttttcacacgcaagt aaaattttactttagaccttagggaaaatcgttcgtaaggctgtcttttg ggaatttccccgacattatgtagagttttttttgattgagacatttactt tcgcgaaataGTCCAAAAGgctttctgctcgcgaaagtttgtacgcctaa gcTAAAGTATATTCGTTGAAATTAAAAACTACTTAACACTAATCCCAACC ACTGAACTTTCAAAACCCAGTATATTAAGCTATATTCGTCTCGTATCATC TTTGATCAGAGTGGTACACGCAAAGAAGCCATCGCACTAATAACGACAGC TAGCTATCAGTACTTAGAAATGCTAtactctttttttcatttttcatgct TTCAGGggtttgattttttacacaacTATGGACCAGTGAGTGGCAGTAAA GTTAAAGAGCTCTTGGCCGGTGCAAAGGTTGGTAACTATTGATTGCGAGT AAAAAAATGAAAGGGCTTCGCTTTTTCTACTATGATATATATAGCTGGTA ATATCGTTTAATATATAGAGCGCttggaaaaaaaagttgattatCTATTT TTTCCAACGCTATTTGTTTTGTTCCAACGTTGGAACAACACAATCGCCTC TCATTTTCCtttgctttttggacctaccccggtggggtagaggtcctata aattaaccgatgtccgtccgtctgtccgttcgtccgtccgtccgttcgtc cgtctgttaccagcttttctcaggattggctcattagttttttctgattt ttggcacaatgatgcaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNct tttccggtcgaaaatgccggaaatatgccggaaatcgtcgtttttgcaga ttttcatcggactttttccttatatttcgttgttttttcacacaaaacat tattaatagcaatgtccacgatcaagcatgattcaattgtcaataaaact gatattTGAAGCCGgagctttctaaaaatcgccggaacagccgattttcg ccggaaaaacggtatttcttgaatttcttgagctgtactttatatttttt catgaaattttgcacactgatgcaaaatgtcaatacctaaattgtgacga agccagagtttcgaaaaaaattcatttccggctgaaaatgccggaaatat gctggaaaaattggttttttggcattttctcgagattttatcattagttt tttctgattttttgctcaaagatgcgtattaacaatgcccaaaacatggc cgagtccgatttttgagaaaaaaaattttccggcggaaaatgcctgaaat atgccggaaatcgccgtctttctagattttcatcggactttttccttata attggttgttttttcattcaaaaacattattattagcaatgcccaccagc aagcatgtttcaattttcaataaaactgatttttggagccggaactattt taaaagtcgccggaacaacctattttcgccggaaagacagtatttcttga atttctcgagctgtactttatatttttttatgaaattttgcacNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNttttttatgaaattttacacactgacgcaatatgacaata tctaaaatgtgacggagcccgattttcgaaaaacatttttttccggccga aaataccggaaatatattttcttactttttcagCTCATACAGatgataat ttatttttgggtttcgtCGTCGGCAGCAAAACAATGAACGAACTCCCTAC AAATAAatatctaaaatgtgacggagcccgattttcgaaaaacatttttt tccggccgaaaataccggaaatatgccggaaaaaccggttttttgacatt ttctcgaatttttatttttagttttttctgattttttgcagaaagatgcg tattcgcaatgctcaaaaaatggccgagttcgatatttgagaaaaatttt ttccggtcgaaaattccggaaatcgccgtttttgcagattttcattgggt tttttccatatatttctatgtttttcacacaaaaacattattgataacaa catcaagcatgattcaattgtcaataaaactgatttttgcgaccagaact ttctatttattttttccctacaacccttccctctccccctaccatcaatc aatgatgaattttttttcctttttcttcttgcattgctatctaactttca tcatcaggtaggtccattcagcatctagcttttTATTCTTTGCGTAACAA TGTGAAAATCTATTGTAGGTTTTCATCGGATGTGGCTTCCCGTATGAAGG ACCGGGTCCTCTGGAAGCAATGGCTGCTGGAACACCTTTCATCCAACCCA AGGTACAATGACATTTAAAATCACGAAATCTACAAGAAAGTTTCGAGGAG GAAATACTCTTCGCGAGCgtaaattttttaacaaaacatTAAGTTAGATG CTAACTTTGTTCCCTGCGTATCATTAGCTTCTTAATTCTTATCGATAATA ATTCTCTAGCGTTAATCAGTAACGTAACTAtcatggggacgaggttggtt AGATGTGATGAAAATTAATTTACTTTCATGAAAAATTCTGTTCGTGAAAA TTTGTACGCTGCAAATTCATCTTTTCGAGTTCTCTTCGGTAAGAAATATT AACCCGCTCCCTCTATGACACCATCTCATTTGCTTGATTTTTTAGTATCC AGTCCCtaagaataaagaaaatgacGAGTTTTTCAAACTGAAACCGAATT TAAGAAGGGTAAGTTTGTTTTAttctcatttcaatttttttgataaactt cATGGGCGCGATTGAGGTGGTCCAGACGTATCATACTAGCCATCTTTGTT TGCTTTACTTAAGCAAATTCCCAAATTGGGCTAATccagaaaaacatttt aatatgggagtggaggatataatttttggaaatctaCCCCTCCCTGAACA cggtgacttttgacccccttTCCCGGACAGCTGGTCTAACCCCCTCCCCC AAACAAGCATCGGTTCACCCCAGGAGAGTTAGAATTACCCCAAAACAAAG CAAGTTTACAAggcaaattttttagatttttcactacccacAGAGaatat atcctccatccccgTGTATGAACATTTCTCGGAACGATTTTTATCATTAC CAGCTAACCTCGCAAAGCCCATACATGGAAGATTTCGTTGGTGAGCCATA TGTGTATACCATTGATATCACGAATGAATCGTTGTTGAGATCAGTTCttc aaaagattaaaaatatgAAGGTAACAATTTTTAATACTCGAAGATGGCCA TTATCTACAAGTTACGTTacgtaaaagatttttttactttctagttttgt tgattttatagCAACTTTTGAGAGACATTTCGCGTTTTTGGTTTGGACCA CATTTCAAATAGACTGATTGTCAGTGAAATAAAAATCTGGTAAATCTTTC TATGCCCAACGTTGGCCCTTTTTTCCATGAATATAGTATGTGGATAAATA ATTGCCAGCTTTACTCGATAACACTCCAGTATAAAGGACTTTCGATACCC AGGCTCCTACAGTTTAAGCCTGTTTAAGtttaattttggatttttatatt ttttgcagCCATTACCACCTAAAATCCCCAAAGAATTNctgaattttgga tttttattttttttgtagcCATTACCACCAAAAATCCCCAAAGAATTCAC AAATGAAGGAATGATGGAACGACTTCACATTTTCACTGAGCACATGGTAT GTTAAAGTAGTTAGCTCTGAATAGGTACTAGGGTTTAAAGTTTGACGACA CTGCAAAAATATTGCGAAAGTTTCAGGATTCCAGAGGGTGTCGAAAATTA TACTCGAGTTTTTGGTATCTgctctcaacttcagttgagctagaatctga catgTCTGTGTAGAattcggctgaaattttgcacatttgttccttgggtg aatatcagggggtgtttttttcattttttcgaaattttcattttaaggtC ACAATTGTGAGGTTTAGCCCAAAACGAAGCTAAAACAtttcttatataaa agattttctgttgATGCTTACAATTTGGCCTACGAGTAAtttaaaagata ctgaagttgagccagtgcggttaccACGTTCGACAGTTTTCAAGCATTGG GTCTGTTTCGATCCAACTTTACCAAATATACTTCCTTCCCGGCACAATCC AAGCCATTTTTTCCTCCTTTCTGCGTAAGACACATCAAGAAACATCCTTC ATGCAGGAGTATTTTCACGGTTCTTAATACATGgtgtcaccccccccccc ccttaaagggggggggggggggcccccagTTACTAAAACCGGGAAAAAAA CCCCCCAAGCCGGGGGATTTTTCGCGGTTCTTAAAtttagtgcccccccc ccccccccactttaagtgggggtacctaaaaaaaaaggtgttaaaaaagc caggtacctggaagtattcacactttcagggggtacctgatatgtttggg gggACCTGTAATCTCGTCAGTGAGGGTGGGGGCTGTTTTTTCTGTGTGGG atatttttcttaactttactcaatttctcaattttcaacCAAACCCTTCG TTTTTactactttttctttctttgagtCCTTTACATTTTACAGTAACCCC AGTGAAGGAGATTaaaattaaacgatttttttgtttttgtttttttttat aaatagaaatttGTAGTTTGCCCACGGACGTGGAGTGGTTcaatttgaat aaataaataaataaataaataacgaTATTGCATTTTTGCTGACCAAGCGT TTCTATCATAACAAACATGGTAGCTTGAAGTTGTTATATTTTTTNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAAATCCTGGGGGCTAC CTAAGAATCCAAACAactttgggggtacctaaatcgTTGGGGGTACCTAA TTTTATTGGGGGTACCTGAAGCCTGGAGGACCCTATGTACCaatgaaata tatattttctcaaCAGGACTTTTGTCATGCATCAAAACCGCGATGGCCAC CACTAAGTCATCGAGAAGTTTTTGCGGcagaaaaatcaacttcttgttcA GAGACTTGCCGAAAACATGGTATGAAATACATTATCACAATTATTTGTTG ACCTTAATTAATATTTCATTTGGGTTCTAATTTTCTATAAACATTCAACT CTTTttaatttgctttttttttagatttttaaggGATTTTTGAAGATTGG AGTTGGAGATCTTTTGTCAATTTGGAATGTTCtaccaatttttgaaatat ttagagGCAGTTTTCGAGGAaatctattttcattttatcctcTTTCTCCT TCAGGTCTAGTTTGCGAGAAGAGTTATTTCGACGAATTGAACGTTGCTTC AGAAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036452XLOC_036452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057825-exon-scaffold_299-1491911889:29026..29214TCONS_00057825-exon-scaffold_299-1491911889:29026..29214Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:29026..29214TCONS_00057825-exon-scaffold_299-1510915933:29026..29214Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:29026..29214TCONS_00057825-exon-scaffold_299-1575043694:29026..29214Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:29526..29686TCONS_00057825-exon-scaffold_299-1491911889:29526..29686Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:29526..29686TCONS_00057825-exon-scaffold_299-1510915933:29526..29686Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:29526..29686TCONS_00057825-exon-scaffold_299-1575043694:29526..29686Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:30272..30361TCONS_00057825-exon-scaffold_299-1491911889:30272..30361Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:30272..30361TCONS_00057825-exon-scaffold_299-1510915933:30272..30361Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:30272..30361TCONS_00057825-exon-scaffold_299-1575043694:30272..30361Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:30674..30724TCONS_00057825-exon-scaffold_299-1491911889:30674..30724Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:30674..30724TCONS_00057825-exon-scaffold_299-1510915933:30674..30724Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:30674..30724TCONS_00057825-exon-scaffold_299-1575043694:30674..30724Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:31048..31146TCONS_00057825-exon-scaffold_299-1491911889:31048..31146Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:31048..31146TCONS_00057825-exon-scaffold_299-1510915933:31048..31146Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:31048..31146TCONS_00057825-exon-scaffold_299-1575043694:31048..31146Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:32583..32743TCONS_00057825-exon-scaffold_299-1491911889:32583..32743Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:32583..32743TCONS_00057825-exon-scaffold_299-1510915933:32583..32743Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:32583..32743TCONS_00057825-exon-scaffold_299-1575043694:32583..32743Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:33300..33443TCONS_00057825-exon-scaffold_299-1491911889:33300..33443Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:33300..33443TCONS_00057825-exon-scaffold_299-1510915933:33300..33443Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:33300..33443TCONS_00057825-exon-scaffold_299-1575043694:33300..33443Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:34070..34206TCONS_00057825-exon-scaffold_299-1491911889:34070..34206Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:34070..34206TCONS_00057825-exon-scaffold_299-1510915933:34070..34206Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:34070..34206TCONS_00057825-exon-scaffold_299-1575043694:34070..34206Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:34563..34699TCONS_00057825-exon-scaffold_299-1491911889:34563..34699Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:34563..34699TCONS_00057825-exon-scaffold_299-1510915933:34563..34699Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:34563..34699TCONS_00057825-exon-scaffold_299-1575043694:34563..34699Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:35053..35124TCONS_00057825-exon-scaffold_299-1491911889:35053..35124Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:35053..35124TCONS_00057825-exon-scaffold_299-1510915933:35053..35124Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:35053..35124TCONS_00057825-exon-scaffold_299-1575043694:35053..35124Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:35731..35802TCONS_00057825-exon-scaffold_299-1491911889:35731..35802Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:35731..35802TCONS_00057825-exon-scaffold_299-1510915933:35731..35802Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:35731..35802TCONS_00057825-exon-scaffold_299-1575043694:35731..35802Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:38044..38127TCONS_00057825-exon-scaffold_299-1491911889:38044..38127Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:38044..38127TCONS_00057825-exon-scaffold_299-1510915933:38044..38127Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:38044..38127TCONS_00057825-exon-scaffold_299-1575043694:38044..38127Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:38471..38533TCONS_00057825-exon-scaffold_299-1491911889:38471..38533Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:38471..38533TCONS_00057825-exon-scaffold_299-1510915933:38471..38533Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:38471..38533TCONS_00057825-exon-scaffold_299-1575043694:38471..38533Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:38929..39045TCONS_00057825-exon-scaffold_299-1491911889:38929..39045Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:38929..39045TCONS_00057825-exon-scaffold_299-1510915933:38929..39045Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:38929..39045TCONS_00057825-exon-scaffold_299-1575043694:38929..39045Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:39444..39521TCONS_00057825-exon-scaffold_299-1491911889:39444..39521Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:39444..39521TCONS_00057825-exon-scaffold_299-1510915933:39444..39521Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:39444..39521TCONS_00057825-exon-scaffold_299-1575043694:39444..39521Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:41242..41344TCONS_00057825-exon-scaffold_299-1491911889:41242..41344Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:41242..41344TCONS_00057825-exon-scaffold_299-1510915933:41242..41344Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:41242..41344TCONS_00057825-exon-scaffold_299-1575043694:41242..41344Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1491911889:41580..41635TCONS_00057825-exon-scaffold_299-1491911889:41580..41635Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1510915933:41580..41635TCONS_00057825-exon-scaffold_299-1510915933:41580..41635Clytia hemisphaericaexon
TCONS_00057825-exon-scaffold_299-1575043694:41580..41635TCONS_00057825-exon-scaffold_299-1575043694:41580..41635Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:29026..41635 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.315902 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.37573 0 0 0 6.48968e-10 0.0339067 0 8.60049e-06 0 4.16779e-06 0 0.445043
Blast
BLAST of TCONS_00057825 vs. Swiss-Prot (Human)
Match: MGT5A (Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT5 PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 5.628e-107
Identity = 207/555 (37.30%), Postives = 312/555 (56.22%), Query Frame = 3
Query:  252 KYDIKEKLNGTPKKKDCSFKRHQFFPMCQSKLDYLKYRWQ-ETCFREVHGVDGSQCSILEYFQKVEPYCGY-------------HES--KIRKDL-----------PFQWMRQRATDSWPHWVQAGKFFQKKNQIYKRKK------IALFMGSFGFQPLLFKYAGKGGPLGELVQWTDTLCGLYILGYDVNVYLNITEMN-LPKTQPG--YCAPHWTDEMLRDEPEVIYTDSNGMAYFIMDLGAAATAKYRCRLRLLDSFGTWPEYNDPSYPFEIMGGRSPWANMNLLTQQFLTLYPHTDDNLFLGFVVGSKTMNELPTNKPTE--KQDKALLYAKLLSYCKSQENRKYLKIVSEYFQLEAT--SVKNENGFDFLHNYGPVSGSKVKELLAGAKVFIGCGFPYEGPGPLEAMAAGTPFIQPKYPVPKNKENDEFFKLKPNLRRLTSQSPYMEDFVGEPYVYTIDITNESLLRSVLQKIKNMKPLPPKIPKEFTNEGMMERLHIFTEHMDFCHASKPRWPPLSHREVFAAEKSTSCSETCRKHGLVCEKSYFDELN 1796
            K ++ + +NG  +K  C       +P C+ K+ ++K  W+ + C+ + +GVDGS CS   Y  +VE +C +             H S  +IR D             F+WMR R       W+QA K   +K  + KRK+      + L     GF+  + + A  GGPLGELVQW+D +  LY+LG+D+ +  ++ E+  + K   G     P   D ++    E+IY D  G+A F   LG +    Y+C LR+LDSFGT PE+N  +Y  +  G ++PW   NL  QQF T++PHT DN FLGFVV  + +N    +   E  +Q+++L+Y K+ S+ K++  + YL I+  Y ++ AT      +N   ++ N+G +SG  ++ LL   K+F+G GFPYEGP PLEA+A G  F+ PK+  PK+ +N +FF  KP LR LTSQ PY E F+G P+V+T+D+ N+  +   ++ I N K + P +P EFT EGM++R++ F E  DFCH  +  WPPLS  +V  AE   SC + C++  L+CE S+F  LN
Sbjct:  131 KINVADIINGAQEK--CVLPPMDGYPHCEGKIKWMKDMWRSDPCYAD-YGVDGSTCSFFIYLSEVENWCPHLPWRAKNPYEEADHNSLAEIRTDFNILYSMMKKHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKVLVHLGLLTKESGFK--IAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLAELKEIMKKVVGNRSGCPTVGDRIV----ELIYIDIVGLAQFKKTLGPSWV-HYQCMLRVLDSFGTEPEFNHANYA-QSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVV-EQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNK--KIYLDIIHTYMEVHATVYGSSTKNIPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNQEEVEDAVKAILNQK-IEPYMPYEFTCEGMLQRINAFIEKQDFCHG-QVMWPPLSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLN 669          
The following BLAST results are available for this feature:
BLAST of TCONS_00057825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MGT5A5.628e-10737.30Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylgluc... [more]
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