TCONS_00057831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057831
Unique NameTCONS_00057831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057831 ID=TCONS_00057831|Name=TCONS_00057831|organism=Clytia hemisphaerica|type=transcript|length=1501bp
ctatttgactttgaaattaCCACTTAGTTAATGAACGATTGACATTGCTA
AACTATTAATTGTGTTTAGAGGGTAAAGTGTCACACCCTAATAAAGCATT
GTGATTTTAACAAAGAACAACCCTGGGTCTTCATCTTTTGAAATGTATAA
AAGGGAAAGAATCGAGGCATTTAGTATCAGTTCAAAGCAGAAGCTGAAAC
GGTTGAAGATTTAATTTCATACAAAGGAACGAAAAAGaaaaagcaacaaa
atgaAGATTGCTGTGTTGTTAGTTTTGGCCATTGCTGTTGTATGCGAGGG
ACAGGAAGGGGATTTATTGATTTATGGATGCCCAAGTGGATATTCTTTAA
AAGGGACGTATTCTGGCTCGACCACAGCTGTTGTATATACAGCTGCCGTG
AAATCTACTTGTTGTCCAGATAGTGCATCAGACTTTCATGATCTGGGAAG
CGGAAGAATCTTTTGTTGCCCCAGTGGATCAGGTGCTTATTGTTTAGGTA
CTCAATGTAATTGCAAAAATGGTGGAGCAATAAGAGCTGGCAAACAACCT
CAAGCCAAACGTGTCCCCTCCGCTCGTAAAGATACAATGGAGAGGGAGTT
GAGAATCGAGAAAATTGAGAAGGCATTATCCCTCTAAACTTCCTTTTAGA
ACTTTGAACTTTCAAAATATGATAACTACGAAACAGTTATTAAAGAAACA
TACCGTATAAAATCTAATTGAATATGACCAGGCACTTTACATAATCTAAG
CACAGGAAAAGCTTCTTTATGTGTACTTTCCATATATGGGATATGAaact
atttaattttttttttaattaatactTTTGTAAACAACTTAATGTGAATG
TGTACGTTATGGGGCGAGAGGCTGACTTGAAAATACTGACTTACAAAAAC
TATTGTTTACGGAAACTGTGGACTAACGTGGTCccctgaaaacagctgaa
atATCTCGTCTTATAACATTACTTCATTTACTGTAATACTGATACTgaat
aattttcatattttgcatTTATAAACAATTTACTCATGTTTTCATTCACC
TTCGTCCCATGTGTTATCGATGCGATTACATCGATTTTCTTATGAGAATT
ATTCAAACTATTCGAAGCTTTTTAGTTTGTTCAGTGAAAATTCTAACAAA
AAGTAGTTATCTATACACGCGGTCGTCTACTGTGAACGGGAGTCTTTTTT
CAGGCTTTTTGAAACCAAGTTTAACTCTCAAGTTCATTCAATATGTATAT
ATAAACTAGCTGCTATCGCAACGTCACTGGCTGcgattagtttttttaaa
tctgaaggGCACTCTTCGGACTTGAATGGGGTCGCATGCACATCAAATGT
CTTTTGCTAGTCACATTTAAGTAGCATCAAAATTCTAGATGTAGCATGGC
GGCCTAATAGATATTGAAAAGCTGAGTTTTGCCTtagtttaaaatcttaa
ataaccTGTGCCCTTTGCTCTTGCACAGAGTTGCGCGTACCGTGGCTGAT
T
Run BLAST on NCBI

transcript from alignment at scaffold_299:85094..89781-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057831 ID=TCONS_00057831|Name=TCONS_00057831|organism=Clytia hemisphaerica|type=transcript|length=4688bp|location=Sequence derived from alignment at scaffold_299:85094..89781- (Clytia hemisphaerica)
CTATTTGACTTTGAAATTACCACTTAGTTAATGAACGATTGACATTGCTA
AACTATTAATTGTGTTTAGAGGGTAAAGTGTCACACCCTAATAAAGCATT
GTGATTTTAACAAAGAACAACCCTGGGTCTTCATCTTTTGAAATGTATAA
AAGGGAAAGAATCGAGGCATTTAGTATCAGTTCAAAGCAGAAGCTGAAAC
GGTTGAAGATTTAATTTCATACAAAGGAACGAAAAAGGTAGAATACATTA
TTTATTTATGTTATACGAAATAATTTTATCATGCGTTAATAAAAGGTTTT
AACTACACATTCACAATTCGTATAGCATATCTTTAAGGTATGTGTAAGGG
CTGCGGGAAGGGCTGTAAGGGCTGGAGAACAGTTTCCATGCTTATTCAAA
AGCTAACTGGGGAGCTCCGAAATAGTCCAGCCTTGATAGGGCTAATGCAA
TGAATGCAATTTTATATTTTAGAAAAAGCAACAAAATGAAGATTGCTGTG
TTGTTAGTTTTGGCCATTGCTGTTGTATGCGAGGGACAGGAAGGGGATTT
ATTGATTTATGGAGTAAGTAAAACAAGCTTTATAATTTTTGAAAAGTAAT
GAAATGAATGAAATTAAATTCTTACTTTAACCCTATTTCAATAAGAGGGG
GGGGGGGGGGGGAGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGAGGG
GGGGGGGGGGGGGAGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGCC
CATTCCCCCCCCCCCCCCCTACCAAATTTTTGTTTATAACTTTTTATTGG
CAGGGCCCTGAAACGTTTTGAGTTTTCCTAAAATTTATTTTTTGGAAAAT
TTCTAAAAAAAAATTTTGTGACGTGACTAGTCCTCGTGCTATTGTCAATC
CATCAGCAGGTGGTATGACACAAATTTTGACAATAAAATTTCTTACATAC
ATCAATCGAAAGATAATTTGATTGTGATTTCAAATATATAATTATTTTTC
CTGTCACGTGACATGTTCCCTTGTTATTGAGAAAATACTATNATCGAAAG
ATAATTTGATTGTGATTTCAAATATATAATTATTTTTCCTGTCACGTGAC
ATGTCCCCTTGTTATTGAGAAAATACTATTGATGTCAAGAGATGCAGAAT
ATGATAAGGTGCCATCATAACTAATTTTGATATAATAGCATTTACCAATA
AAAAGTTATGATGGGGGGGGGGCGAATCGACCCCCTAGTTTTGAGGAGCC
CCAAAAAGCCTAGTTGAAATAGGGTTAAAGTTAAAGCAGTTAAGTTCAGC
TATGAAAAATCCAATTCAATACGTTTAAAGCAATGCAAAATATGTTTGTC
ATACACCTTAAGTAATTCAAAGGTTTTTTAATCTTTTACATGGGTCTAAG
ATTGACATTCTGCCATAGATACTAAAATTTATTAGAACCTAGATATCACG
TGATAAGTGGTGTTATCGGCGATCCAAAAAATGTCTGCAATCTGATTGGT
TAAAAAGAGTCCAATATATCTTGTATTTTACATGTAAAAATATAAATTGA
CGAAAAGATGTTGTTGCATTGTAGCGGTAGCAGCAATCTAACGTCACTTT
GCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTTTGGGTCACCGATAAACCAGTTATCAGA
CCTTCGCTCGTACAATATGGAAATATTTTACTCGTTCCAGATTTTCCGTA
TATTTTCCTCGCCTAAATGCTCGGAAAATATTGTACGGAAAAATCTCGGA
ACTCGTAAAATATTTCTCATATTGTACTCGCAACTGTCCGATAACTATTA
CTTATTCCTGCAGGGAACAAAGCAATTCAAAAACTCAATTTGACCGTTCA
AAAAAGAATTTCTGAATTTGTTGTTACATTTTCATTATTTAGTGCCCAAG
TGGATATTCTTTAAAAGGGACGTATTCTGGCTCGACCACAGCTGTTGTAT
ATACAGCTGCCGTGAAATCTACTTGTTGTCCAGATAGTGCATCAGGTGAG
AGCATTTTTTTTTTCAACGGAAAAGGGGGAAGCGTTGCGCTATGATAGCT
ATCCGATATGAAACTCACAACGATAAATTCATTTGCAAGTGTGAACAGGA
GCCCTACTTGATGTATTTTTTGTTTCGTTAAGACATCCAGTATAATGTGA
ACATAGTTTTAGATTTGTGTACGGGACGAAAATGAACTTGAAAATATTGA
CGGGTGGGGCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGGGGGGGGTGTTACTATCTTTCTACAAAAATCAAGATTTATAAGAT
GATTTGTTTATGAACCTTATATTATTTGGTTGGGAATCGTCACGTTACTA
TTTTATTCCTTTGATTGAATTTAAGTACAAAATCATCTCTCATAAAAATC
TGATATCATTAACTGACCTCCTGAAAAGCTTGCCATAACGAACTTTACAC
GTTCAAATCGATTATCTGTTTTAATGAGAAACATGTGTTAATTTGTTTTA
AGGGTGTGACAAGCATGTGCGAGTAAGGAAAAATAGACATATCTTAGCAA
TCAAACCTATAGAATTATAAAATTAAATGGTGTATTAAATTAAATATTAA
AATATTTTTACTTTTAAAATAATTCTGCTGCTACATTAGTATCCTTTCAT
TCATACTACTAATCCTTTTCATAGACTTTCATGATCTGGGAAGCGGAAGA
ATCTTTTGTTGCCCCAGTGGATCAGGTGCTTATTGTTTAGGTAAGTATGC
TATAAATATATTCTCCATGTATATGTTTTATCCTTGACTCTGTTTACCTG
GGCTTCTTTATGTACGTTAAATACAACTTTTATACTTCATACAATTATAT
TATAACCTCATCACAGAAAGGTTCATTTTCTAATTGCTGCCATCACTATT
TAGCAAAACTACGCGTCTTATTTTTAAAGTCTTATCTAGCTTTTAAAACC
ATTGCCGTATATAAAGTTTTAAAGGAAATAGTTTGCACGTTACAAAATTT
GACAATTGTTTGCAAAATCAGATAATATTTCTACTGACATCAACACTTTA
TAAGCACCTTTTAGCCAAAATCTCATAAATGATACCTGACATTATGACGC
TAGATAGGGACTGAATTTCCAAATGTATTTCTCTTCTCTTTTCAACCACT
GGTATAAACTGATTCCATCGTTGAAATATCCTTGACCTGTTATTTATAGA
ATAATAAATTTGATTGTAAATTGATCATACATGATCTGGAAACCATATCA
AGTGAGGGAATGTAACATCATGTGATACGATATTAACGAAATGTTATTTA
AATCATTGCCTTTAACTTGTTTTGTTCTTTATAGGTACTCAATGTAATTG
CAAAAATGGTGGAGCAATAAGAGCTGGCAAACAACCTCAAGCCAAACGTG
TCCCCTCCGCTCGTAAAGATACAATGGAGAGGGAGTTGAGAATCGAGAAA
ATTGAGAAGGCATTATCCCTCTAAACTTCCTTTTAGAACTTTGAACTTTC
AAAATATGATAACTACGAAACAGTTATTAAAGAAACATACCGTATAAAAT
CTAATTGAATATGACCAGGCACTTTACATAATCTAAGCACAGGAAAAGCT
TCTTTATGTGTACTTTCCATATATGGGATATGAAACTATTTAATTTTTTT
TTTAATTAATACTTTTGTAAACAACTTAATGTGAATGTGTACGTTATGGG
GCGAGAGGCTGACTTGAAAATACTGACTTACAAAAACTATTGTTTACGGA
AACTGTGGACTAACGTGGTCCCCTGAAAACAGCTGAAATATCTCGTCTTA
TAACATTACTTCATTTACTGTAATACTGATACTGAATAATTTTCATATTT
TGCATTTATAAACAATTTACTCATGTTTTCATTCACCTTCGTCCCATGTG
TTATCGATGCGATTACATCGATTTTCTTATGAGAATTATTCAAACTATTC
GAAGCTTTTTAGTTTGTTCAGTGAAAATTCTAACAAAAAGTAGTTATCTA
TACACGCGGTCGTCTACTGTGAACGGGAGTCTTTTTTCAGGCTTTTTGAA
ACCAAGTTTAACTCTCAAGTTCATTCAATATGTATATATAAACTAGCTGC
TATCGCAACGTCACTGGCTGCGATTAGTTTTTTTAAATCTGAAGGGCACT
CTTCGGACTTGAATGGGGTCGCATGCACATCAAATGTCTTTTGCTAGTCA
CATTTAAGTAGCATCAAAATTCTAGATGTAGCATGGCGGCCTAATAGATA
TTGAAAAGCTGAGTTTTGCCTTAGTTTAAAATCTTAAATAACCTGTGCCC
TTTGCTCTTGCACAGAGTTGCGCGTACCGTGGCTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036455XLOC_036455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057831-exon-scaffold_299-1575043694:89545..89781TCONS_00057831-exon-scaffold_299-1575043694:89545..89781Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1575043694:89219..89309TCONS_00057831-exon-scaffold_299-1575043694:89219..89309Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1575043694:87637..87739TCONS_00057831-exon-scaffold_299-1575043694:87637..87739Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1575043694:86692..86757TCONS_00057831-exon-scaffold_299-1575043694:86692..86757Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1575043694:85094..86097TCONS_00057831-exon-scaffold_299-1575043694:85094..86097Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1510915933:89545..89781TCONS_00057831-exon-scaffold_299-1510915933:89545..89781Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1510915933:89219..89309TCONS_00057831-exon-scaffold_299-1510915933:89219..89309Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1510915933:87637..87739TCONS_00057831-exon-scaffold_299-1510915933:87637..87739Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1510915933:86692..86757TCONS_00057831-exon-scaffold_299-1510915933:86692..86757Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1510915933:85094..86097TCONS_00057831-exon-scaffold_299-1510915933:85094..86097Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1491911889:89545..89781TCONS_00057831-exon-scaffold_299-1491911889:89545..89781Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1491911889:89219..89309TCONS_00057831-exon-scaffold_299-1491911889:89219..89309Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1491911889:87637..87739TCONS_00057831-exon-scaffold_299-1491911889:87637..87739Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1491911889:86692..86757TCONS_00057831-exon-scaffold_299-1491911889:86692..86757Clytia hemisphaericaexon
TCONS_00057831-exon-scaffold_299-1491911889:85094..86097TCONS_00057831-exon-scaffold_299-1491911889:85094..86097Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_299supercontigscaffold_299:85094..89781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.59659	2.3722	1.72622	1.85005	0.444369	0.468195	0.469261	0.925269	0.564594	0.456869	0.191406	0	54.3311	53.9045	151.417	222.324	10.823	25.1991	691.185	409.101	0.318593	0	3.50748	2.16113	0	0.3077	0.0010956	0.141166	0.489407	0.652243
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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